PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000545606	[[67663060, 67663565], [67675689, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67713731]]	[[67663497, 67663565], [67675689, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67706610]]
ENST00000541058	[[67663169, 67663565], [67675689, 67675956]]	None
ENST00000539109	[[67663497, 67663565], [67664210, 67664575]]	None
ENST00000539434	[[67663505, 67663565], [67675689, 67675833], [67686401, 67686969]]	None
ENST00000540525	[[67663680, 67664040], [67675689, 67675833], [67686401, 67686424]]	[[67675693, 67675833], [67686401, 67686424]]
ENST00000535146	[[67688734, 67688936], [67691186, 67691443], [67691527, 67691628]]	None
ENST00000540319	[[67688799, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67699092], [67701176, 67701272], [67703680, 67703850], [67703931, 67705161]]	[[67688799, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67699092], [67701176, 67701215]]
ENST00000544619	[[67692751, 67692875], [67696102, 67696395], [67698384, 67698461], [67699322, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67708388]]	[[67692751, 67692875], [67696102, 67696395], [67698384, 67698461], [67699322, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67706610]]
NM_018448	[[67663060, 67663565], [67675689, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67708472]]	[[67663497, 67663565], [67675689, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67706610]]
NM_001329676	[[67663060, 67663565], [67675689, 67675833], [67685297, 67685407], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67708472]]	[[67675830, 67675833], [67685297, 67685407], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67706610]]
NM_001329675	[[67663060, 67663565], [67667285, 67667406], [67675689, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67708472]]	[[67675693, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67706610]]
NM_001329674	[[67663060, 67663565], [67667279, 67667406], [67675689, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67708472]]	[[67675693, 67675833], [67686401, 67686556], [67688812, 67688936], [67691186, 67691443], [67691527, 67691633], [67692729, 67692875], [67696102, 67696395], [67698384, 67698526], [67698883, 67700377], [67701176, 67701272], [67703680, 67703850], [67703931, 67704096], [67705472, 67705580], [67706385, 67706610]]

Promoter

Chrom	Start	End	Description
chr12	67663056	67663067	CAGE_peak_7_at_CAND1_5end
chr12	67663079	67663088	CAGE_peak_11_at_CAND1_5end
chr12	67663108	67663204	CAGE_peak_1_at_CAND1_5end
chr12	67663207	67663228	CAGE_peak_4_at_CAND1_5end
chr12	67663239	67663255	CAGE_peak_3_at_CAND1_5end
chr12	67663351	67663358	CAGE_peak_8_at_CAND1_5end
chr12	67663376	67663430	CAGE_peak_2_at_CAND1_5end
chr12	67663460	67663468	CAGE_peak_5_at_CAND1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I067067	67067729	67070564	1.29	[{'connected_gene': 'GRIP1', 'score': 557.26}, {'connected_gene': 'ENSG00000256248', 'score': 550.77}, {'connected_gene': 'CAND1', 'score': 15.09}, {'connected_gene': 'GGTA2P', 'score': 10.68}, {'connected_gene': 'ENSG00000279310', 'score': 0.77}, {'connected_gene': 'LOC102724421', 'score': 0.31}]
chr12	GH12I067719	67719780	67723687	1.02	[{'connected_gene': 'NUP107', 'score': 19.37}, {'connected_gene': 'CAND1', 'score': 13.55}, {'connected_gene': 'ENSG00000235872', 'score': 11.62}, {'connected_gene': 'LINC02421', 'score': 0.44}, {'connected_gene': 'LOC105369816', 'score': 0.26}]
