PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000354662	[[16701306, 16704261], [16713346, 16713472], [16753588, 16753802], [16760869, 16761024]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000441439	[[16701353, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16760869, 16761069]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000447609	[[16701354, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16759683, 16759734]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000320122	[[16701357, 16704261], [16713346, 16713472], [16753588, 16753802], [16757798, 16758313]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000396205	[[16701357, 16704261], [16713346, 16713472], [16753534, 16753802], [16758999, 16759066], [16760869, 16761038]]	[[16753584, 16753794]]
ENST00000261169	[[16701358, 16704261], [16713346, 16713472], [16753588, 16753802], [16757798, 16758081]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753802], [16757798, 16757823]]
ENST00000453727	[[16702308, 16704261], [16713346, 16713472], [16753647, 16753802], [16758999, 16759066], [16759272, 16759374]]	[[16713436, 16713472], [16753647, 16753794]]
ENST00000540848	[[16703132, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16763422, 16763460]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000541589	[[16703135, 16704261], [16713346, 16713472], [16753647, 16753802], [16760869, 16760961]]	[[16713436, 16713472], [16753647, 16753794]]
ENST00000535535	[[16703316, 16704261], [16713346, 16713472], [16753588, 16753802], [16758701, 16758904]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000537304	[[16703382, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759465]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000541764	[[16703743, 16704261], [16713346, 16713472], [16747070, 16747268], [16751725, 16751901], [16753588, 16753802], [16758999, 16759066], [16759750, 16759940]]	[[16751828, 16751901], [16753588, 16753794]]
ENST00000541295	[[16703757, 16704261], [16713346, 16713472], [16753588, 16753802], [16758701, 16758840]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753802], [16758701, 16758747]]
ENST00000534946	[[16703808, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16762667, 16762823]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000424192	[[16703901, 16704261], [16713346, 16713472], [16747070, 16747195], [16753588, 16753802], [16758999, 16759066], [16762667, 16762758]]	[[16747188, 16747195], [16753588, 16753794]]
ENST00000540445	[[16703978, 16704261], [16713346, 16713472], [16747070, 16747195], [16753647, 16753802], [16758999, 16759066], [16759934, 16760084]]	[[16704155, 16704261], [16713346, 16713472], [16747070, 16747195], [16753647, 16753794]]
ENST00000541846	[[16704115, 16704261], [16713346, 16713472], [16753588, 16753802], [16763441, 16763528]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000536172	[[16704161, 16704261], [16713346, 16713472], [16753647, 16753802], [16758999, 16759066], [16759980, 16760119]]	[[16713436, 16713472], [16753647, 16753794]]
ENST00000544754	[[16704165, 16704261], [16713346, 16713472], [16753534, 16753802], [16760869, 16760934]]	[[16753584, 16753794]]
ENST00000539534	[[16704237, 16704261], [16713346, 16713472], [16753588, 16753802], [16754951, 16755130]]	[[16704237, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000546281	[[16704237, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16760224, 16760289]]	[[16704237, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000537757	[[16704237, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16760238, 16760323]]	[[16704237, 16704261], [16713346, 16713472], [16753588, 16753794]]
ENST00000539232	[[16704251, 16704261], [16713346, 16713472], [16753647, 16753802], [16758558, 16758847]]	[[16713436, 16713472], [16753647, 16753794]]
ENST00000546279	[[16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16761477, 16761660]]	[[16713346, 16713472], [16753588, 16753794]]
ENST00000538051	[[16713386, 16713472], [16753588, 16753802], [16760869, 16761148]]	[[16713386, 16713472], [16753588, 16753794]]
ENST00000536509	[[16713408, 16713472], [16753647, 16753802], [16758999, 16759066], [16760594, 16760858]]	None
ENST00000545436	[[16713414, 16713472], [16753588, 16753802], [16757525, 16757783]]	[[16713414, 16713472], [16753588, 16753794]]
