PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000219334	[[68392230, 68395210], [68395505, 68395662], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406290], [68420500, 68420562], [68482255, 68482591]]	[[68395108, 68395210], [68395505, 68395662], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406084]]
ENST00000566723	[[68404876, 68404995], [68406194, 68406290], [68415947, 68416104], [68420500, 68420562], [68482255, 68482345]]	None
ENST00000561749	[[68405803, 68406290], [68482255, 68482395]]	[[68405803, 68406084]]
ENST00000574662	[[68394440, 68395662], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68404908]]	[[68395573, 68395662], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68404908]]
ENST00000568373	[[68395029, 68395210], [68395505, 68395611], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406161]]	[[68395108, 68395210], [68395505, 68395611], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406084]]
ENST00000563226	[[68395036, 68395210], [68395505, 68395662], [68397398, 68397462], [68397703, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406161]]	[[68395108, 68395210], [68395505, 68395662], [68397398, 68397462], [68397703, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406084]]
ENST00000563396	[[68395201, 68395611], [68397398, 68397596]]	None
ENST00000567223	[[68397644, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68404934]]	None
ENST00000566009	[[68398316, 68398497], [68398653, 68398809], [68398919, 68398995], [68404761, 68404934]]	None
ENST00000567811	[[68398482, 68398809], [68398919, 68398995], [68404761, 68404934]]	None
ENST00000563455	[[68401354, 68401749], [68404761, 68404912]]	None
ENST00000566466	[[68402757, 68403117], [68404761, 68404983]]	None
NM_018667	[[68392229, 68395210], [68395505, 68395662], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406290], [68420500, 68420562], [68482255, 68482409]]	[[68395108, 68395210], [68395505, 68395662], [68397398, 68397462], [68397679, 68397769], [68398653, 68398809], [68398919, 68398995], [68404761, 68406084]]

Promoter

Chrom	Start	End	Description
chr16	68406171	68406196	CAGE_peak_4_at_SMPD3_5end
chr16	68482370	68482375	CAGE_peak_3_at_SMPD3_5end
chr16	68482394	68482417	CAGE_peak_1_at_SMPD3_5end
chr16	68482440	68482453	CAGE_peak_2_at_SMPD3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr16	GH16I068414	68414946	68419536	1.25	[{'connected_gene': 'SLC7A6OS', 'score': 12.1}, {'connected_gene': 'SMPD3', 'score': 11.8}, {'connected_gene': 'ZFP90', 'score': 10.9}, {'connected_gene': 'PRMT7', 'score': 10.52}, {'connected_gene': 'RNU4-36P', 'score': 10.37}, {'connected_gene': 'UTP4', 'score': 5.09}, {'connected_gene': 'CDH1', 'score': 4.32}, {'connected_gene': 'NFATC3', 'score': 3.13}, {'connected_gene': 'PSMB10', 'score': 2.95}, {'connected_gene': 'DPEP2', 'score': 2.87}, {'connected_gene': 'TANGO6', 'score': 2.78}, {'connected_gene': 'SLC7A6', 'score': 2.23}, {'connected_gene': 'GC16M068393', 'score': 0.34}]
chr16	GH16I068396	68396658	68396787	0.65	[{'connected_gene': 'GFOD2', 'score': 4.17}, {'connected_gene': 'GC16M068393', 'score': 0.77}, {'connected_gene': 'SMPD3', 'score': 0.23}]
chr16	GH16I067536	67536540	67539417	2.02	[{'connected_gene': 'RIPOR1', 'score': 550.37}, {'connected_gene': 'ATP6V0D1', 'score': 15.79}, {'connected_gene': 'SMPD3', 'score': 4.13}, {'connected_gene': 'ENSG00000261396', 'score': 0.77}, {'connected_gene': 'LOC100505942', 'score': 0.44}]
