Visualization of regulatory element with DNMs in transcripts



Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.

Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000306482 [[22287479, 22287822], [22290402, 22290582], [22292766, 22292874], [22294637, 22294813], [22297183, 22297730]] [[22287630, 22287822], [22290402, 22290582], [22292766, 22292874], [22294637, 22294813], [22297183, 22297211]]
NM_000948 [[22287472, 22287822], [22290402, 22290582], [22292766, 22292874], [22294637, 22294813], [22297183, 22297730]] [[22287630, 22287822], [22290402, 22290582], [22292766, 22292874], [22294637, 22294813], [22297183, 22297211]]
NM_001163558 [[22287472, 22287822], [22290402, 22290582], [22292766, 22292874], [22294637, 22294813], [22297183, 22297308], [22302988, 22303082]] [[22287630, 22287822], [22290402, 22290582], [22292766, 22292874], [22294637, 22294813], [22297183, 22297211]]
Promoter
Chrom Start End Description
chr6 22294671 22294709 CAGE_peak_2_at_PRL_5end
chr6 22294718 22294725 CAGE_peak_11_at_PRL_5end
chr6 22294730 22294743 CAGE_peak_6_at_PRL_5end
chr6 22294755 22294768 CAGE_peak_9_at_PRL_5end
chr6 22294783 22294799 CAGE_peak_5_at_PRL_5end
chr6 22294803 22294830 CAGE_peak_7_at_PRL_5end
chr6 22294835 22294850 CAGE_peak_8_at_PRL_5end
chr6 22294904 22294908 CAGE_peak_14_at_PRL_5end
chr6 22297257 22297272 CAGE_peak_1_at_PRL_5end
chr6 22303026 22303033 CAGE_peak_10_at_PRL_5end
chr6 22303034 22303053 CAGE_peak_4_at_PRL_5end
chr6 22303057 22303072 CAGE_peak_3_at_PRL_5end

Enhancer
Chrom Start End Genehancer ID Score Attributes
chr6 GH06I022297 22297026 22297085 0.5 [{'connected_gene': 'PRL', 'score': 550.44}, {'connected_gene': 'ENSG00000261568', 'score': 0.18}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022271 22271001 22271400 0.54 [{'connected_gene': 'PRL', 'score': 0.29}, {'connected_gene': 'ENSG00000261568', 'score': 0.23}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022320 22320892 22321041 0.49 [{'connected_gene': 'PRL', 'score': 0.37}, {'connected_gene': 'GC06P022347', 'score': 0.31}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022249 22249811 22252109 0.59 [{'connected_gene': 'ENSG00000261568', 'score': 0.29}, {'connected_gene': 'PRL', 'score': 0.23}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022248 22248243 22249667 0.84 [{'connected_gene': 'ENSG00000261568', 'score': 0.31}, {'connected_gene': 'PRL', 'score': 0.23}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022222 22222407 22223301 0.59 [{'connected_gene': 'ENSG00000261568', 'score': 0.77}, {'connected_gene': 'PRL', 'score': 0.18}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022221 22221020 22222318 0.51 [{'connected_gene': 'ENSG00000261568', 'score': 550.77}, {'connected_gene': 'PRL', 'score': 0.18}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022250 22248001 22248200 0.43 [{'connected_gene': 'ENSG00000261568', 'score': 0.31}, {'connected_gene': 'PRL', 'score': 0.23}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022236 22236172 22237785 0.66 [{'connected_gene': 'ENSG00000261568', 'score': 0.37}, {'connected_gene': 'PRL', 'score': 0.2}, {'connected_gene': 'CASC15', 'score': 0.03}]
chr6 GH06I022231 22231752 22231901 0.2 [{'connected_gene': 'ENSG00000261568', 'score': 0.39}, {'connected_gene': 'PRL', 'score': 0.19}, {'connected_gene': 'CASC15', 'score': 0.03}]