PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000426540	[[44596684, 44596973], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44612986]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44612867]]
ENST00000431636	[[44596684, 44596973], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624937]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624483]]
ENST00000341840	[[44596694, 44597010], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624975]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624483]]
ENST00000273320	[[44596699, 44597010], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44613650]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44612867]]
ENST00000418719	[[44596720, 44596973], [44598421, 44598962], [44606978, 44607147], [44609798, 44609925], [44611416, 44611620]]	[[44598539, 44598962], [44606978, 44607147], [44609798, 44609815]]
ENST00000447279	[[44596935, 44596973], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611416, 44612157], [44624463, 44624798]]	[[44607005, 44607147], [44609403, 44609495], [44609798, 44609925], [44611416, 44612157], [44624463, 44624483]]
ENST00000496563	[[44598848, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609969]]	None
NM_001288590	[[44596666, 44596973], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44613650]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44612867]]
NM_018651	[[44596666, 44597010], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44613650]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611413, 44612867]]
NM_001288592	[[44596666, 44596973], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44611416, 44612157], [44624463, 44624956]]	[[44607005, 44607147], [44609403, 44609495], [44609798, 44609925], [44611416, 44612157], [44624463, 44624483]]
NM_001288591	[[44596666, 44596973], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624956]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624483]]
NM_025169	[[44596666, 44597010], [44598421, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624956]]	[[44598539, 44598962], [44606978, 44607147], [44609403, 44609495], [44609798, 44609925], [44624463, 44624483]]

Promoter

Chrom	Start	End	Description
chr3	44596664	44596672	CAGE_peak_2_at_ZNF167_5end
chr3	44596679	44596726	CAGE_peak_1_at_ZNF167_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I044611	44611083	44611373	0.24	[{'connected_gene': 'KIAA1143', 'score': 13.67}, {'connected_gene': 'ZNF197', 'score': 3.77}, {'connected_gene': 'ZNF660', 'score': 3.1}, {'connected_gene': 'ZKSCAN7', 'score': 2.34}, {'connected_gene': 'ZNF445', 'score': 1.85}, {'connected_gene': 'ZNF502', 'score': 1.81}, {'connected_gene': 'ZNF501', 'score': 1.64}, {'connected_gene': 'PIR39553', 'score': 0.39}, {'connected_gene': 'ENSG00000236869', 'score': 0.19}]
chr3	GH03I044558	44558259	44558636	0.33	[{'connected_gene': 'ZKSCAN7', 'score': 2.21}, {'connected_gene': 'PIR39053', 'score': 0.77}, {'connected_gene': 'PIRC13', 'score': 0.77}, {'connected_gene': 'ENSG00000236869', 'score': 0.13}]
chr3	GH03I044233	44233079	44238725	1.17	[{'connected_gene': 'ZNF660', 'score': 39.63}, {'connected_gene': 'ZNF502', 'score': 20.16}, {'connected_gene': 'ZNF197', 'score': 19.44}, {'connected_gene': 'ZKSCAN7', 'score': 12.54}, {'connected_gene': 'ZNF445', 'score': 11.38}, {'connected_gene': 'ZNF852', 'score': 10.59}, {'connected_gene': 'RNU6-367P', 'score': 9.97}, {'connected_gene': 'ZNF35', 'score': 9.79}, {'connected_gene': 'SNRK-AS1', 'score': 9.72}, {'connected_gene': 'MIR138-1', 'score': 9.49}, {'connected_gene': 'TCAIM', 'score': 7.76}, {'connected_gene': 'ENSG00000271941', 'score': 5.94}, {'connected_gene': 'TOPAZ1', 'score': 0.44}, {'connected_gene': 'PIR53341', 'score': 0.13}]
