PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000529901	[[76060999, 76063838], [76066661, 76070617]]	None
ENST00000260045	[[76060999, 76063838], [76066661, 76066698], [76071999, 76072107], [76076895, 76077016], [76091791, 76091986]]	[[76061907, 76063838], [76066661, 76066698], [76071999, 76072107], [76076895, 76077016], [76091791, 76091880]]
ENST00000528993	[[76063541, 76063838], [76066661, 76066698], [76071999, 76072107], [76075381, 76075476], [76076895, 76077016], [76091791, 76092015]]	[[76075446, 76075476], [76076895, 76077016], [76091791, 76091880]]
ENST00000525277	[[76063668, 76063838], [76066661, 76066698], [76071999, 76072413]]	None
ENST00000531878	[[76063740, 76063838], [76066661, 76066698], [76071999, 76072107], [76075381, 76075476], [76076895, 76077016], [76079609, 76079687]]	None
NR_130898	[[76060999, 76063838], [76066661, 76066698], [76071999, 76072107], [76075381, 76075476], [76076895, 76077016], [76091791, 76092009]]	None
NM_004705	[[76060999, 76063838], [76066661, 76066698], [76071999, 76072107], [76076895, 76077016], [76091791, 76092009]]	[[76061907, 76063838], [76066661, 76066698], [76071999, 76072107], [76076895, 76077016], [76091791, 76091880]]

Promoter

Chrom	Start	End	Description
chr11	76092029	76092038	CAGE_peak_4_at_PRKRIR_5end
chr11	76092097	76092183	CAGE_peak_1_at_PRKRIR_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I075820	75820401	75828153	1.47	[{'connected_gene': 'DGAT2', 'score': 22.77}, {'connected_gene': 'ENSG00000254814', 'score': 12.47}, {'connected_gene': 'MOGAT2', 'score': 10.7}, {'connected_gene': 'THAP12', 'score': 5.44}, {'connected_gene': 'UVRAG', 'score': 3.67}, {'connected_gene': 'ARRB1', 'score': 1.43}, {'connected_gene': 'LOC100506113', 'score': 0.44}, {'connected_gene': 'GC11M075836', 'score': 0.39}, {'connected_gene': 'ENSG00000200256', 'score': 0.39}]
chr11	GH11I076330	76330057	76330206	0.2	[{'connected_gene': 'WNT11', 'score': 11.81}, {'connected_gene': 'LOC105369395', 'score': 0.25}, {'connected_gene': 'THAP12', 'score': 0.23}]
chr11	GH11I076329	76329197	76329346	0.8	[{'connected_gene': 'WNT11', 'score': 11.81}, {'connected_gene': 'LOC105369395', 'score': 0.26}, {'connected_gene': 'THAP12', 'score': 0.23}]
chr11	GH11I075812	75812078	75818322	2.29	[{'connected_gene': 'UVRAG', 'score': 550.77}, {'connected_gene': 'LOC100506113', 'score': 550.77}, {'connected_gene': 'XRRA1', 'score': 14.0}, {'connected_gene': 'THAP12', 'score': 10.64}, {'connected_gene': 'NEU3', 'score': 10.07}, {'connected_gene': 'EMSY', 'score': 9.96}, {'connected_gene': 'DGAT2', 'score': 8.02}, {'connected_gene': 'LOC105369391', 'score': 4.81}]
chr11	GH11I076335	76335957	76336106	0.2	[{'connected_gene': 'THAP12', 'score': 0.26}, {'connected_gene': 'LOC105369395', 'score': 0.23}]
chr11	GH11I076379	76379342	76382989	2.05	[{'connected_gene': 'THAP12', 'score': 555.6}, {'connected_gene': 'GVQW3', 'score': 555.24}, {'connected_gene': 'TSKU', 'score': 14.67}, {'connected_gene': 'ENSG00000261578', 'score': 12.5}, {'connected_gene': 'EMSY', 'score': 11.02}, {'connected_gene': 'ENSG00000255363', 'score': 10.78}, {'connected_gene': 'LOC101928837', 'score': 10.71}, {'connected_gene': 'SNORD15B', 'score': 9.87}, {'connected_gene': 'ENSG00000255135', 'score': 5.62}]
chr11	GH11I076860	76860048	76862590	2.02	[{'connected_gene': 'ACER3', 'score': 565.23}, {'connected_gene': 'EMSY', 'score': 50.01}, {'connected_gene': 'ENSG00000271757', 'score': 23.29}, {'connected_gene': 'RSF1', 'score': 20.4}, {'connected_gene': 'ENSG00000272301', 'score': 19.95}, {'connected_gene': 'GVQW3', 'score': 19.24}, {'connected_gene': 'ENSG00000255135', 'score': 13.48}, {'connected_gene': 'THAP12', 'score': 10.14}, {'connected_gene': 'ENSG00000254988', 'score': 7.24}]
chr11	GH11I076368	76368997	76370196	0.4	[{'connected_gene': 'GVQW3', 'score': 7.26}, {'connected_gene': 'ENSG00000255135', 'score': 5.99}, {'connected_gene': 'WNT11', 'score': 4.79}, {'connected_gene': 'THAP12', 'score': 0.39}, {'connected_gene': 'LOC105369395', 'score': 0.17}]
chr11	GH11I076338	76338201	76340461	0.76	[{'connected_gene': 'GVQW3', 'score': 6.37}, {'connected_gene': 'ENSG00000255135', 'score': 5.73}, {'connected_gene': 'THAP12', 'score': 0.26}, {'connected_gene': 'LOC105369395', 'score': 0.23}]
chr11	GH11I076370	76370696	76372000	1	[{'connected_gene': 'ENSG00000255135', 'score': 22.56}, {'connected_gene': 'EMSY', 'score': 10.47}, {'connected_gene': 'GVQW3', 'score': 8.45}, {'connected_gene': 'THAP12', 'score': 0.44}, {'connected_gene': 'LOC105369395', 'score': 0.17}]
chr11	GH11I076318	76318897	76319046	0.76	[{'connected_gene': 'ENSG00000255421', 'score': 10.48}, {'connected_gene': 'LOC105369395', 'score': 0.29}, {'connected_gene': 'THAP12', 'score': 0.21}]
chr11	GH11I076287	76287286	76289162	0.63	[{'connected_gene': 'ENSG00000254826', 'score': 5.86}, {'connected_gene': 'LOC105369395', 'score': 0.77}, {'connected_gene': 'THAP12', 'score': 0.16}]
chr11	GH11I076046	76046993	76049575	0.82	[{'connected_gene': 'ENSG00000255434', 'score': 11.58}, {'connected_gene': 'LOC105369391', 'score': 10.84}, {'connected_gene': 'ENSG00000255421', 'score': 10.75}, {'connected_gene': 'GVQW3', 'score': 10.72}, {'connected_gene': 'THAP12', 'score': 10.67}, {'connected_gene': 'ENSG00000271757', 'score': 10.07}, {'connected_gene': 'EMSY', 'score': 9.98}, {'connected_gene': 'MAP6', 'score': 9.93}, {'connected_gene': 'ENSG00000272301', 'score': 9.73}, {'connected_gene': 'PIR47539', 'score': 0.28}, {'connected_gene': 'UVRAG', 'score': 0.07}]