PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000369110	[[105725439, 105726313], [105729620, 105729777], [105730325, 105730457], [105733360, 105733455], [105736632, 105736769], [105771539, 105771643], [105776703, 105776901], [105781188, 105781380], [105800846, 105800952], [105816777, 105816899], [105821243, 105821453], [105823999, 105824130], [105825260, 105825394], [105845727, 105845802], [105850721, 105850959]]	[[105726018, 105726313], [105729620, 105729777], [105730325, 105730457], [105733360, 105733455], [105736632, 105736769], [105771539, 105771643], [105776703, 105776901], [105781188, 105781380], [105800846, 105800952], [105816777, 105816899], [105821243, 105821453], [105823999, 105824130], [105825260, 105825394], [105845727, 105845802], [105850721, 105850766]]
ENST00000448705	[[105770129, 105770986], [105771539, 105771643]]	[[105770953, 105770986], [105771539, 105771643]]
NM_002726	[[105725441, 105726313], [105729620, 105729777], [105730325, 105730457], [105733360, 105733455], [105736632, 105736769], [105771539, 105771643], [105776703, 105776901], [105781188, 105781380], [105800846, 105800952], [105816777, 105816899], [105821243, 105821453], [105823999, 105824130], [105825260, 105825394], [105845727, 105845802], [105850721, 105850999]]	[[105726018, 105726313], [105729620, 105729777], [105730325, 105730457], [105733360, 105733455], [105736632, 105736769], [105771539, 105771643], [105776703, 105776901], [105781188, 105781380], [105800846, 105800952], [105816777, 105816899], [105821243, 105821453], [105823999, 105824130], [105825260, 105825394], [105845727, 105845802], [105850721, 105850766]]

Promoter

Chrom	Start	End	Description
chr6	105850911	105850932	CAGE_peak_2_at_PREP_5end
chr6	105850937	105850983	CAGE_peak_1_at_PREP_5end
chr6	105851072	105851084	CAGE_peak_3_at_PREP_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I105092	105092403	105092416	0.24	[{'connected_gene': 'PREP', 'score': 11.23}, {'connected_gene': 'POPDC3', 'score': 11.03}, {'connected_gene': 'HACE1', 'score': 1.5}, {'connected_gene': 'LIN28B', 'score': 1.35}, {'connected_gene': 'GC06P105082', 'score': 0.44}, {'connected_gene': 'BVES-AS1', 'score': 0.26}]
chr6	GH06I105194	105192806	105192955	0.58	[{'connected_gene': 'PREP', 'score': 9.98}, {'connected_gene': 'POPDC3', 'score': 0.39}, {'connected_gene': 'GC06M105240', 'score': 0.25}]
chr6	GH06I105322	105322825	105328610	0.71	[{'connected_gene': 'PREP', 'score': 15.68}, {'connected_gene': 'ENSG00000231628', 'score': 10.7}, {'connected_gene': 'POPDC3', 'score': 5.9}, {'connected_gene': 'PIR51949', 'score': 0.39}]
chr6	GH06I105190	105190771	105192065	0.2	[{'connected_gene': 'PREP', 'score': 9.98}, {'connected_gene': 'POPDC3', 'score': 0.39}, {'connected_gene': 'GC06M105240', 'score': 0.25}]
chr6	GH06I105345	105345376	105346855	0.66	[{'connected_gene': 'PREP', 'score': 15.09}, {'connected_gene': 'ENSG00000231628', 'score': 10.25}, {'connected_gene': 'POPDC3', 'score': 5.52}, {'connected_gene': 'PIR51949', 'score': 0.29}]
chr6	GH06I105452	105452438	105460516	1.55	[{'connected_gene': 'PREP', 'score': 16.06}, {'connected_gene': 'PRDM1', 'score': 10.28}, {'connected_gene': 'LOC105377921', 'score': 0.77}, {'connected_gene': 'GC06P105464', 'score': 0.44}]
chr6	GH06I105429	105429695	105430251	0.2	[{'connected_gene': 'PREP', 'score': 11.15}, {'connected_gene': 'PRDM1', 'score': 10.49}, {'connected_gene': 'GC06P105412', 'score': 0.37}, {'connected_gene': 'LOC105377921', 'score': 0.34}]
chr6	GH06I105431	105431201	105431600	0.72	[{'connected_gene': 'PREP', 'score': 11.15}, {'connected_gene': 'PRDM1', 'score': 10.49}, {'connected_gene': 'GC06P105412', 'score': 0.37}, {'connected_gene': 'LOC105377921', 'score': 0.34}]
chr6	GH06I105432	105431912	105434007	0.87	[{'connected_gene': 'PREP', 'score': 11.15}, {'connected_gene': 'PRDM1', 'score': 10.49}, {'connected_gene': 'LOC105377921', 'score': 0.34}, {'connected_gene': 'GC06P105412', 'score': 0.34}]