chr3	GH03I044882	44882710	44887950	1.5	[{'connected_gene': 'ZNF660', 'score': 28.46}, {'connected_gene': 'ZKSCAN7', 'score': 10.2}, {'connected_gene': 'KIAA1143', 'score': 8.7}, {'connected_gene': 'TGM4', 'score': 6.76}, {'connected_gene': 'ZNF501', 'score': 4.57}, {'connected_gene': 'ZNF197', 'score': 4.35}, {'connected_gene': 'ENSG00000235845', 'score': 0.39}]
chr3	GH03I044613	44613081	44613382	0.24	[{'connected_gene': 'ZNF660', 'score': 3.95}, {'connected_gene': 'ZNF445', 'score': 3.39}, {'connected_gene': 'ZKSCAN7', 'score': 2.85}, {'connected_gene': 'ZNF197', 'score': 2.56}, {'connected_gene': 'ZNF501', 'score': 1.76}, {'connected_gene': 'PIR39553', 'score': 0.44}, {'connected_gene': 'ENSG00000236869', 'score': 0.19}]
chr3	GH03I044341	44341787	44343000	0.58	[{'connected_gene': 'ZNF660', 'score': 42.5}, {'connected_gene': 'ZNF852', 'score': 10.52}, {'connected_gene': 'ZNF445', 'score': 10.11}, {'connected_gene': 'ZKSCAN7', 'score': 9.36}, {'connected_gene': 'ZNF197', 'score': 8.43}, {'connected_gene': 'TCAIM', 'score': 0.77}, {'connected_gene': 'LOC105377055', 'score': 0.77}, {'connected_gene': 'LINC01988', 'score': 0.18}]
chr3	GH03I045177	45177990	45179030	0.93	[{'connected_gene': 'ZNF660', 'score': 18.84}, {'connected_gene': 'ZNF197', 'score': 15.48}, {'connected_gene': 'ZNF502', 'score': 14.09}, {'connected_gene': 'ENSG00000272077', 'score': 13.18}, {'connected_gene': 'SACM1L', 'score': 11.26}, {'connected_gene': 'ZKSCAN7', 'score': 11.11}, {'connected_gene': 'LZTFL1', 'score': 11.09}, {'connected_gene': 'ZNF197-AS1', 'score': 11.01}, {'connected_gene': 'ZNF501', 'score': 11.0}, {'connected_gene': 'CDCP1', 'score': 5.69}, {'connected_gene': 'SLC6A20', 'score': 4.54}, {'connected_gene': 'RPS24P8', 'score': 0.37}, {'connected_gene': 'LOC101928636', 'score': 0.34}]
chr3	GH03I044974	44974043	44977602	2.21	[{'connected_gene': 'EXOSC7', 'score': 566.38}, {'connected_gene': 'ZDHHC3', 'score': 554.91}, {'connected_gene': 'ZNF445', 'score': 16.55}, {'connected_gene': 'RN7SL145P', 'score': 14.75}, {'connected_gene': 'CLEC3B', 'score': 11.34}, {'connected_gene': 'ZNF502', 'score': 11.08}, {'connected_gene': 'ZKSCAN7', 'score': 10.78}, {'connected_gene': 'ZNF852', 'score': 10.5}, {'connected_gene': 'RNU5B-3P', 'score': 9.69}, {'connected_gene': 'KIAA1143', 'score': 9.3}, {'connected_gene': 'ZNF197', 'score': 6.24}]
chr3	GH03I044584	44584128	44585846	1.71	[{'connected_gene': 'ZNF197', 'score': 564.51}, {'connected_gene': 'ZNF660', 'score': 550.44}, {'connected_gene': 'ZNF197-AS1', 'score': 10.93}, {'connected_gene': 'ZKSCAN7', 'score': 10.75}, {'connected_gene': 'ZNF501', 'score': 10.62}, {'connected_gene': 'ZNF35', 'score': 10.23}, {'connected_gene': 'PIR39553', 'score': 0.28}, {'connected_gene': 'ENSG00000236869', 'score': 0.15}]
chr3	GH03I044532	44532929	44533078	0.99	[{'connected_gene': 'ZNF197', 'score': 24.83}, {'connected_gene': 'ZNF852', 'score': 12.13}, {'connected_gene': 'ZKSCAN7', 'score': 11.23}, {'connected_gene': 'ENSG00000235845', 'score': 10.51}, {'connected_gene': 'TGM4', 'score': 10.51}, {'connected_gene': 'ZNF445', 'score': 10.46}, {'connected_gene': 'ZNF660', 'score': 10.35}, {'connected_gene': 'ZNF501', 'score': 10.05}, {'connected_gene': 'CLEC3B', 'score': 9.82}, {'connected_gene': 'RNU5B-3P', 'score': 9.81}, {'connected_gene': 'ZNF35', 'score': 9.64}, {'connected_gene': 'KIAA1143', 'score': 6.39}, {'connected_gene': 'LOC100419748', 'score': 0.77}]
