PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000248484	[[24144508, 24144987], [24164288, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24249028]]	[[24164322, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247519]]
ENST00000382263	[[24153518, 24153668], [24164288, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24250232]]	[[24164322, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247519]]
ENST00000403372	[[24144802, 24144987], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247638]]	[[24200882, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247519]]
ENST00000464735	[[24153497, 24153668], [24159594, 24159684], [24164288, 24164391], [24167483, 24167594], [24168365, 24168550]]	None
ENST00000382258	[[24153498, 24153668], [24164288, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243412]]	[[24164322, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243263]]
NM_001204459	[[24144508, 24144987], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24250244]]	[[24200882, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247519]]
NM_148957	[[24144508, 24144987], [24164288, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24250244]]	[[24164322, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247519]]
NM_001204458	[[24153498, 24153668], [24164288, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24250244]]	[[24164322, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243236], [24247510, 24247519]]
NM_018647	[[24153498, 24153668], [24164288, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243412]]	[[24164322, 24164391], [24167483, 24167594], [24190005, 24190184], [24200845, 24200931], [24233188, 24233353], [24234503, 24234629], [24242118, 24242221], [24242830, 24243263]]

Promoter

Chrom	Start	End	Description
chr13	24144532	24144589	CAGE_peak_2_at_TNFRSF19_5end
chr13	24144601	24144622	CAGE_peak_7_at_TNFRSF19_5end
chr13	24144796	24144809	CAGE_peak_6_at_TNFRSF19_5end
chr13	24144882	24144893	CAGE_peak_8_at_TNFRSF19_5end
chr13	24144896	24144956	CAGE_peak_3_at_TNFRSF19_5end
chr13	24144958	24144969	CAGE_peak_10_at_TNFRSF19_5end
chr13	24153488	24153553	CAGE_peak_1_at_TNFRSF19_5end
chr13	24153554	24153576	CAGE_peak_4_at_TNFRSF19_5end
chr13	24153584	24153602	CAGE_peak_5_at_TNFRSF19_5end
chr13	24153617	24153622	CAGE_peak_11_at_TNFRSF19_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I023574	23574115	23574482	0.22	[{'connected_gene': 'TNFRSF19', 'score': 3.23}, {'connected_gene': 'SGCG', 'score': 1.27}, {'connected_gene': 'LOC105370114', 'score': 0.11}]
chr13	GH13I023578	23578505	23581085	1.97	[{'connected_gene': 'TNFRSF19', 'score': 550.44}, {'connected_gene': 'C1QTNF9B', 'score': 10.28}, {'connected_gene': 'MIPEP', 'score': 10.05}, {'connected_gene': 'PCOTH', 'score': 10.05}, {'connected_gene': 'LOC105370114', 'score': 0.12}]
chr13	GH13I023762	23762369	23764047	0.2	[{'connected_gene': 'TNFRSF19', 'score': 9.4}, {'connected_gene': 'C1QTNF9', 'score': 7.12}, {'connected_gene': 'MIPEP', 'score': 6.81}, {'connected_gene': 'MTCO3P2', 'score': 0.77}, {'connected_gene': 'PIR57166', 'score': 0.25}]
chr13	GH13I023616	23616780	23619952	0.76	[{'connected_gene': 'TNFRSF19', 'score': 20.07}, {'connected_gene': 'LOC105370114', 'score': 0.15}]
chr13	GH13I023667	23667987	23669562	0.43	[{'connected_gene': 'TNFRSF19', 'score': 15.49}, {'connected_gene': 'LOC105370114', 'score': 0.25}]
chr13	GH13I023628	23628922	23629071	0.2	[{'connected_gene': 'TNFRSF19', 'score': 10.36}, {'connected_gene': 'LOC105370114', 'score': 0.17}]
