PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000282369	[[114460458, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114515671, 114515856]]	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114515671, 114515734]]
ENST00000513154	[[114460459, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114505304, 114505658]]	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114505304, 114505331]]
ENST00000514154	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114515671, 114515734]]	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114482924]]
ENST00000513485	[[114477020, 114477071], [114480294, 114480441], [114482765, 114483091], [114489401, 114489508]]	None
ENST00000515104	[[114482764, 114483091], [114499214, 114499449], [114504663, 114504783], [114505304, 114505427]]	None
ENST00000510222	[[114482765, 114483091], [114505304, 114505563]]	None
ENST00000508894	[[114482872, 114483091], [114495337, 114495367], [114499214, 114499449], [114505304, 114505606]]	[[114482872, 114483091], [114495337, 114495367], [114499214, 114499449], [114505304, 114505331]]
ENST00000379618	[[114506798, 114506919], [114515671, 114516243]]	[[114506799, 114506919], [114515671, 114515734]]
ENST00000511701	[[114506802, 114506919], [114509785, 114509978]]	None
ENST00000379617	[[114512819, 114513569], [114515671, 114516243]]	[[114513446, 114513569], [114515671, 114515734]]
NM_001300759	[[114460458, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114505304, 114505660]]	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114505304, 114505331]]
NM_018700	[[114460458, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114515671, 114516243]]	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114499214, 114499449], [114515671, 114515734]]
NM_001300752	[[114460458, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114483091], [114515671, 114516243]]	[[114462199, 114462554], [114466288, 114466586], [114469556, 114469844], [114472696, 114472821], [114473059, 114473313], [114476975, 114477071], [114480294, 114480441], [114482765, 114482924]]
NM_001017397	[[114506798, 114506919], [114515671, 114516243]]	[[114506799, 114506919], [114515671, 114515734]]
NM_001017398	[[114513235, 114513569], [114515671, 114516243]]	[[114513446, 114513569], [114515671, 114515734]]

Promoter

Chrom	Start	End	Description
chr5	114505591	114505614	CAGE_peak_1_at_TRIM36_5end
chr5	114505624	114505637	CAGE_peak_3_at_TRIM36_5end
chr5	114515936	114515944	CAGE_peak_11_at_TRIM36_5end
chr5	114515949	114516006	CAGE_peak_2_at_TRIM36_5end
chr5	114516014	114516025	CAGE_peak_5_at_TRIM36_5end
chr5	114516029	114516046	CAGE_peak_4_at_TRIM36_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I115422	115422593	115424882	0.8	[{'connected_gene': 'FEM1C', 'score': 5.95}, {'connected_gene': 'TRIM36', 'score': 4.41}, {'connected_gene': 'AK3P4', 'score': 0.34}, {'connected_gene': 'GC05M115471', 'score': 0.21}]
chr5	GH05I115208	115208801	115209999	0.94	[{'connected_gene': 'TRIM36', 'score': 11.1}, {'connected_gene': 'PGGT1B', 'score': 7.89}, {'connected_gene': 'GC05M115205', 'score': 0.77}, {'connected_gene': 'ENSG00000271797', 'score': 0.23}]
chr5	GH05I115242	115242529	115244090	0.52	[{'connected_gene': 'TRIM36', 'score': 10.43}, {'connected_gene': 'TICAM2', 'score': 9.18}, {'connected_gene': 'LOC101927100', 'score': 9.18}, {'connected_gene': 'TMED7-TICAM2', 'score': 9.17}, {'connected_gene': 'ENSG00000271797', 'score': 0.37}, {'connected_gene': 'PGGT1B', 'score': 0.37}, {'connected_gene': 'GC05M115205', 'score': 0.28}]
chr5	GH05I115169	115169000	115171488	2.27	[{'connected_gene': 'TRIM36', 'score': 555.31}, {'connected_gene': 'CCDC112', 'score': 1.55}, {'connected_gene': 'TRIM36-IT1', 'score': 0.34}]
chr5	GH05I115348	115348668	115350478	1	[{'connected_gene': 'TRIM36', 'score': 5.38}, {'connected_gene': 'LOC105379130', 'score': 0.34}, {'connected_gene': 'LOC105379129', 'score': 0.23}]
chr5	GH05I115351	115351401	115352000	0.86	[{'connected_gene': 'TRIM36', 'score': 4.46}, {'connected_gene': 'LOC105379130', 'score': 0.37}, {'connected_gene': 'LOC105379129', 'score': 0.23}]
chr5	GH05I115180	115180000	115180401	1.57	[{'connected_gene': 'TRIM36', 'score': 550.77}, {'connected_gene': 'TRIM36-IT1', 'score': 0.29}]
chr5	GH05I115181	115180563	115180622	1.06	[{'connected_gene': 'TRIM36', 'score': 557.39}, {'connected_gene': 'ENSG00000249791', 'score': 0.44}]
chr5	GH05I115149	115149594	115149653	0.5	[{'connected_gene': 'TRIM36-IT1', 'score': 550.77}, {'connected_gene': 'TRIM36', 'score': 550.29}, {'connected_gene': 'ENSG00000250242', 'score': 0.21}]