PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000288167	[[53880606, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53889320, 53889368], [53890870, 53891013], [53891642, 53891717], [53892745, 53892845], [53894156, 53894255], [53898772, 53899827]]	[[53880615, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53889320, 53889368], [53890870, 53891013], [53891642, 53891717], [53892745, 53892845], [53894156, 53894255], [53898772, 53899335]]
ENST00000475124	[[53880610, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53889320, 53889368], [53890870, 53891013], [53891642, 53892845], [53894156, 53894255], [53898772, 53899615]]	None
ENST00000494338	[[53880611, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53890870, 53891013], [53891642, 53891717], [53892745, 53892845], [53894156, 53894255], [53898772, 53898918]]	[[53880615, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53890870, 53891013], [53891642, 53891717], [53892745, 53892845], [53894156, 53894255], [53898772, 53898918]]
NM_018725	[[53880576, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53889320, 53889368], [53890870, 53891013], [53891642, 53891717], [53892745, 53892845], [53894156, 53894255], [53898772, 53899827]]	[[53880615, 53880675], [53882690, 53882715], [53883681, 53883822], [53886025, 53886153], [53886897, 53887024], [53889320, 53889368], [53890870, 53891013], [53891642, 53891717], [53892745, 53892845], [53894156, 53894255], [53898772, 53899335]]

Promoter

Chrom	Start	End	Description
chr3	53880588	53880603	CAGE_peak_1_at_IL17RB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I053725	53725631	53725928	0.39	[{'connected_gene': 'IL17RB', 'score': 10.9}, {'connected_gene': 'ACTR8', 'score': 10.77}, {'connected_gene': 'PIR47826', 'score': 0.26}, {'connected_gene': 'GC03P053782', 'score': 0.22}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053765	53765823	53766882	0.52	[{'connected_gene': 'IL17RB', 'score': 8.92}, {'connected_gene': 'ACTR8', 'score': 4.48}, {'connected_gene': 'GC03P053782', 'score': 0.37}, {'connected_gene': 'PIR47826', 'score': 0.17}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053767	53767438	53768302	0.31	[{'connected_gene': 'IL17RB', 'score': 8.66}, {'connected_gene': 'ENSG00000271916', 'score': 5.0}, {'connected_gene': 'GC03P053782', 'score': 0.37}, {'connected_gene': 'PIR47826', 'score': 0.17}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053743	53743542	53745031	0.43	[{'connected_gene': 'IL17RB', 'score': 8.72}, {'connected_gene': 'GC03P053782', 'score': 0.28}, {'connected_gene': 'PIR47826', 'score': 0.21}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053772	53772613	53774410	1.15	[{'connected_gene': 'IL17RB', 'score': 7.92}, {'connected_gene': 'GC03P053782', 'score': 0.44}, {'connected_gene': 'PIR47826', 'score': 0.16}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053768	53768835	53769881	0.52	[{'connected_gene': 'IL17RB', 'score': 5.46}, {'connected_gene': 'GC03P053782', 'score': 0.39}, {'connected_gene': 'PIR47826', 'score': 0.17}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053747	53747975	53750825	1.15	[{'connected_gene': 'IL17RB', 'score': 9.12}, {'connected_gene': 'SELENOK', 'score': 2.88}, {'connected_gene': 'DCP1A', 'score': 2.03}, {'connected_gene': 'GC03P053782', 'score': 0.29}, {'connected_gene': 'PIR47826', 'score': 0.2}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I054322	54322073	54323063	0.74	[{'connected_gene': 'IL17RB', 'score': 5.83}, {'connected_gene': 'PIR51414', 'score': 0.1}, {'connected_gene': 'CACNA2D3', 'score': 0.08}]
chr3	GH03I053776	53776932	53777918	0.38	[{'connected_gene': 'IL17RB', 'score': 17.78}, {'connected_gene': 'CHDH', 'score': 10.6}, {'connected_gene': 'GC03P053782', 'score': 0.44}, {'connected_gene': 'PIR47826', 'score': 0.15}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053837	53837939	53838997	0.2	[{'connected_gene': 'IL17RB', 'score': 24.38}, {'connected_gene': 'CHDH', 'score': 0.44}, {'connected_gene': 'ENSG00000271916', 'score': 0.26}]
chr3	GH03I053820	53820900	53822443	0.51	[{'connected_gene': 'IL17RB', 'score': 26.69}, {'connected_gene': 'CHDH', 'score': 11.98}, {'connected_gene': 'ENSG00000271916', 'score': 0.34}]
chr3	GH03I053841	53841135	53847118	2.65	[{'connected_gene': 'IL17RB', 'score': 580.34}, {'connected_gene': 'CHDH', 'score': 557.04}, {'connected_gene': 'ENSG00000271916', 'score': 0.25}]
chr3	GH03I053795	53795314	53795403	0.2	[{'connected_gene': 'CHDH', 'score': 11.32}, {'connected_gene': 'IL17RB', 'score': 11.32}, {'connected_gene': 'ENSG00000271916', 'score': 6.49}, {'connected_gene': 'GC03P053782', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053794	53794666	53795280	0.43	[{'connected_gene': 'CHDH', 'score': 11.32}, {'connected_gene': 'IL17RB', 'score': 11.32}, {'connected_gene': 'ENSG00000271916', 'score': 0.77}, {'connected_gene': 'GC03P053782', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.04}]
chr3	GH03I053775	53775682	53776865	0.52	[{'connected_gene': 'CHDH', 'score': 10.61}, {'connected_gene': 'IL17RB', 'score': 10.61}, {'connected_gene': 'GC03P053782', 'score': 0.44}, {'connected_gene': 'PIR47826', 'score': 0.15}, {'connected_gene': 'CACNA1D', 'score': 0.05}]
chr3	GH03I053824	53824501	53825447	0.2	[{'connected_gene': 'CHDH', 'score': 11.98}, {'connected_gene': 'IL17RB', 'score': 11.98}, {'connected_gene': 'ENSG00000271916', 'score': 8.0}]
chr3	GH03I053783	53783792	53784812	0.2	[{'connected_gene': 'GC03P053782', 'score': 550.77}, {'connected_gene': 'IL17RB', 'score': 4.7}, {'connected_gene': 'ENSG00000271916', 'score': 0.39}, {'connected_gene': 'CACNA1D', 'score': 0.05}]