chr13	GH13I023614	23614811	23616625	0.84	[{'connected_gene': 'TNFRSF19', 'score': 19.92}, {'connected_gene': 'LOC105370114', 'score': 0.15}]
chr13	GH13I023630	23630862	23631011	0.72	[{'connected_gene': 'TNFRSF19', 'score': 10.35}, {'connected_gene': 'LOC105370114', 'score': 0.18}]
chr13	GH13I023569	23569641	23573668	2.15	[{'connected_gene': 'TNFRSF19', 'score': 550.77}, {'connected_gene': 'LOC105370114', 'score': 0.11}]
chr13	GH13I023678	23678135	23679921	0.74	[{'connected_gene': 'TNFRSF19', 'score': 5.79}, {'connected_gene': 'LOC105370114', 'score': 0.28}]
chr13	GH13I023659	23659837	23660743	0.2	[{'connected_gene': 'TNFRSF19', 'score': 9.93}, {'connected_gene': 'LOC105370114', 'score': 0.23}]
chr13	GH13I023644	23644173	23645210	0.51	[{'connected_gene': 'TNFRSF19', 'score': 10.22}, {'connected_gene': 'LOC105370114', 'score': 0.19}]
chr13	GH13I023620	23620166	23622190	0.74	[{'connected_gene': 'TNFRSF19', 'score': 15.89}, {'connected_gene': 'LOC105370114', 'score': 0.16}]
chr13	GH13I023665	23665971	23666877	0.4	[{'connected_gene': 'TNFRSF19', 'score': 15.94}, {'connected_gene': 'LOC105370114', 'score': 0.25}]
chr13	GH13I023629	23629138	23630855	0.87	[{'connected_gene': 'TNFRSF19', 'score': 19.74}, {'connected_gene': 'LOC105370114', 'score': 0.18}]
chr13	GH13I023637	23637982	23638131	0.31	[{'connected_gene': 'TNFRSF19', 'score': 10.17}, {'connected_gene': 'LOC105370114', 'score': 0.18}]
chr13	GH13I023655	23655918	23659147	1.19	[{'connected_gene': 'TNFRSF19', 'score': 16.09}, {'connected_gene': 'LOC105370114', 'score': 0.22}]
chr13	GH13I023598	23598634	23601297	0.8	[{'connected_gene': 'TNFRSF19', 'score': 10.72}, {'connected_gene': 'LOC105370114', 'score': 0.14}]
chr13	GH13I023669	23669596	23676741	1.06	[{'connected_gene': 'TNFRSF19', 'score': 15.61}, {'connected_gene': 'LOC105370114', 'score': 0.26}]
chr13	GH13I023631	23631205	23633397	0.6	[{'connected_gene': 'TNFRSF19', 'score': 19.71}, {'connected_gene': 'LOC105370114', 'score': 0.18}]
chr13	GH13I023652	23652752	23655184	1	[{'connected_gene': 'TNFRSF19', 'score': 15.47}, {'connected_gene': 'LOC105370114', 'score': 0.21}]
chr13	GH13I023515	23515872	23516703	0.31	[{'connected_gene': 'TNFRSF19', 'score': 10.52}, {'connected_gene': 'PIR60894', 'score': 0.37}, {'connected_gene': 'LINC00352', 'score': 0.37}]
chr13	GH13I023557	23557975	23560977	1.32	[{'connected_gene': 'TNFRSF19', 'score': 0.39}, {'connected_gene': 'PIR60894', 'score': 0.31}]
chr13	GH13I023546	23546802	23547799	0.58	[{'connected_gene': 'TNFRSF19', 'score': 12.07}, {'connected_gene': 'PIR60894', 'score': 0.37}]
chr13	GH13I023551	23551690	23552756	0.79	[{'connected_gene': 'TNFRSF19', 'score': 0.37}, {'connected_gene': 'PIR60894', 'score': 0.34}]
chr13	GH13I023567	23567981	23568391	0.95	[{'connected_gene': 'TNFRSF19', 'score': 0.77}, {'connected_gene': 'PIR60894', 'score': 0.28}]
chr13	GH13I023769	23769183	23772824	0.96	[{'connected_gene': 'MIPEP', 'score': 10.5}, {'connected_gene': 'TNFRSF19', 'score': 9.62}, {'connected_gene': 'C1QTNF9', 'score': 4.75}, {'connected_gene': 'MTCO3P2', 'score': 0.77}, {'connected_gene': 'PCOTH', 'score': 0.13}]
chr13	GH13I023608	23608043	23610999	1.05	[{'connected_gene': 'MIPEP', 'score': 11.22}, {'connected_gene': 'PCOTH', 'score': 11.22}, {'connected_gene': 'C1QTNF9B', 'score': 11.22}, {'connected_gene': 'TNFRSF19', 'score': 10.51}, {'connected_gene': 'LOC105370114', 'score': 0.14}]
chr13	GH13I023504	23504584	23508235	1.09	[{'connected_gene': 'MIPEP', 'score': 11.27}, {'connected_gene': 'PCOTH', 'score': 11.27}, {'connected_gene': 'C1QTNF9B', 'score': 11.27}, {'connected_gene': 'TNFRSF19', 'score': 11.22}, {'connected_gene': 'LINC00352', 'score': 0.44}, {'connected_gene': 'PIR60894', 'score': 0.31}]