chr12	GH12I067039	67039378	67041088	0.74	[{'connected_gene': 'CAND1', 'score': 11.6}, {'connected_gene': 'GRIP1', 'score': 0.31}, {'connected_gene': 'ENSG00000279310', 'score': 0.31}, {'connected_gene': 'ENSG00000256248', 'score': 0.31}, {'connected_gene': 'LOC102724421', 'score': 0.22}, {'connected_gene': 'GC12M066970', 'score': 0.2}]
chr12	GH12I067034	67034484	67035330	0.49	[{'connected_gene': 'CAND1', 'score': 21.85}, {'connected_gene': 'GRIP1', 'score': 0.29}, {'connected_gene': 'ENSG00000279310', 'score': 0.29}, {'connected_gene': 'ENSG00000256248', 'score': 0.29}, {'connected_gene': 'GC12M066970', 'score': 0.21}]
chr12	GH12I067320	67320482	67321642	0.46	[{'connected_gene': 'CAND1', 'score': 25.54}, {'connected_gene': 'GGTA2P', 'score': 10.77}, {'connected_gene': 'GC12P067317', 'score': 0.77}, {'connected_gene': 'MRPL40P1', 'score': 0.29}]
chr12	GH12I067592	67592158	67595180	1.02	[{'connected_gene': 'CAND1', 'score': 21.44}, {'connected_gene': 'ENSG00000235872', 'score': 10.53}, {'connected_gene': 'LINC02442', 'score': 0.77}, {'connected_gene': 'DYRK2', 'score': 0.23}]
chr12	GH12I067394	67394119	67395427	0.38	[{'connected_gene': 'CAND1', 'score': 9.16}, {'connected_gene': 'LOC105369813', 'score': 0.44}, {'connected_gene': 'NTAN1P3', 'score': 0.29}, {'connected_gene': 'LOC105369812', 'score': 0.26}]
chr12	GH12I067365	67365787	67367425	0.31	[{'connected_gene': 'CAND1', 'score': 14.1}, {'connected_gene': 'LOC105369812', 'score': 0.39}, {'connected_gene': 'LOC105369813', 'score': 0.34}]
chr12	GH12I067357	67357496	67360167	0.77	[{'connected_gene': 'CAND1', 'score': 14.81}, {'connected_gene': 'LOC105369812', 'score': 0.77}, {'connected_gene': 'LOC105369813', 'score': 0.31}]
chr12	GH12I067410	67410462	67412117	0.54	[{'connected_gene': 'CAND1', 'score': 7.76}, {'connected_gene': 'NTAN1P3', 'score': 0.39}, {'connected_gene': 'LOC105369813', 'score': 0.34}, {'connected_gene': 'LOC105369812', 'score': 0.22}]
chr12	GH12I067267	67267647	67272231	2.11	[{'connected_gene': 'CAND1', 'score': 565.26}, {'connected_gene': 'GC12M067262', 'score': 550.77}, {'connected_gene': 'GC12P067317', 'score': 0.25}]
chr12	GH12I067274	67274401	67274600	0.43	[{'connected_gene': 'CAND1', 'score': 0.44}, {'connected_gene': 'GC12P067317', 'score': 0.26}]
chr12	GH12I067388	67388361	67389118	0.54	[{'connected_gene': 'LOC105369813', 'score': 550.77}, {'connected_gene': 'CAND1', 'score': 10.58}, {'connected_gene': 'LOC105369812', 'score': 0.29}, {'connected_gene': 'NTAN1P3', 'score': 0.28}]
chr12	GH12I067354	67354287	67354764	0.4	[{'connected_gene': 'LOC105369812', 'score': 550.77}, {'connected_gene': 'CAND1', 'score': 14.07}, {'connected_gene': 'MRPL40P1', 'score': 0.77}]
chr12	GH12I067355	67355423	67356840	1	[{'connected_gene': 'LOC105369812', 'score': 550.77}, {'connected_gene': 'CAND1', 'score': 10.94}, {'connected_gene': 'LOC105369813', 'score': 0.29}]
chr12	GH12I067441	67441402	67442707	1.22	[{'connected_gene': 'LINC02420', 'score': 570.21}, {'connected_gene': 'ENSG00000235872', 'score': 10.22}, {'connected_gene': 'CAND1', 'score': 4.36}, {'connected_gene': 'NTAN1P3', 'score': 0.37}, {'connected_gene': 'LOC105369812', 'score': 0.17}]
chr12	GH12I067424	67424673	67432837	1.24	[{'connected_gene': 'LINC02420', 'score': 18.37}, {'connected_gene': 'ENSG00000235872', 'score': 10.17}, {'connected_gene': 'CAND1', 'score': 6.05}, {'connected_gene': 'NTAN1P3', 'score': 0.77}, {'connected_gene': 'LOC105369812', 'score': 0.19}]
chr12	GH12I066900	66900509	66901810	0.57	[{'connected_gene': 'GC12M066901', 'score': 550.77}, {'connected_gene': 'CAND1', 'score': 10.35}, {'connected_gene': 'GC12M066727', 'score': 0.1}, {'connected_gene': 'GRIP1', 'score': 0.1}, {'connected_gene': 'ENSG00000256248', 'score': 0.1}]