PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000376747	[[96453833, 96454066], [96485180, 96485307], [96489339, 96489456], [96505796, 96505911], [96506568, 96506729], [96508411, 96508594], [96511844, 96511929], [96513041, 96513137], [96515882, 96515968], [96519592, 96519677], [96529532, 96529618], [96529951, 96530110], [96536744, 96536934], [96540145, 96540225], [96543115, 96543218], [96546815, 96546911], [96547433, 96547558], [96553060, 96553192], [96555107, 96555314], [96577933, 96578028], [96579281, 96579380], [96579466, 96579590], [96589177, 96589342], [96592210, 96592345], [96599290, 96599426], [96600249, 96600335], [96601588, 96601708], [96622365, 96622516], [96624833, 96624925], [96636057, 96636118], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705637]]	[[96454043, 96454066], [96485180, 96485307], [96489339, 96489456], [96505796, 96505911], [96506568, 96506729], [96508411, 96508594], [96511844, 96511929], [96513041, 96513137], [96515882, 96515968], [96519592, 96519677], [96529532, 96529618], [96529951, 96530110], [96536744, 96536934], [96540145, 96540225], [96543115, 96543218], [96546815, 96546911], [96547433, 96547558], [96553060, 96553192], [96555107, 96555314], [96577933, 96578028], [96579281, 96579380], [96579466, 96579590], [96589177, 96589342], [96592210, 96592345], [96599290, 96599426], [96600249, 96600335], [96601588, 96601708], [96622365, 96622516], [96624833, 96624925], [96636057, 96636118], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705566]]
ENST00000462472	[[96506705, 96506729], [96508411, 96508594], [96511844, 96512149]]	None
ENST00000476866	[[96515687, 96515968], [96519592, 96519677], [96529532, 96529594]]	None
ENST00000491509	[[96519592, 96519677], [96529532, 96529618], [96529951, 96530110], [96536744, 96536934], [96539526, 96539647], [96540145, 96540225], [96543115, 96543218], [96546815, 96546824]]	None
ENST00000463054	[[96529155, 96530110], [96536744, 96536934], [96540145, 96540225], [96543115, 96543218], [96546815, 96546911], [96547433, 96547502]]	None
ENST00000465196	[[96635776, 96635849], [96636057, 96636118], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665665]]	None
ENST00000376714	[[96635777, 96635849], [96636057, 96636118], [96638586, 96638686], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705736]]	[[96638679, 96638686], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705566]]
ENST00000461329	[[96637157, 96637591], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561]]	None
ENST00000397618	[[96637163, 96637591], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705654]]	[[96637503, 96637591], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705566]]
ENST00000467305	[[96637300, 96637591], [96638586, 96638686], [96641774, 96641852], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665730]]	None
ENST00000376712	[[96642398, 96643727], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705647]]	[[96643714, 96643727], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705566]]
