PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000506198	[[56262123, 56262563], [56290704, 56290810], [56291542, 56291824]]	[[56262356, 56262563], [56290704, 56290810], [56291542, 56291619]]
ENST00000381334	[[56262123, 56262563], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56292339]]	[[56262356, 56262563], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56291619]]
ENST00000508404	[[56262129, 56262563], [56269402, 56269505], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56291971]]	[[56262356, 56262563], [56269402, 56269426]]
ENST00000542052	[[56262129, 56262563], [56269402, 56269505], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56291971]]	[[56269487, 56269505], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56291619]]
ENST00000514070	[[56262417, 56262563], [56263285, 56263572]]	None
ENST00000511710	[[56265089, 56265420], [56277780, 56278006], [56283238, 56283412]]	None
ENST00000502797	[[56269409, 56269505], [56277780, 56278323]]	None
ENST00000514904	[[56281437, 56282324], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56291712]]	None
ENST00000508561	[[56283089, 56283414], [56283969, 56284015], [56284214, 56284331], [56290704, 56290810], [56291542, 56291704]]	None
ENST00000608091	[[56283295, 56283414], [56283969, 56284152], [56290704, 56290810], [56318405, 56319564]]	[[56283295, 56283414], [56283969, 56284152], [56290704, 56290810], [56318405, 56318473]]
ENST00000509575	[[56283857, 56284152], [56290704, 56290979]]	None
ENST00000506103	[[56284085, 56284331], [56290704, 56290810], [56318405, 56318625]]	[[56284085, 56284167]]
ENST00000515591	[[56289280, 56290810], [56291542, 56291798]]	None
NM_018475	[[56262079, 56262563], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56292342]]	[[56262356, 56262563], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56291619]]
NR_073070	[[56262079, 56262563], [56269402, 56269505], [56277780, 56278006], [56283238, 56283414], [56283969, 56284152], [56290704, 56290810], [56291542, 56292342]]	None

Promoter

Chrom	Start	End	Description
chr4	56261764	56261833	CAGE_peak_3_at_TMEM165_5end
chr4	56262082	56262111	CAGE_peak_2_at_TMEM165_5end
chr4	56262115	56262140	CAGE_peak_1_at_TMEM165_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr4	GH04I055409	55409094	55410044	0.87	[{'connected_gene': 'CLOCK', 'score': 11.0}, {'connected_gene': 'GC04P055413', 'score': 0.77}, {'connected_gene': 'TMEM165', 'score': 0.39}, {'connected_gene': 'GC04P055398', 'score': 0.39}]
chr4	GH04I055447	55447201	55447400	0.2	[{'connected_gene': 'CLOCK', 'score': 10.74}, {'connected_gene': 'NMU', 'score': 9.98}, {'connected_gene': 'TMEM165', 'score': 9.24}, {'connected_gene': 'PIR52615', 'score': 0.37}, {'connected_gene': 'GC04M055433', 'score': 0.37}, {'connected_gene': 'ENSG00000238585', 'score': 0.23}, {'connected_gene': 'GC04M055502', 'score': 0.23}]
chr4	GH04I055543	55543989	55548764	2.06	[{'connected_gene': 'CLOCK', 'score': 559.76}, {'connected_gene': 'ENSG00000272969', 'score': 558.14}, {'connected_gene': 'RN7SKP30', 'score': 46.4}, {'connected_gene': 'TMEM165', 'score': 28.16}, {'connected_gene': 'CEP135', 'score': 14.64}, {'connected_gene': 'AASDH', 'score': 13.03}, {'connected_gene': 'SRP72', 'score': 12.42}, {'connected_gene': 'NMU', 'score': 10.55}, {'connected_gene': 'SRD5A3', 'score': 7.48}]