chr16	GH16I068406	68406458	68407200	0.63	[{'connected_gene': 'SMPD3', 'score': 11.51}, {'connected_gene': 'PRMT7', 'score': 10.46}, {'connected_gene': 'SLC7A6OS', 'score': 10.46}, {'connected_gene': 'RNU4-36P', 'score': 10.09}, {'connected_gene': 'ZFP90', 'score': 4.25}, {'connected_gene': 'GC16M068393', 'score': 0.39}]
chr16	GH16I068486	68486482	68487803	0.66	[{'connected_gene': 'SMPD3', 'score': 12.55}, {'connected_gene': 'RNU4-36P', 'score': 10.77}, {'connected_gene': 'PRMT7', 'score': 9.95}, {'connected_gene': 'SLC7A6OS', 'score': 9.95}, {'connected_gene': 'ZFP90', 'score': 9.61}, {'connected_gene': 'GC16M068485', 'score': 0.77}, {'connected_gene': 'GC16M068480', 'score': 0.44}]
chr16	GH16I068489	68489905	68494039	1.09	[{'connected_gene': 'SMPD3', 'score': 12.32}, {'connected_gene': 'RNU4-36P', 'score': 11.13}, {'connected_gene': 'ZFP90', 'score': 10.69}, {'connected_gene': 'GC16M068494', 'score': 0.77}, {'connected_gene': 'PIR40396', 'score': 0.77}, {'connected_gene': 'GC16M068485', 'score': 0.77}]
chr16	GH16I068434	68434938	68435087	0.38	[{'connected_gene': 'SMPD3', 'score': 0.39}, {'connected_gene': 'GC16M068393', 'score': 0.26}]
chr16	GH16I068370	68367098	68367307	0.76	[{'connected_gene': 'DUS2', 'score': 7.41}, {'connected_gene': 'ENSG00000279693', 'score': 0.77}, {'connected_gene': 'RNU4-30P', 'score': 0.28}, {'connected_gene': 'SMPD3', 'score': 0.18}]
chr16	GH16I068381	68381793	68388683	1.39	[{'connected_gene': 'PRMT7', 'score': 41.4}, {'connected_gene': 'SLC7A6', 'score': 14.59}, {'connected_gene': 'SLC7A6OS', 'score': 10.67}, {'connected_gene': 'RNU4-36P', 'score': 10.59}, {'connected_gene': 'DUS2', 'score': 9.88}, {'connected_gene': 'GC16M068393', 'score': 0.44}, {'connected_gene': 'ENSG00000279693', 'score': 0.39}, {'connected_gene': 'SMPD3', 'score': 0.21}]
chr16	GH16I068377	68377015	68378509	0.74	[{'connected_gene': 'PRMT7', 'score': 41.64}, {'connected_gene': 'SLC7A6', 'score': 25.07}, {'connected_gene': 'SLC7A6OS', 'score': 10.96}, {'connected_gene': 'RNU4-30P', 'score': 10.79}, {'connected_gene': 'ENSG00000279693', 'score': 0.44}, {'connected_gene': 'GC16M068393', 'score': 0.37}, {'connected_gene': 'SMPD3', 'score': 0.19}]
chr16	GH16I068361	68361690	68362964	0.46	[{'connected_gene': 'PRMT7', 'score': 36.84}, {'connected_gene': 'SLC7A6', 'score': 14.28}, {'connected_gene': 'DUS2', 'score': 7.81}, {'connected_gene': 'DPEP2', 'score': 4.29}, {'connected_gene': 'ENSG00000279693', 'score': 0.44}, {'connected_gene': 'RNU4-30P', 'score': 0.29}, {'connected_gene': 'SMPD3', 'score': 0.17}]
chr16	GH16I068367	68367358	68367507	0.69	[{'connected_gene': 'PRMT7', 'score': 36.91}, {'connected_gene': 'SLC7A6', 'score': 16.11}, {'connected_gene': 'DUS2', 'score': 9.46}, {'connected_gene': 'ENSG00000279693', 'score': 0.77}, {'connected_gene': 'RNU4-30P', 'score': 0.28}, {'connected_gene': 'SMPD3', 'score': 0.18}]
chr16	GH16I068279	68279710	68293211	1.74	[{'connected_gene': 'PRMT7', 'score': 44.55}, {'connected_gene': 'SLC7A6', 'score': 34.41}, {'connected_gene': 'NFATC3', 'score': 20.06}, {'connected_gene': 'SLC7A6OS', 'score': 16.27}, {'connected_gene': 'RNU4-30P', 'score': 10.85}, {'connected_gene': 'DUS2', 'score': 10.58}, {'connected_gene': 'RANBP10', 'score': 9.94}, {'connected_gene': 'DPEP2', 'score': 6.39}, {'connected_gene': 'PSMB10', 'score': 5.26}, {'connected_gene': 'LRRC36', 'score': 4.23}, {'connected_gene': 'THAP11', 'score': 3.43}, {'connected_gene': 'SMPD3', 'score': 2.58}, {'connected_gene': 'ZFP90', 'score': 1.63}, {'connected_gene': 'EDC4', 'score': 1.57}, {'connected_gene': 'RNU6-1262P', 'score': 0.77}, {'connected_gene': 'ENSG00000279649', 'score': 0.44}]
