PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000299240	[[43380481, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43457713, 43457884], [43464874, 43465134], [43465605, 43465759], [43467480, 43468269]]	[[43380504, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43457713, 43457884], [43464874, 43465134], [43465605, 43465759], [43467480, 43467515]]
ENST00000039989	[[43380490, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43464874, 43465134], [43465605, 43465759], [43469551, 43469672], [43471631, 43471791], [43472731, 43472815], [43511788, 43511908], [43513569, 43513713], [43515322, 43516483]]	[[43380504, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43464874, 43465134], [43465605, 43465759], [43469551, 43469672], [43471631, 43471791], [43472731, 43472815], [43511788, 43511908], [43513569, 43513713], [43515322, 43515454]]
ENST00000534347	[[43380503, 43380663], [43391628, 43391935], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413420]]	[[43380504, 43380663], [43391628, 43391634]]
ENST00000525543	[[43470152, 43471791], [43472731, 43472815], [43511788, 43511908], [43513569, 43513713], [43515322, 43516477]]	None
ENST00000533072	[[43512267, 43513713], [43515322, 43516483]]	None
ENST00000530469	[[43400807, 43400872], [43411201, 43411371], [43413014, 43413338]]	None
ENST00000526774	[[43417685, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43457713, 43457884], [43464874, 43465134], [43465605, 43465759], [43467480, 43468094]]	None
ENST00000524936	[[43418546, 43419041], [43419523, 43419608]]	None
ENST00000525029	[[43419582, 43419663], [43421437, 43421598], [43422995, 43423172]]	[[43419582, 43419663], [43421437, 43421598], [43422995, 43423172]]
ENST00000530483	[[43425601, 43425694], [43427063, 43427426]]	None
ENST00000534417	[[43457771, 43457884], [43464874, 43465134], [43465605, 43466055]]	None
ENST00000525135	[[43469133, 43469672], [43471631, 43471791], [43472731, 43472815], [43511788, 43511908], [43513569, 43513714]]	None
ENST00000533554	[[43471687, 43471791], [43472731, 43472815], [43489705, 43489913]]	None
ENST00000418561	[[43472729, 43472815], [43507965, 43508001], [43511788, 43511908], [43513569, 43513713], [43515322, 43515511]]	[[43472729, 43472815], [43507965, 43508001], [43511788, 43511908], [43513569, 43513713], [43515322, 43515454]]
ENST00000529140	[[43511346, 43511908], [43513569, 43513713], [43515322, 43515633]]	None
NM_001307943	[[43380434, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43457713, 43457884], [43464874, 43465134], [43465605, 43465759], [43467480, 43468092]]	[[43380504, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43457713, 43457884], [43464874, 43465134], [43465605, 43465759], [43467480, 43467515]]
NM_018259	[[43380434, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43464874, 43465134], [43465605, 43465759], [43469551, 43469672], [43471631, 43471791], [43472731, 43472815], [43511788, 43511908], [43513569, 43513713], [43515322, 43516483]]	[[43380504, 43380663], [43400782, 43400872], [43411201, 43411371], [43413014, 43413126], [43413370, 43413502], [43418258, 43418368], [43418896, 43419041], [43419523, 43419663], [43421437, 43421598], [43422995, 43423108], [43425547, 43425694], [43427063, 43427179], [43427335, 43427501], [43428687, 43428765], [43428902, 43429127], [43436139, 43436326], [43464874, 43465134], [43465605, 43465759], [43469551, 43469672], [43471631, 43471791], [43472731, 43472815], [43511788, 43511908], [43513569, 43513713], [43515322, 43515454]]

Promoter

Chrom	Start	End	Description
chr11	43380459	43380537	CAGE_peak_1_at_TTC17_5end
chr11	43380605	43380617	CAGE_peak_2_at_TTC17_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I043375	43375838	43377311	0.66	[{'connected_gene': 'API5', 'score': 5.09}, {'connected_gene': 'ENSG00000255340', 'score': 0.44}, {'connected_gene': 'ENSG00000254907', 'score': 0.37}, {'connected_gene': 'TTC17', 'score': 0.37}]