ENST00000540590	[[16713425, 16713472], [16753588, 16753802], [16762667, 16762971]]	[[16713425, 16713472], [16753588, 16753794]]
ENST00000332914	[[16713439, 16713472], [16753647, 16753802], [16762667, 16763028]]	None
ENST00000537568	[[16747185, 16747268], [16753647, 16753802], [16762667, 16763023]]	None
ENST00000543721	[[16750549, 16753802], [16758999, 16759066], [16759750, 16760056]]	None
ENST00000544276	[[16751808, 16751901], [16753588, 16753802], [16760869, 16761022]]	None
ENST00000439600	[[16752950, 16753802], [16757798, 16757990]]	None
ENST00000538020	[[16753619, 16753802], [16754788, 16755227]]	[[16753619, 16753794]]
NM_001243611	[[16701305, 16704261], [16713346, 16713472], [16753588, 16753802], [16757798, 16758313]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753802], [16757798, 16757823]]
NM_001243612	[[16701305, 16704261], [16713346, 16713472], [16753588, 16753802], [16758701, 16758904]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753802], [16758701, 16758747]]
NM_018640	[[16701305, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759536]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
NM_001243610	[[16701305, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16759683, 16759734]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
NM_001243613	[[16701305, 16704261], [16713346, 16713472], [16747070, 16747195], [16753647, 16753802], [16758999, 16759066], [16759934, 16760084]]	[[16704155, 16704261], [16713346, 16713472], [16747070, 16747195], [16753647, 16753794]]
NR_045012	[[16701305, 16704261], [16713346, 16713472], [16747070, 16747195], [16753588, 16753802], [16758999, 16759066], [16760869, 16761148]]	None
NM_001243609	[[16701305, 16704261], [16713346, 16713472], [16753588, 16753802], [16758999, 16759066], [16760869, 16761148]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
NR_045013	[[16701305, 16704261], [16713346, 16713472], [16753647, 16753802], [16758999, 16759066], [16760869, 16761148]]	None
NM_001001395	[[16701305, 16704261], [16713346, 16713472], [16753588, 16753802], [16760869, 16761148]]	[[16704155, 16704261], [16713346, 16713472], [16753588, 16753794]]
NR_045014	[[16701305, 16704261], [16713346, 16713472], [16753647, 16753802], [16760869, 16761148]]	None

Promoter

Chrom	Start	End	Description
chr12	16753639	16753656	CAGE_peak_26_at_LMO3_5end
chr12	16757951	16757970	CAGE_peak_4_at_LMO3_5end
chr12	16757977	16757995	CAGE_peak_12_at_LMO3_5end
chr12	16758059	16758088	CAGE_peak_10_at_LMO3_5end
chr12	16758109	16758118	CAGE_peak_37_at_LMO3_5end
chr12	16758304	16758322	CAGE_peak_27_at_LMO3_5end
chr12	16758835	16758863	CAGE_peak_16_at_LMO3_5end
chr12	16758873	16758892	CAGE_peak_17_at_LMO3_5end
chr12	16759039	16759089	CAGE_peak_7_at_LMO3_5end
chr12	16759090	16759101	CAGE_peak_18_at_LMO3_5end
chr12	16759380	16759391	CAGE_peak_11_at_LMO3_5end
chr12	16759412	16759437	CAGE_peak_1_at_LMO3_5end
chr12	16759440	16759461	CAGE_peak_3_at_LMO3_5end
chr12	16759524	16759549	CAGE_peak_5_at_LMO3_5end
chr12	16759574	16759585	CAGE_peak_8_at_LMO3_5end
chr12	16759711	16759718	CAGE_peak_21_at_LMO3_5end
chr12	16760004	16760017	CAGE_peak_19_at_LMO3_5end
chr12	16760021	16760099	CAGE_peak_6_at_LMO3_5end
chr12	16760134	16760146	CAGE_peak_20_at_LMO3_5end
chr12	16760195	16760207	CAGE_peak_13_at_LMO3_5end
chr12	16760950	16760966	CAGE_peak_23_at_LMO3_5end
chr12	16761007	16761080	CAGE_peak_2_at_LMO3_5end
chr12	16761117	16761128	CAGE_peak_25_at_LMO3_5end
chr12	16762802	16762821	CAGE_peak_22_at_LMO3_5end
chr12	16763014	16763035	CAGE_peak_9_at_LMO3_5end
chr12	16763054	16763073	CAGE_peak_14_at_LMO3_5end
chr12	16763102	16763116	CAGE_peak_15_at_LMO3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr12	GH12I016600	16600883	16600942	0.7	[{'connected_gene': 'LMO3', 'score': 550.44}, {'connected_gene': 'GC12P016604', 'score': 0.77}, {'connected_gene': 'GC12M016551', 'score': 0.31}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016817	16817120	16817322	0.22	[{'connected_gene': 'LMO3', 'score': 1.67}, {'connected_gene': 'GC12P016793', 'score': 0.34}, {'connected_gene': 'LOC105369676', 'score': 0.34}, {'connected_gene': 'GC12M016744', 'score': 0.31}, {'connected_gene': 'LOC105369677', 'score': 0.09}]
chr12	GH12I016664	16664942	16665052	0.22	[{'connected_gene': 'LMO3', 'score': 3.77}, {'connected_gene': 'ENSG00000283240', 'score': 0.77}, {'connected_gene': 'GC12P016655', 'score': 0.44}, {'connected_gene': 'ENSG00000255871', 'score': 0.31}]