chr4	GH04I055368	55368747	55374908	0.2	[{'connected_gene': 'SRD5A3', 'score': 22.28}, {'connected_gene': 'CLOCK', 'score': 19.67}, {'connected_gene': 'TMEM165', 'score': 9.95}, {'connected_gene': 'ENSG00000272969', 'score': 8.57}, {'connected_gene': 'SRD5A3-AS1', 'score': 4.8}, {'connected_gene': 'LOC105377659', 'score': 0.44}, {'connected_gene': 'PIR32131', 'score': 0.37}]
chr4	GH04I055345	55345601	55348230	2.21	[{'connected_gene': 'SRD5A3', 'score': 569.65}, {'connected_gene': 'TMEM165', 'score': 9.28}, {'connected_gene': 'FCF1P8', 'score': 0.44}]
chr4	GH04I055348	55348281	55348850	0.43	[{'connected_gene': 'TMEM165', 'score': 14.71}, {'connected_gene': 'CLOCK', 'score': 10.18}, {'connected_gene': 'SRD5A3', 'score': 0.77}, {'connected_gene': 'FCF1P8', 'score': 0.77}]
chr4	GH04I055442	55442213	55443226	0.2	[{'connected_gene': 'TMEM165', 'score': 28.74}, {'connected_gene': 'PIR52615', 'score': 0.39}, {'connected_gene': 'GC04M055433', 'score': 0.39}, {'connected_gene': 'ENSG00000238585', 'score': 0.22}, {'connected_gene': 'GC04M055502', 'score': 0.22}, {'connected_gene': 'CLOCK', 'score': 0.15}]
chr4	GH04I055553	55553001	55554200	0.69	[{'connected_gene': 'TMEM165', 'score': 28.16}, {'connected_gene': 'NMU', 'score': 10.07}, {'connected_gene': 'CLOCK', 'score': 9.41}, {'connected_gene': 'PDCL2', 'score': 0.28}]
chr4	GH04I055548	55548897	55551176	0.74	[{'connected_gene': 'TMEM165', 'score': 27.82}, {'connected_gene': 'NMU', 'score': 20.46}, {'connected_gene': 'CLOCK', 'score': 9.77}, {'connected_gene': 'ENSG00000272969', 'score': 8.08}, {'connected_gene': 'SRD5A3-AS1', 'score': 7.54}, {'connected_gene': 'PDCL2', 'score': 0.26}]
chr4	GH04I055434	55434594	55435954	0.57	[{'connected_gene': 'TMEM165', 'score': 28.83}, {'connected_gene': 'NMU', 'score': 9.98}, {'connected_gene': 'CLOCK', 'score': 9.25}, {'connected_gene': 'PIR52615', 'score': 0.77}, {'connected_gene': 'GC04M055433', 'score': 0.77}, {'connected_gene': 'ENSG00000238585', 'score': 0.2}, {'connected_gene': 'GC04M055502', 'score': 0.2}]
chr4	GH04I055381	55381107	55382343	0.49	[{'connected_gene': 'TMEM165', 'score': 17.0}, {'connected_gene': 'NMU', 'score': 9.08}, {'connected_gene': 'LOC105377659', 'score': 0.77}, {'connected_gene': 'ENSG00000273257', 'score': 0.44}, {'connected_gene': 'SRD5A3-AS1', 'score': 0.39}]
chr4	GH04I055364	55364221	55365578	0.4	[{'connected_gene': 'TMEM165', 'score': 30.97}, {'connected_gene': 'ENSG00000273257', 'score': 5.09}, {'connected_gene': 'LOC105377659', 'score': 0.39}, {'connected_gene': 'PIR32131', 'score': 0.39}, {'connected_gene': 'SRD5A3', 'score': 0.37}, {'connected_gene': 'SRD5A3-AS1', 'score': 0.29}]
chr4	GH04I055394	55394962	55399618	2.27	[{'connected_gene': 'TMEM165', 'score': 567.86}, {'connected_gene': 'GC04P055398', 'score': 550.77}, {'connected_gene': 'SRD5A3-AS1', 'score': 550.77}, {'connected_gene': 'CEP135', 'score': 20.49}, {'connected_gene': 'RN7SKP30', 'score': 16.57}, {'connected_gene': 'CLOCK', 'score': 15.14}, {'connected_gene': 'AASDH', 'score': 12.28}, {'connected_gene': 'SRD5A3', 'score': 11.84}, {'connected_gene': 'NMU', 'score': 9.93}, {'connected_gene': 'ENSG00000272969', 'score': 7.53}]
chr4	GH04I055356	55356464	55357774	0.69	[{'connected_gene': 'TMEM165', 'score': 16.31}, {'connected_gene': 'SRD5A3-AS1', 'score': 12.96}, {'connected_gene': 'PIR32131', 'score': 0.77}, {'connected_gene': 'SRD5A3', 'score': 0.39}, {'connected_gene': 'LOC105377659', 'score': 0.34}]
chr4	GH04I055336	55336694	55336843	0.56	[{'connected_gene': 'TMEM165', 'score': 9.84}, {'connected_gene': 'SRD5A3-AS1', 'score': 5.25}, {'connected_gene': 'SRD5A3', 'score': 0.44}, {'connected_gene': 'LRRC34P2', 'score': 0.34}]