chr11	GH11I044065	44065295	44067520	2.03	[{'connected_gene': 'ACCS', 'score': 625.6}, {'connected_gene': 'EXT2', 'score': 21.13}, {'connected_gene': 'SEC14L1P1', 'score': 11.64}, {'connected_gene': 'ALKBH3', 'score': 10.54}, {'connected_gene': 'TTC17', 'score': 10.27}, {'connected_gene': 'ALKBH3-AS1', 'score': 10.01}, {'connected_gene': 'C11orf96', 'score': 10.01}, {'connected_gene': 'ENSG00000255165', 'score': 0.44}, {'connected_gene': 'GC11P043987', 'score': 0.18}]
chr11	GH11I043409	43409683	43411527	0.62	[{'connected_gene': 'TTC17', 'score': 5.18}, {'connected_gene': 'API5', 'score': 5.01}, {'connected_gene': 'ENSG00000254577', 'score': 0.34}, {'connected_gene': 'RN7SKP287', 'score': 0.34}]
chr11	GH11I043338	43338646	43339003	0.25	[{'connected_gene': 'TTC17', 'score': 1.64}, {'connected_gene': 'ENSG00000252652', 'score': 0.44}, {'connected_gene': 'ENSG00000254907', 'score': 0.34}, {'connected_gene': 'API5', 'score': 0.31}]
chr11	GH11I043357	43357913	43360918	2.06	[{'connected_gene': 'TTC17', 'score': 564.54}, {'connected_gene': 'ENSG00000254907', 'score': 550.77}, {'connected_gene': 'SEC14L1P1', 'score': 11.57}, {'connected_gene': 'ALKBH3', 'score': 10.48}, {'connected_gene': 'ACCS', 'score': 10.11}, {'connected_gene': 'EXT2', 'score': 9.98}, {'connected_gene': 'API5', 'score': 6.46}, {'connected_gene': 'ENSG00000255340', 'score': 0.31}]
chr11	GH11I043130	43130691	43130840	0.38	[{'connected_gene': 'TTC17', 'score': 5.44}, {'connected_gene': 'ENSG00000254725', 'score': 0.21}, {'connected_gene': 'HNRNPKP3', 'score': 0.12}]
chr11	GH11I043135	43135682	43136870	0.6	[{'connected_gene': 'TTC17', 'score': 5.33}, {'connected_gene': 'ENSG00000254725', 'score': 0.19}, {'connected_gene': 'HNRNPKP3', 'score': 0.12}]
chr11	GH11I043268	43268051	43269875	0.38	[{'connected_gene': 'HNRNPKP3', 'score': 550.77}, {'connected_gene': 'API5', 'score': 6.73}, {'connected_gene': 'TTC17', 'score': 5.38}, {'connected_gene': 'ENSG00000254725', 'score': 0.08}]
chr11	GH11I043941	43941116	43946058	2.13	[{'connected_gene': 'C11orf96', 'score': 550.37}, {'connected_gene': 'SEC14L1P1', 'score': 17.47}, {'connected_gene': 'ALKBH3', 'score': 14.45}, {'connected_gene': 'EXT2', 'score': 14.41}, {'connected_gene': 'ENSG00000254907', 'score': 14.19}, {'connected_gene': 'TTC17', 'score': 13.93}, {'connected_gene': 'ACCS', 'score': 13.88}, {'connected_gene': 'ALKBH3-AS1', 'score': 11.8}, {'connected_gene': 'ENSG00000254409', 'score': 11.8}, {'connected_gene': 'LOC105376644', 'score': 10.33}, {'connected_gene': 'ENSG00000244953', 'score': 6.29}, {'connected_gene': 'ACCSL', 'score': 0.34}]
chr11	GH11I043904	43904592	43907143	1.19	[{'connected_gene': 'ALKBH3', 'score': 27.9}, {'connected_gene': 'LOC105376644', 'score': 21.51}, {'connected_gene': 'PPIAP41', 'score': 17.1}, {'connected_gene': 'API5', 'score': 16.68}, {'connected_gene': 'TTC17', 'score': 10.87}, {'connected_gene': 'SEC14L1P1', 'score': 0.44}, {'connected_gene': 'ALKBH3-AS1', 'score': 0.37}]
chr11	GH11I043366	43366273	43368242	0.97	[{'connected_gene': 'ENSG00000254577', 'score': 11.34}, {'connected_gene': 'API5', 'score': 4.94}, {'connected_gene': 'ENSG00000254907', 'score': 0.44}, {'connected_gene': 'TTC17', 'score': 0.44}, {'connected_gene': 'ENSG00000255340', 'score': 0.37}]
chr11	GH11I043394	43394131	43394220	0.79	[{'connected_gene': 'ENSG00000254907', 'score': 11.68}, {'connected_gene': 'TTC17', 'score': 11.67}, {'connected_gene': 'ENSG00000254577', 'score': 0.77}, {'connected_gene': 'RN7SKP287', 'score': 0.26}]
chr11	GH11I043352	43352201	43352400	0.2	[{'connected_gene': 'ENSG00000254907', 'score': 0.44}, {'connected_gene': 'TTC17', 'score': 0.44}, {'connected_gene': 'ENSG00000252652', 'score': 0.34}]