chr13	GH13I023509	23509626	23511732	0.99	[{'connected_gene': 'C1QTNF9B', 'score': 11.0}, {'connected_gene': 'TNFRSF19', 'score': 10.82}, {'connected_gene': 'LINC00352', 'score': 0.39}, {'connected_gene': 'PIR60894', 'score': 0.34}]
chr13	GH13I023468	23468864	23471435	0.59	[{'connected_gene': 'C1QTNF9B', 'score': 11.97}, {'connected_gene': 'MIPEP', 'score': 11.72}, {'connected_gene': 'PCOTH', 'score': 11.72}, {'connected_gene': 'SACS', 'score': 11.27}, {'connected_gene': 'TNFRSF19', 'score': 10.4}, {'connected_gene': 'LINC00327', 'score': 0.77}, {'connected_gene': 'LINC00352', 'score': 0.31}]
chr13	GH13I023805	23805792	23808699	0.95	[{'connected_gene': 'C1QTNF9', 'score': 27.18}, {'connected_gene': 'TNFRSF19', 'score': 9.14}, {'connected_gene': 'MIPEP', 'score': 8.74}, {'connected_gene': 'MTCO3P2', 'score': 0.26}, {'connected_gene': 'PCOTH', 'score': 0.18}]
chr13	GH13I023848	23848162	23849490	0.31	[{'connected_gene': 'C1QTNF9', 'score': 28.33}, {'connected_gene': 'MIPEP', 'score': 11.67}, {'connected_gene': 'TNFRSF19', 'score': 9.96}, {'connected_gene': 'PCOTH', 'score': 0.26}, {'connected_gene': 'MTCO3P2', 'score': 0.18}]
chr13	GH13I023866	23866304	23869579	1.14	[{'connected_gene': 'C1QTNF9', 'score': 39.85}, {'connected_gene': 'MIPEP', 'score': 21.1}, {'connected_gene': 'PCOTH', 'score': 11.96}, {'connected_gene': 'C1QTNF9B', 'score': 11.91}, {'connected_gene': 'TNFRSF19', 'score': 10.34}, {'connected_gene': 'MTCO3P2', 'score': 0.15}]
chr13	GH13I023558	23557383	23557684	0.73	[{'connected_gene': 'SACS', 'score': 1.24}, {'connected_gene': 'TNFRSF19', 'score': 0.39}, {'connected_gene': 'PIR60894', 'score': 0.31}]
chr13	GH13I023460	23460601	23461000	0.54	[{'connected_gene': 'SACS', 'score': 11.96}, {'connected_gene': 'MIPEP', 'score': 11.35}, {'connected_gene': 'PCOTH', 'score': 11.35}, {'connected_gene': 'C1QTNF9B', 'score': 11.35}, {'connected_gene': 'TNFRSF19', 'score': 9.96}, {'connected_gene': 'LINC00327', 'score': 0.44}]
chr13	GH13I023680	23680503	23682070	0.51	[{'connected_gene': 'LOC105370114', 'score': 0.29}, {'connected_gene': 'TNFRSF19', 'score': 0.14}]
chr13	GH13I023705	23705401	23706341	0.43	[{'connected_gene': 'LOC105370114', 'score': 0.44}, {'connected_gene': 'TNFRSF19', 'score': 0.12}]
chr13	GH13I023694	23694963	23696989	0.4	[{'connected_gene': 'LOC105370114', 'score': 0.37}, {'connected_gene': 'TNFRSF19', 'score': 0.13}]
chr13	GH13I023703	23703302	23703451	0.2	[{'connected_gene': 'LOC105370114', 'score': 0.39}, {'connected_gene': 'TNFRSF19', 'score': 0.12}]
chr13	GH13I023700	23700854	23702381	0.4	[{'connected_gene': 'LOC105370114', 'score': 0.39}, {'connected_gene': 'TNFRSF19', 'score': 0.12}]
chr13	GH13I023766	23766462	23766611	0.52	[{'connected_gene': 'MTCO3P2', 'score': 550.77}, {'connected_gene': 'TNFRSF19', 'score': 9.59}, {'connected_gene': 'MIPEP', 'score': 0.13}, {'connected_gene': 'PCOTH', 'score': 0.13}]
chr13	GH13I023465	23465989	23467989	1.38	[{'connected_gene': 'LINC00327', 'score': 550.77}, {'connected_gene': 'C1QTNF9B', 'score': 11.97}, {'connected_gene': 'MIPEP', 'score': 11.72}, {'connected_gene': 'PCOTH', 'score': 11.72}, {'connected_gene': 'TNFRSF19', 'score': 10.4}, {'connected_gene': 'LINC00352', 'score': 0.29}]
chr13	GH13I024015	24015200	24017641	0.2	[{'connected_gene': 'ENSG00000228741', 'score': 12.19}, {'connected_gene': 'TNFRSF19', 'score': 6.23}, {'connected_gene': 'PIR59399', 'score': 0.34}, {'connected_gene': 'SPATA13', 'score': 0.28}, {'connected_gene': 'ENSG00000273167', 'score': 0.28}]