PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000445392	[[4836685, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874865], [4875988, 4876236], [4917235, 4917834], [4923226, 4923285]]	[[4874424, 4874865], [4875988, 4876236], [4917235, 4917770]]
ENST00000399583	[[4838735, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4917235, 4917834], [4923226, 4923350]]	[[4839008, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4917235, 4917770]]
ENST00000473130	[[4838739, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862181], [4871771, 4871840]]	None
ENST00000536091	[[4838739, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4917235, 4917834], [4923226, 4923295]]	[[4856034, 4856096], [4856869, 4856982], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4917235, 4917770]]
ENST00000538469	[[4838847, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4877459, 4877688]]	[[4839008, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874870], [4875988, 4876051]]
ENST00000469399	[[4844875, 4845347], [4854908, 4854964]]	None
ENST00000472999	[[4838735, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843699]]	None
ENST00000484211	[[4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871850]]	None
ENST00000457174	[[4917368, 4917834], [4921739, 4921840]]	[[4917368, 4917770]]
NM_018059	[[4838739, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4917235, 4917834], [4923226, 4923335]]	[[4839008, 4839114], [4839260, 4839400], [4839801, 4839941], [4841283, 4841626], [4843176, 4843385], [4845196, 4845347], [4854908, 4855081], [4855858, 4856096], [4856869, 4856982], [4862024, 4862185], [4871771, 4871809], [4874237, 4874870], [4875988, 4876236], [4917235, 4917770]]

Promoter

Chrom	Start	End	Description
chr7	4877677	4877693	CAGE_peak_5_at_RADIL_5end
chr7	4923259	4923310	CAGE_peak_2_at_RADIL_5end
chr7	4923315	4923360	CAGE_peak_1_at_RADIL_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr7	GH07I004741	4741619	4750167	1.43	[{'connected_gene': 'AP5Z1', 'score': 19.08}, {'connected_gene': 'ZNF890P', 'score': 7.24}, {'connected_gene': 'RBAKDN', 'score': 5.49}, {'connected_gene': 'FOXK1', 'score': 5.43}, {'connected_gene': 'RADIL', 'score': 4.69}, {'connected_gene': 'PIR62911', 'score': 0.44}, {'connected_gene': 'PIR42800', 'score': 0.37}]
chr7	GH07I004774	4774110	4777213	2.07	[{'connected_gene': 'AP5Z1', 'score': 571.4}, {'connected_gene': 'RBAK', 'score': 18.73}, {'connected_gene': 'RNF216P1', 'score': 13.13}, {'connected_gene': 'TNRC18', 'score': 11.56}, {'connected_gene': 'RADIL', 'score': 11.05}, {'connected_gene': 'GC07P004785', 'score': 0.39}]
chr7	GH07I004791	4791039	4793358	0.79	[{'connected_gene': 'AP5Z1', 'score': 12.49}, {'connected_gene': 'RADIL', 'score': 8.92}, {'connected_gene': 'MIR4656', 'score': 0.77}, {'connected_gene': 'GC07P004785', 'score': 0.44}, {'connected_gene': 'GC07P004807', 'score': 0.37}]
chr7	GH07I004845	4845707	4846466	0.82	[{'connected_gene': 'AP5Z1', 'score': 4.72}, {'connected_gene': 'PIR34147', 'score': 0.39}, {'connected_gene': 'ENSG00000206895', 'score': 0.29}, {'connected_gene': 'GC07M004814', 'score': 0.29}, {'connected_gene': 'RADIL', 'score': 0.28}]
chr7	GH07I004798	4798200	4798601	0.89	[{'connected_gene': 'AP5Z1', 'score': 10.38}, {'connected_gene': 'MIR4656', 'score': 0.44}, {'connected_gene': 'GC07P004807', 'score': 0.44}, {'connected_gene': 'RADIL', 'score': 0.17}]
chr7	GH07I005392	5392869	5399667	1.32	[{'connected_gene': 'TNRC18', 'score': 7.43}, {'connected_gene': 'RADIL', 'score': 5.02}, {'connected_gene': 'ENSG00000241269', 'score': 0.34}, {'connected_gene': 'GC07P005375', 'score': 0.34}]