NM_020121	[[96453833, 96454066], [96485180, 96485307], [96489339, 96489456], [96505796, 96505911], [96506568, 96506729], [96508411, 96508594], [96511844, 96511929], [96513041, 96513137], [96515882, 96515968], [96519592, 96519677], [96529532, 96529618], [96529951, 96530110], [96536744, 96536934], [96540145, 96540225], [96543115, 96543218], [96546815, 96546911], [96547433, 96547558], [96553060, 96553192], [96555107, 96555314], [96577933, 96578028], [96579281, 96579380], [96579466, 96579590], [96589177, 96589342], [96592210, 96592345], [96599290, 96599426], [96600249, 96600335], [96601588, 96601708], [96622365, 96622516], [96624833, 96624925], [96636057, 96636118], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705736]]	[[96454043, 96454066], [96485180, 96485307], [96489339, 96489456], [96505796, 96505911], [96506568, 96506729], [96508411, 96508594], [96511844, 96511929], [96513041, 96513137], [96515882, 96515968], [96519592, 96519677], [96529532, 96529618], [96529951, 96530110], [96536744, 96536934], [96540145, 96540225], [96543115, 96543218], [96546815, 96546911], [96547433, 96547558], [96553060, 96553192], [96555107, 96555314], [96577933, 96578028], [96579281, 96579380], [96579466, 96579590], [96589177, 96589342], [96592210, 96592345], [96599290, 96599426], [96600249, 96600335], [96601588, 96601708], [96622365, 96622516], [96624833, 96624925], [96636057, 96636118], [96638586, 96638686], [96642226, 96642327], [96648316, 96648389], [96651464, 96651561], [96665560, 96665735], [96675293, 96675406], [96675882, 96676013], [96684142, 96684225], [96705408, 96705566]]

Promoter

Chrom	Start	End	Description
chr13	96705608	96705619	CAGE_peak_2_at_UGGT2_5end
chr13	96705624	96705677	CAGE_peak_1_at_UGGT2_5end
chr13	96706062	96706067	CAGE_peak_3_at_UGGT2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I095675	95675139	95678801	2.05	[{'connected_gene': 'DNAJC3', 'score': 564.34}, {'connected_gene': 'DNAJC3-AS1', 'score': 550.77}, {'connected_gene': 'DZIP1', 'score': 19.93}, {'connected_gene': 'UGGT2', 'score': 14.38}]
chr13	GH13I095775	95775148	95775391	0.25	[{'connected_gene': 'UGGT2', 'score': 9.04}, {'connected_gene': 'GC13P095793', 'score': 0.37}, {'connected_gene': 'ENSG00000276809', 'score': 0.29}, {'connected_gene': 'DNAJC3', 'score': 0.15}]
chr13	GH13I095783	95783588	95785408	0.79	[{'connected_gene': 'UGGT2', 'score': 14.72}, {'connected_gene': 'GC13P095793', 'score': 0.44}, {'connected_gene': 'ENSG00000276809', 'score': 0.28}, {'connected_gene': 'DNAJC3', 'score': 0.14}]
chr13	GH13I096104	96104627	96104776	0.57	[{'connected_gene': 'UGGT2', 'score': 10.13}, {'connected_gene': 'HS6ST3', 'score': 0.39}, {'connected_gene': 'RN7SL164P', 'score': 0.21}]
chr13	GH13I096294	96294927	96296564	0.43	[{'connected_gene': 'UGGT2', 'score': 9.09}, {'connected_gene': 'GC13P096305', 'score': 0.44}, {'connected_gene': 'GC13M096277', 'score': 0.37}, {'connected_gene': 'HS6ST3', 'score': 0.08}]
chr13	GH13I096342	96342864	96343757	0.2	[{'connected_gene': 'UGGT2', 'score': 7.98}, {'connected_gene': 'GC13M096368', 'score': 0.28}, {'connected_gene': 'GC13P096305', 'score': 0.26}, {'connected_gene': 'HS6ST3', 'score': 0.07}]
chr13	GH13I095714	95714067	95715486	0.88	[{'connected_gene': 'UGGT2', 'score': 14.43}, {'connected_gene': 'PIR47331', 'score': 0.44}, {'connected_gene': 'MTCYBP3', 'score': 0.34}, {'connected_gene': 'DNAJC3', 'score': 0.28}]
chr13	GH13I095707	95707169	95708800	0.63	[{'connected_gene': 'UGGT2', 'score': 15.24}, {'connected_gene': 'MTCYBP3', 'score': 0.39}, {'connected_gene': 'PIR47331', 'score': 0.37}, {'connected_gene': 'DNAJC3', 'score': 0.29}]
chr13	GH13I095953	95953731	95955448	0.43	[{'connected_gene': 'UGGT2', 'score': 24.33}, {'connected_gene': 'GC13M095889', 'score': 0.22}, {'connected_gene': 'GC13P096022', 'score': 0.2}]
chr13	GH13I095924	95924248	95924876	0.72	[{'connected_gene': 'UGGT2', 'score': 24.24}, {'connected_gene': 'GC13M095889', 'score': 0.31}, {'connected_gene': 'GC13P096022', 'score': 0.15}]