chr4	GH04I055357	55357974	55360002	1.17	[{'connected_gene': 'TMEM165', 'score': 16.01}, {'connected_gene': 'SRD5A3-AS1', 'score': 12.96}, {'connected_gene': 'NMU', 'score': 7.7}, {'connected_gene': 'CLOCK', 'score': 4.42}, {'connected_gene': 'PIR32131', 'score': 0.44}, {'connected_gene': 'SRD5A3', 'score': 0.39}, {'connected_gene': 'LOC105377659', 'score': 0.37}]
chr4	GH04I055611	55611848	55612768	0.46	[{'connected_gene': 'NMU', 'score': 28.72}, {'connected_gene': 'TMEM165', 'score': 18.67}, {'connected_gene': 'SRD5A3', 'score': 5.41}, {'connected_gene': 'PDCL2', 'score': 0.34}]
chr4	GH04I055608	55608386	55611615	0.31	[{'connected_gene': 'NMU', 'score': 28.71}, {'connected_gene': 'TMEM165', 'score': 25.17}, {'connected_gene': 'KDR', 'score': 9.42}, {'connected_gene': 'SRD5A3', 'score': 5.69}, {'connected_gene': 'PDCL2', 'score': 0.37}]
chr4	GH04I055421	55421419	55422664	0.46	[{'connected_gene': 'NMU', 'score': 9.97}, {'connected_gene': 'TMEM165', 'score': 9.43}, {'connected_gene': 'RN7SKP30', 'score': 8.47}, {'connected_gene': 'PIR45008', 'score': 0.44}, {'connected_gene': 'ENSG00000239040', 'score': 0.44}]
chr4	GH04I055637	55637054	55638412	0.8	[{'connected_gene': 'NMU', 'score': 570.47}, {'connected_gene': 'TMEM165', 'score': 5.62}, {'connected_gene': 'LOC105377660', 'score': 0.37}]
chr4	GH04I055420	55420174	55420961	0.2	[{'connected_gene': 'NMU', 'score': 9.18}, {'connected_gene': 'ENSG00000272969', 'score': 5.04}, {'connected_gene': 'SRD5A3-AS1', 'score': 4.7}, {'connected_gene': 'PIR45008', 'score': 0.44}, {'connected_gene': 'ENSG00000239040', 'score': 0.44}, {'connected_gene': 'TMEM165', 'score': 0.34}]
chr4	GH04I055436	55436932	55439699	1.04	[{'connected_gene': 'RN7SKP30', 'score': 34.99}, {'connected_gene': 'TMEM165', 'score': 28.8}, {'connected_gene': 'CLOCK', 'score': 19.85}, {'connected_gene': 'SRD5A3-AS1', 'score': 12.26}, {'connected_gene': 'PIR52615', 'score': 0.44}, {'connected_gene': 'GC04M055433', 'score': 0.44}, {'connected_gene': 'ENSG00000238585', 'score': 0.21}, {'connected_gene': 'GC04M055502', 'score': 0.21}]
chr4	GH04I055445	55445301	55447019	0.38	[{'connected_gene': 'RN7SKP30', 'score': 30.67}, {'connected_gene': 'TMEM165', 'score': 29.09}, {'connected_gene': 'CLOCK', 'score': 19.9}, {'connected_gene': 'PIR52615', 'score': 0.39}, {'connected_gene': 'GC04M055433', 'score': 0.39}, {'connected_gene': 'ENSG00000238585', 'score': 0.22}, {'connected_gene': 'GC04M055502', 'score': 0.22}]
chr4	GH04I055378	55378649	55379823	0.66	[{'connected_gene': 'LOC105377659', 'score': 550.77}, {'connected_gene': 'TMEM165', 'score': 10.33}, {'connected_gene': 'NMU', 'score': 9.08}, {'connected_gene': 'CLOCK', 'score': 8.15}, {'connected_gene': 'ENSG00000273257', 'score': 0.44}, {'connected_gene': 'SRD5A3-AS1', 'score': 0.37}]
chr4	GH04I055311	55311855	55312119	0.92	[{'connected_gene': 'LRRC34P2', 'score': 550.77}, {'connected_gene': 'KDR', 'score': 9.65}, {'connected_gene': 'TMEM165', 'score': 2.2}, {'connected_gene': 'SRD5A3', 'score': 1.59}, {'connected_gene': 'RNU6-746P', 'score': 0.37}]
chr4	GH04I055386	55386158	55388322	1.16	[{'connected_gene': 'ENSG00000273257', 'score': 550.77}, {'connected_gene': 'TMEM165', 'score': 33.63}, {'connected_gene': 'ENSG00000272969', 'score': 9.31}, {'connected_gene': 'NMU', 'score': 9.08}, {'connected_gene': 'SRD5A3-AS1', 'score': 4.89}, {'connected_gene': 'LOC105377659', 'score': 0.44}]