chr7	GH07I004819	4819357	4820901	0.2	[{'connected_gene': 'RADIL', 'score': 9.54}, {'connected_gene': 'AP5Z1', 'score': 5.97}, {'connected_gene': 'ENSG00000206895', 'score': 0.44}, {'connected_gene': 'GC07M004814', 'score': 0.44}, {'connected_gene': 'PIR34147', 'score': 0.28}]
chr7	GH07I004837	4837035	4837097	0.33	[{'connected_gene': 'RADIL', 'score': 12.47}, {'connected_gene': 'AP5Z1', 'score': 4.59}, {'connected_gene': 'PIR34147', 'score': 0.34}, {'connected_gene': 'ENSG00000206895', 'score': 0.31}, {'connected_gene': 'GC07M004814', 'score': 0.31}]
chr7	GH07I005088	5088570	5088719	0.56	[{'connected_gene': 'RADIL', 'score': 10.99}, {'connected_gene': 'WIPI2', 'score': 10.64}, {'connected_gene': 'AP5Z1', 'score': 10.39}, {'connected_gene': 'OR10AH1P', 'score': 0.37}, {'connected_gene': 'RBAKDN', 'score': 0.37}]
chr7	GH07I005085	5085386	5085818	0.91	[{'connected_gene': 'RADIL', 'score': 10.99}, {'connected_gene': 'WIPI2', 'score': 10.64}, {'connected_gene': 'AP5Z1', 'score': 10.4}, {'connected_gene': 'RBAKDN', 'score': 0.39}, {'connected_gene': 'OR10AH1P', 'score': 0.37}]
chr7	GH07I004881	4881679	4883919	1.9	[{'connected_gene': 'RADIL', 'score': 569.9}, {'connected_gene': 'RPL22P16', 'score': 0.37}]
chr7	GH07I004871	4871968	4873366	0.54	[{'connected_gene': 'RADIL', 'score': 28.02}, {'connected_gene': 'RPL22P16', 'score': 0.44}]
chr7	GH07I004873	4873918	4874056	0.22	[{'connected_gene': 'RADIL', 'score': 0.44}, {'connected_gene': 'RPL22P16', 'score': 0.44}]
chr7	GH07I004808	4808500	4808799	0.2	[{'connected_gene': 'GC07P004807', 'score': 550.77}, {'connected_gene': 'AP5Z1', 'score': 18.07}, {'connected_gene': 'RADIL', 'score': 4.65}, {'connected_gene': 'ENSG00000206895', 'score': 0.77}, {'connected_gene': 'GC07M004814', 'score': 0.77}]
chr7	GH07I004809	4809015	4809640	0.46	[{'connected_gene': 'ENSG00000206895', 'score': 550.77}, {'connected_gene': 'GC07P004807', 'score': 550.77}, {'connected_gene': 'GC07M004814', 'score': 550.77}, {'connected_gene': 'AP5Z1', 'score': 17.66}, {'connected_gene': 'RADIL', 'score': 11.21}]
chr7	GH07I004861	4861464	4862087	0.88	[{'connected_gene': 'PIR34147', 'score': 550.77}, {'connected_gene': 'PAPOLB', 'score': 550.77}, {'connected_gene': 'RADIL', 'score': 13.01}]
chr7	GH07I004714	4714601	4716253	1.41	[{'connected_gene': 'GC07M004681', 'score': 550.77}, {'connected_gene': 'RADIL', 'score': 4.7}, {'connected_gene': 'PIR62911', 'score': 0.34}, {'connected_gene': 'FOXK1', 'score': 0.19}]
chr7	GH07I004807	4807830	4807979	0.38	[{'connected_gene': 'GC07P004807', 'score': 550.77}, {'connected_gene': 'ENSG00000206895', 'score': 0.77}, {'connected_gene': 'GC07M004814', 'score': 0.77}, {'connected_gene': 'RADIL', 'score': 0.18}]
chr7	GH07I004830	4830210	4830419	0.91	[{'connected_gene': 'ENSG00000206895', 'score': 0.37}, {'connected_gene': 'GC07M004814', 'score': 0.37}, {'connected_gene': 'PIR34147', 'score': 0.31}, {'connected_gene': 'RADIL', 'score': 0.23}]
chr7	GH07I004825	4825090	4825224	0.52	[{'connected_gene': 'ENSG00000206895', 'score': 0.39}, {'connected_gene': 'GC07M004814', 'score': 0.39}, {'connected_gene': 'PIR34147', 'score': 0.29}, {'connected_gene': 'RADIL', 'score': 0.22}]
chr7	GH07I004765	4765748	4770194	0.58	[{'connected_gene': 'PIR61632', 'score': 550.77}, {'connected_gene': 'PIR39599', 'score': 550.77}, {'connected_gene': 'PIR47511', 'score': 550.77}, {'connected_gene': 'GC07P004766', 'score': 550.77}, {'connected_gene': 'FOXK1', 'score': 31.54}, {'connected_gene': 'AP5Z1', 'score': 7.64}, {'connected_gene': 'RBAKDN', 'score': 5.87}, {'connected_gene': 'RADIL', 'score': 5.84}, {'connected_gene': 'GC07P004765', 'score': 0.77}]