chr16	GH16I068364	68364242	68365042	0.64	[{'connected_gene': 'PRMT7', 'score': 37.19}, {'connected_gene': 'SLC7A6', 'score': 15.7}, {'connected_gene': 'ENSG00000279693', 'score': 0.44}, {'connected_gene': 'RNU4-30P', 'score': 0.28}, {'connected_gene': 'SMPD3', 'score': 0.18}]
chr16	GH16I068409	68409158	68409187	0.2	[{'connected_gene': 'PRMT7', 'score': 10.53}, {'connected_gene': 'SLC7A6OS', 'score': 10.53}, {'connected_gene': 'RNU4-36P', 'score': 10.37}, {'connected_gene': 'ZFP90', 'score': 6.09}, {'connected_gene': 'GC16M068393', 'score': 0.37}, {'connected_gene': 'SMPD3', 'score': 0.28}]
chr16	GH16I068358	68358592	68360215	0.31	[{'connected_gene': 'PRMT7', 'score': 48.01}, {'connected_gene': 'RNU6-1262P', 'score': 12.21}, {'connected_gene': 'SLC7A6OS', 'score': 11.32}, {'connected_gene': 'SLC7A6', 'score': 11.32}, {'connected_gene': 'ENSG00000212445', 'score': 10.0}, {'connected_gene': 'ENSG00000279693', 'score': 0.39}, {'connected_gene': 'RNU4-30P', 'score': 0.31}, {'connected_gene': 'SMPD3', 'score': 0.17}]
chr16	GH16I068520	68520419	68521200	1.14	[{'connected_gene': 'ZFP90', 'score': 35.47}, {'connected_gene': 'SMPD3', 'score': 11.32}, {'connected_gene': 'PRMT7', 'score': 9.87}, {'connected_gene': 'SLC7A6OS', 'score': 9.87}, {'connected_gene': 'LOC105371321', 'score': 0.44}]
chr16	GH16I068448	68448178	68449201	1.99	[{'connected_gene': 'PIR55988', 'score': 550.77}, {'connected_gene': 'ENSG00000274698', 'score': 550.77}, {'connected_gene': 'SMPD3', 'score': 550.77}, {'connected_gene': 'ZFP90', 'score': 10.36}]
chr16	GH16I068509	68509645	68510625	1.22	[{'connected_gene': 'GC16M068509', 'score': 550.77}, {'connected_gene': 'PIR38497', 'score': 550.77}, {'connected_gene': 'SMPD3', 'score': 12.19}, {'connected_gene': 'RNU4-36P', 'score': 11.48}, {'connected_gene': 'ZFP90', 'score': 8.67}, {'connected_gene': 'LOC105371321', 'score': 0.77}]
chr16	GH16I068481	68481401	68481800	0.72	[{'connected_gene': 'PIR45464', 'score': 550.77}, {'connected_gene': 'GC16M068480', 'score': 550.77}, {'connected_gene': 'GC16M068479', 'score': 550.77}, {'connected_gene': 'SMPD3', 'score': 12.01}, {'connected_gene': 'RNU4-36P', 'score': 10.87}, {'connected_gene': 'ZFP90', 'score': 10.66}]
chr16	GH16I068475	68475198	68475347	0.79	[{'connected_gene': 'GC16M068474', 'score': 550.77}, {'connected_gene': 'ENSG00000199263', 'score': 550.77}, {'connected_gene': 'SMPD3', 'score': 12.03}, {'connected_gene': 'RNU4-36P', 'score': 10.84}, {'connected_gene': 'GC16M068477', 'score': 0.77}]
chr16	GH16I068369	68369424	68371573	1.1	[{'connected_gene': 'ENSG00000279693', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 37.2}, {'connected_gene': 'SLC7A6', 'score': 15.15}, {'connected_gene': 'DUS2', 'score': 9.45}, {'connected_gene': 'CENPT', 'score': 4.62}, {'connected_gene': 'GC16M068393', 'score': 0.34}, {'connected_gene': 'SMPD3', 'score': 0.18}]
chr16	GH16I068368	68367875	68369347	0.83	[{'connected_gene': 'ENSG00000279693', 'score': 550.77}, {'connected_gene': 'PRMT7', 'score': 20.3}, {'connected_gene': 'SLC7A6', 'score': 14.6}, {'connected_gene': 'RNU4-30P', 'score': 0.28}, {'connected_gene': 'SMPD3', 'score': 0.18}]
chr16	GH16I068478	68478478	68479550	0.52	[{'connected_gene': 'PIR45464', 'score': 550.77}, {'connected_gene': 'RPL35AP33', 'score': 550.77}, {'connected_gene': 'GC16M068477', 'score': 550.77}, {'connected_gene': 'GC16M068479', 'score': 550.77}, {'connected_gene': 'SMPD3', 'score': 12.01}, {'connected_gene': 'RNU4-36P', 'score': 10.86}]