chr6	GH06I105192	105192984	105193700	0.63	[{'connected_gene': 'PREP', 'score': 9.98}, {'connected_gene': 'BVES', 'score': 4.88}, {'connected_gene': 'POPDC3', 'score': 0.39}, {'connected_gene': 'GC06M105240', 'score': 0.25}]
chr6	GH06I105427	105427572	105429455	0.96	[{'connected_gene': 'PREP', 'score': 15.76}, {'connected_gene': 'GC06P105412', 'score': 0.37}, {'connected_gene': 'LOC105377921', 'score': 0.31}]
chr6	GH06I105380	105380076	105381928	0.38	[{'connected_gene': 'PREP', 'score': 17.71}, {'connected_gene': 'ENSG00000231628', 'score': 10.36}, {'connected_gene': 'PIR51949', 'score': 0.2}]
chr6	GH06I105370	105370338	105375195	0.94	[{'connected_gene': 'PREP', 'score': 18.08}, {'connected_gene': 'ENSG00000231628', 'score': 10.37}, {'connected_gene': 'PIR51949', 'score': 0.22}]
chr6	GH06I105259	105259828	105261379	0.56	[{'connected_gene': 'PREP', 'score': 10.05}, {'connected_gene': 'GC06P105272', 'score': 0.39}, {'connected_gene': 'GC06M105240', 'score': 0.34}]
chr6	GH06I105358	105358616	105361010	1.15	[{'connected_gene': 'PREP', 'score': 17.62}, {'connected_gene': 'PIR51949', 'score': 0.26}]
chr6	GH06I105363	105363334	105365225	0.66	[{'connected_gene': 'PREP', 'score': 18.28}, {'connected_gene': 'PIR51949', 'score': 0.25}]
chr6	GH06I105388	105388446	105388595	0.43	[{'connected_gene': 'PREP', 'score': 0.39}, {'connected_gene': 'PIR51949', 'score': 0.19}]
chr6	GH06I105384	105384106	105384255	0.54	[{'connected_gene': 'PREP', 'score': 0.37}, {'connected_gene': 'PIR51949', 'score': 0.2}]
chr6	GH06I105401	105401383	105404195	2	[{'connected_gene': 'PREP', 'score': 558.19}, {'connected_gene': 'PIR51949', 'score': 0.17}]
chr6	GH06I105136	105135028	105135533	0.74	[{'connected_gene': 'BVES-AS1', 'score': 550.77}, {'connected_gene': 'BVES', 'score': 550.77}, {'connected_gene': 'POPDC3', 'score': 23.63}, {'connected_gene': 'PREP', 'score': 10.61}, {'connected_gene': 'GC06P105082', 'score': 0.23}]
chr6	GH06I105135	105135801	105138000	1.8	[{'connected_gene': 'BVES', 'score': 571.29}, {'connected_gene': 'BVES-AS1', 'score': 550.77}, {'connected_gene': 'POPDC3', 'score': 11.17}, {'connected_gene': 'PREP', 'score': 10.61}]
chr6	GH06I105303	105303758	105305764	0.38	[{'connected_gene': 'GC06M105303', 'score': 550.77}, {'connected_gene': 'RPL35P3', 'score': 550.77}, {'connected_gene': 'ENSG00000231628', 'score': 12.12}, {'connected_gene': 'POPDC3', 'score': 5.08}, {'connected_gene': 'PIR51949', 'score': 0.39}, {'connected_gene': 'PREP', 'score': 0.15}]
chr6	GH06I105302	105302186	105302335	0.38	[{'connected_gene': 'GC06M105303', 'score': 550.77}, {'connected_gene': 'RPL35P3', 'score': 550.77}, {'connected_gene': 'ENSG00000231628', 'score': 12.15}, {'connected_gene': 'RPL7AP35', 'score': 0.77}, {'connected_gene': 'PREP', 'score': 0.15}]
chr6	GH06I105301	105301341	105301537	0.31	[{'connected_gene': 'GC06M105303', 'score': 550.77}, {'connected_gene': 'RPL35P3', 'score': 550.77}, {'connected_gene': 'ENSG00000231628', 'score': 12.15}, {'connected_gene': 'RPL7AP35', 'score': 0.77}, {'connected_gene': 'PREP', 'score': 0.15}]
chr6	GH06I105318	105318283	105319927	0.38	[{'connected_gene': 'ENSG00000231628', 'score': 10.87}, {'connected_gene': 'PREP', 'score': 10.73}, {'connected_gene': 'PIR51949', 'score': 0.77}]
chr6	GH06I105319	105318080	105318095	0.43	[{'connected_gene': 'ENSG00000231628', 'score': 10.88}, {'connected_gene': 'PREP', 'score': 10.72}, {'connected_gene': 'PIR51949', 'score': 0.77}]
chr6	GH06I105160	105160430	105170690	1.14	[{'connected_gene': 'GC06M105161', 'score': 550.77}, {'connected_gene': 'BVES', 'score': 23.61}, {'connected_gene': 'POPDC3', 'score': 19.13}, {'connected_gene': 'PREP', 'score': 10.07}, {'connected_gene': 'BVES-AS1', 'score': 0.31}]