chr3	GH03I044602	44602478	44602731	0.22	[{'connected_gene': 'ZNF197-AS1', 'score': 11.74}, {'connected_gene': 'ZNF445', 'score': 11.57}, {'connected_gene': 'ZKSCAN7', 'score': 10.52}, {'connected_gene': 'ZNF501', 'score': 9.77}, {'connected_gene': 'ZNF660', 'score': 2.28}, {'connected_gene': 'ZNF35', 'score': 2.14}, {'connected_gene': 'ZNF197', 'score': 1.54}, {'connected_gene': 'PIR39553', 'score': 0.37}, {'connected_gene': 'ENSG00000236869', 'score': 0.18}]
chr3	GH03I044914	44914009	44914158	0.69	[{'connected_gene': 'PIR39185', 'score': 550.77}, {'connected_gene': 'TGM4', 'score': 11.63}, {'connected_gene': 'CLEC3B', 'score': 10.23}, {'connected_gene': 'EXOSC7', 'score': 10.02}, {'connected_gene': 'ZKSCAN7', 'score': 9.73}, {'connected_gene': 'ENSG00000235845', 'score': 0.39}]
chr3	GH03I044554	44554601	44556400	1.75	[{'connected_gene': 'PIR39053', 'score': 550.77}, {'connected_gene': 'ZKSCAN7', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 13.81}, {'connected_gene': 'PIRC13', 'score': 0.44}]
chr3	GH03I044685	44685000	44686200	1.26	[{'connected_gene': 'ENSG00000236869', 'score': 550.77}, {'connected_gene': 'LOC101928592', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 24.18}, {'connected_gene': 'ZNF35', 'score': 21.76}, {'connected_gene': 'KIAA1143', 'score': 15.25}, {'connected_gene': 'ZNF852', 'score': 13.11}, {'connected_gene': 'KIF15', 'score': 11.25}, {'connected_gene': 'ZNF501', 'score': 11.14}, {'connected_gene': 'ZNF660', 'score': 10.61}, {'connected_gene': 'ZNF502', 'score': 10.19}, {'connected_gene': 'ZKSCAN7', 'score': 10.17}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'ZNF445', 'score': 8.93}, {'connected_gene': 'PIR62310', 'score': 0.77}]
chr3	GH03I044682	44682137	44683500	0.2	[{'connected_gene': 'PIR62310', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 15.2}, {'connected_gene': 'ZNF501', 'score': 11.21}, {'connected_gene': 'ZNF660', 'score': 11.08}, {'connected_gene': 'ZNF35', 'score': 11.01}, {'connected_gene': 'ZKSCAN7', 'score': 10.07}, {'connected_gene': 'ENSG00000236869', 'score': 0.77}, {'connected_gene': 'LOC101928592', 'score': 0.77}, {'connected_gene': 'LOC100419752', 'score': 0.44}]
chr3	GH03I044580	44580801	44581400	0.5	[{'connected_gene': 'GC03P044592', 'score': 550.77}, {'connected_gene': 'GC03P044586', 'score': 550.77}, {'connected_gene': 'PIR31475', 'score': 550.77}, {'connected_gene': 'PIR35983', 'score': 550.77}, {'connected_gene': 'GC03P044594', 'score': 550.77}, {'connected_gene': 'GC03P044593', 'score': 550.77}, {'connected_gene': 'PIR40699', 'score': 550.77}, {'connected_gene': 'PIR56267', 'score': 550.77}, {'connected_gene': 'PIR46880', 'score': 550.77}, {'connected_gene': 'PIR58340', 'score': 550.77}, {'connected_gene': 'PIR49343', 'score': 550.77}, {'connected_gene': 'GC03P044591', 'score': 550.77}, {'connected_gene': 'PIR48028', 'score': 550.77}, {'connected_gene': 'PIR36215', 'score': 550.77}, {'connected_gene': 'PIR40120', 'score': 550.77}, {'connected_gene': 'GC03P044583', 'score': 550.77}, {'connected_gene': 'PIR55374', 'score': 550.77}, {'connected_gene': 'GC03P044588', 'score': 550.77}, {'connected_gene': 'GC03M044582', 'score': 550.77}, {'connected_gene': 'GC03P044584', 'score': 550.77}, {'connected_gene': 'PIR31304', 'score': 550.77}, {'connected_gene': 'MPRIPP1', 'score': 550.77}, {'connected_gene': 'PIR32911', 'score': 550.77}, {'connected_gene': 'GC03P044582', 'score': 550.77}, {'connected_gene': 'PIR34851', 'score': 550.77}, {'connected_gene': 'GC03P044580', 'score': 550.77}, {'connected_gene': 'GC03P044598', 'score': 550.77}, {'connected_gene': 'GC03P044581', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 20.33}, {'connected_gene': 'ZNF660', 'score': 0.77}, {'connected_gene': 'PIRC13', 'score': 0.34}, {'connected_gene': 'ZKSCAN7', 'score': 0.31}, {'connected_gene': 'ENSG00000236869', 'score': 0.15}]