chr13	GH13I096019	96019159	96021362	0.77	[{'connected_gene': 'UGGT2', 'score': 20.26}, {'connected_gene': 'GC13P096022', 'score': 0.77}, {'connected_gene': 'GC13M095889', 'score': 0.13}]
chr13	GH13I096052	96052400	96054200	2.01	[{'connected_gene': 'UGGT2', 'score': 570.56}, {'connected_gene': 'GC13P096022', 'score': 0.29}]
chr13	GH13I095999	95999649	96000816	0.46	[{'connected_gene': 'HS6ST3', 'score': 15.14}, {'connected_gene': 'UGGT2', 'score': 14.24}, {'connected_gene': 'GC13P096022', 'score': 0.34}, {'connected_gene': 'GC13M095889', 'score': 0.15}]
chr13	GH13I096089	96089808	96091201	1.8	[{'connected_gene': 'HS6ST3', 'score': 550.77}, {'connected_gene': 'UGGT2', 'score': 9.11}]
chr13	GH13I096034	96034392	96035476	0.31	[{'connected_gene': 'HS6ST3', 'score': 15.2}, {'connected_gene': 'GC13P096022', 'score': 0.39}, {'connected_gene': 'UGGT2', 'score': 0.37}]
chr13	GH13I095835	95835829	95836026	0.22	[{'connected_gene': 'DZIP1', 'score': 10.49}, {'connected_gene': 'DNAJC3', 'score': 6.15}, {'connected_gene': 'HMGN1P24', 'score': 0.31}, {'connected_gene': 'GC13M095889', 'score': 0.21}, {'connected_gene': 'UGGT2', 'score': 0.08}]
chr13	GH13I095679	95679267	95679416	0.31	[{'connected_gene': 'DZIP1', 'score': 11.27}, {'connected_gene': 'UGGT2', 'score': 5.58}, {'connected_gene': 'DNAJC3', 'score': 0.77}, {'connected_gene': 'MTND5P2', 'score': 0.39}]
chr13	GH13I096274	96274344	96275423	0.69	[{'connected_gene': 'DZIP1', 'score': 22.12}, {'connected_gene': 'UGGT2', 'score': 15.69}, {'connected_gene': 'GC13M096277', 'score': 0.77}, {'connected_gene': 'GC13M096146', 'score': 0.37}, {'connected_gene': 'HS6ST3', 'score': 0.09}]
chr13	GH13I095642	95642957	95645253	1.84	[{'connected_gene': 'DZIP1', 'score': 562.24}, {'connected_gene': 'UGGT2', 'score': 11.38}, {'connected_gene': 'DNAJC3-AS1', 'score': 10.69}, {'connected_gene': 'CLDN10', 'score': 4.31}, {'connected_gene': 'GC13M095581', 'score': 0.22}]
chr13	GH13I095834	95834200	95834600	0.89	[{'connected_gene': 'DZIP1', 'score': 11.01}, {'connected_gene': 'HMGN1P24', 'score': 0.34}, {'connected_gene': 'GC13M095889', 'score': 0.21}, {'connected_gene': 'UGGT2', 'score': 0.08}]
chr13	GH13I095554	95554001	95554400	0.49	[{'connected_gene': 'CLDN10-AS1', 'score': 5.76}, {'connected_gene': 'UGGT2', 'score': 4.57}, {'connected_gene': 'GC13P095540', 'score': 0.39}, {'connected_gene': 'GC13M095580', 'score': 0.34}, {'connected_gene': 'CLDN10', 'score': 0.13}]
chr13	GH13I096649	96649821	96651110	0.54	[{'connected_gene': 'GC13P096650', 'score': 550.77}, {'connected_gene': 'UGGT2', 'score': 6.39}, {'connected_gene': 'HSP90AB6P', 'score': 0.07}, {'connected_gene': 'HS6ST3', 'score': 0.03}]
chr13	GH13I096001	96001401	96001600	0.2	[{'connected_gene': 'GC13P096022', 'score': 0.34}, {'connected_gene': 'UGGT2', 'score': 0.23}, {'connected_gene': 'GC13M095889', 'score': 0.15}]
chr13	GH13I095540	95540511	95541639	0.31	[{'connected_gene': 'GC13P095540', 'score': 550.77}, {'connected_gene': 'DZIP1', 'score': 10.84}, {'connected_gene': 'CLDN10', 'score': 9.26}, {'connected_gene': 'UGGT2', 'score': 6.13}, {'connected_gene': 'DNAJC3', 'score': 4.65}, {'connected_gene': 'GC13M095580', 'score': 0.28}]
chr13	GH13I095858	95858724	95859400	0.84	[{'connected_gene': 'GC13M095889', 'score': 0.28}, {'connected_gene': 'HMGN1P24', 'score': 0.25}, {'connected_gene': 'UGGT2', 'score': 0.08}]
chr13	GH13I095896	95896407	95896556	0.62	[{'connected_gene': 'GC13M095889', 'score': 550.77}, {'connected_gene': 'HMGN1P24', 'score': 0.17}, {'connected_gene': 'UGGT2', 'score': 0.1}]