chr12	GH12I016610	16610169	16610590	0.71	[{'connected_gene': 'LMO3', 'score': 550.77}, {'connected_gene': 'GC12P016610', 'score': 550.77}, {'connected_gene': 'GC12P016607', 'score': 0.77}]
chr12	GH12I016611	16610725	16611119	0.83	[{'connected_gene': 'LMO3', 'score': 550.77}, {'connected_gene': 'GC12P016610', 'score': 550.77}, {'connected_gene': 'GC12P016607', 'score': 0.77}, {'connected_gene': 'GC12P016622', 'score': 0.39}]
chr12	GH12I016612	16612241	16613343	0.2	[{'connected_gene': 'LMO3', 'score': 0.77}, {'connected_gene': 'GC12P016622', 'score': 0.44}]
chr12	GH12I016367	16367481	16370546	0.2	[{'connected_gene': 'MGST1', 'score': 11.43}, {'connected_gene': 'ENSG00000256564', 'score': 8.71}, {'connected_gene': 'LMO3', 'score': 5.3}, {'connected_gene': 'GC12P016380', 'score': 0.39}]
chr12	GH12I016588	16588570	16589461	0.2	[{'connected_gene': 'GC12M016551', 'score': 0.37}, {'connected_gene': 'GC12P016604', 'score': 0.37}, {'connected_gene': 'LMO3', 'score': 0.34}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016603	16603558	16603828	0.71	[{'connected_gene': 'GC12P016604', 'score': 550.77}, {'connected_gene': 'LMO3', 'score': 0.44}, {'connected_gene': 'GC12M016551', 'score': 0.29}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016608	16608105	16608164	0.7	[{'connected_gene': 'GC12P016607', 'score': 550.77}, {'connected_gene': 'LMO3', 'score': 550.77}, {'connected_gene': 'GC12P016610', 'score': 0.77}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016609	16608761	16609281	0.71	[{'connected_gene': 'GC12P016607', 'score': 550.77}, {'connected_gene': 'LMO3', 'score': 550.77}, {'connected_gene': 'GC12P016610', 'score': 550.77}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016573	16573443	16574488	0.97	[{'connected_gene': 'GC12M016551', 'score': 0.77}, {'connected_gene': 'ENSG00000256564', 'score': 0.44}, {'connected_gene': 'GC12P016604', 'score': 0.29}, {'connected_gene': 'LMO3', 'score': 0.28}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016587	16587523	16587772	0.71	[{'connected_gene': 'GC12M016551', 'score': 0.37}, {'connected_gene': 'GC12P016604', 'score': 0.37}, {'connected_gene': 'LMO3', 'score': 0.34}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016613	16608224	16608570	0.78	[{'connected_gene': 'GC12P016607', 'score': 550.77}, {'connected_gene': 'GC12P016610', 'score': 550.77}, {'connected_gene': 'LMO3', 'score': 0.77}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016605	16604801	16607296	1.82	[{'connected_gene': 'GC12P016607', 'score': 550.77}, {'connected_gene': 'GC12P016604', 'score': 550.77}, {'connected_gene': 'LMO3', 'score': 550.77}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016586	16586071	16586996	0.4	[{'connected_gene': 'GC12M016551', 'score': 0.39}, {'connected_gene': 'GC12P016604', 'score': 0.37}, {'connected_gene': 'LMO3', 'score': 0.34}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016604	16604247	16604588	1.06	[{'connected_gene': 'GC12P016604', 'score': 550.77}, {'connected_gene': 'GC12P016607', 'score': 0.77}, {'connected_gene': 'LMO3', 'score': 0.44}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016583	16583121	16585019	0.51	[{'connected_gene': 'GC12M016551', 'score': 0.39}, {'connected_gene': 'GC12P016604', 'score': 0.34}, {'connected_gene': 'LMO3', 'score': 0.31}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016562	16562381	16563426	0.98	[{'connected_gene': 'ENSG00000256564', 'score': 0.77}, {'connected_gene': 'GC12M016551', 'score': 0.44}, {'connected_gene': 'LMO3', 'score': 0.25}, {'connected_gene': 'GOT2P4', 'score': 0.25}, {'connected_gene': 'MGST1', 'score': 0.08}]
chr12	GH12I016614	16609307	16609456	0.51	[{'connected_gene': 'GC12P016607', 'score': 550.77}, {'connected_gene': 'LMO3', 'score': 550.77}, {'connected_gene': 'GC12P016610', 'score': 550.77}]
chr12	GH12I016568	16568029	16569396	0.56	[{'connected_gene': 'ENSG00000256564', 'score': 550.77}, {'connected_gene': 'DERA', 'score': 4.17}, {'connected_gene': 'GC12M016551', 'score': 0.77}, {'connected_gene': 'LMO3', 'score': 0.26}, {'connected_gene': 'MGST1', 'score': 0.07}]
chr12	GH12I016550	16550792	16551001	0.4	[{'connected_gene': 'ENSG00000256564', 'score': 0.37}, {'connected_gene': 'GOT2P4', 'score': 0.28}, {'connected_gene': 'GC12P016503', 'score': 0.25}, {'connected_gene': 'LMO3', 'score': 0.22}, {'connected_gene': 'MGST1', 'score': 0.08}]