PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr15	52944231	52944268	CAGE_peak_6_at_FAM214A_5end
chr15	52970928	52970960	CAGE_peak_1_at_FAM214A_5end
chr15	52971111	52971134	CAGE_peak_2_at_FAM214A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr15	GH15I052623	52623556	52628590	0.49	[{'connected_gene': 'FAM214A', 'score': 11.11}, {'connected_gene': 'ARPP19', 'score': 9.11}, {'connected_gene': 'ENSG00000259935', 'score': 5.15}, {'connected_gene': 'ENSG00000260618', 'score': 0.25}]
chr15	GH15I052651	52651109	52654653	2.11	[{'connected_gene': 'FAM214A', 'score': 561.8}, {'connected_gene': 'GNB5', 'score': 9.85}, {'connected_gene': 'MIR1266', 'score': 9.81}, {'connected_gene': 'ENSG00000259935', 'score': 8.03}, {'connected_gene': 'LOC105370821', 'score': 0.31}]
chr15	GH15I052676	52676454	52684562	2.51	[{'connected_gene': 'FAM214A', 'score': 567.18}, {'connected_gene': 'LOC105370821', 'score': 550.77}, {'connected_gene': 'ENSG00000260618', 'score': 16.22}, {'connected_gene': 'ENSG00000259935', 'score': 15.45}, {'connected_gene': 'ENSG00000259712', 'score': 10.59}, {'connected_gene': 'GNB5', 'score': 9.73}]
chr15	GH15I052708	52708642	52710623	1.03	[{'connected_gene': 'FAM214A', 'score': 550.77}, {'connected_gene': 'LOC105370821', 'score': 0.29}]
chr15	GH15I052615	52615727	52617601	0.38	[{'connected_gene': 'FAM214A', 'score': 11.09}, {'connected_gene': 'ENSG00000259935', 'score': 0.29}, {'connected_gene': 'ENSG00000260618', 'score': 0.28}]
chr15	GH15I052718	52718024	52718173	0.49	[{'connected_gene': 'FAM214A', 'score': 0.44}, {'connected_gene': 'GC15P052725', 'score': 0.44}]
chr15	GH15I052018	52018089	52023646	2.32	[{'connected_gene': 'MAPK6', 'score': 555.88}, {'connected_gene': 'ENSG00000259438', 'score': 550.77}, {'connected_gene': 'ENSG00000259935', 'score': 22.89}, {'connected_gene': 'ENSG00000259712', 'score': 20.81}, {'connected_gene': 'ENSG00000260618', 'score': 16.1}, {'connected_gene': 'BCL2L10', 'score': 12.47}, {'connected_gene': 'LYSMD2', 'score': 12.42}, {'connected_gene': 'FAM214A', 'score': 11.91}, {'connected_gene': 'DMXL2', 'score': 4.84}, {'connected_gene': 'ENSG00000259398', 'score': 0.39}, {'connected_gene': 'GC15P052002', 'score': 0.37}]
chr15	GH15I052231	52231236	52236468	1.38	[{'connected_gene': 'MYO5C', 'score': 22.07}, {'connected_gene': 'GNB5', 'score': 16.33}, {'connected_gene': 'MIR1266', 'score': 11.7}, {'connected_gene': 'TMOD3', 'score': 6.36}, {'connected_gene': 'FAM214A', 'score': 2.15}, {'connected_gene': 'LOC105370820', 'score': 0.44}, {'connected_gene': 'GC15M057316', 'score': 0.26}, {'connected_gene': 'GC15M056837', 'score': 0.26}]
chr15	GH15I051758	51758284	51760289	1.06	[{'connected_gene': 'LYSMD2', 'score': 22.89}, {'connected_gene': 'ENSG00000259712', 'score': 20.68}, {'connected_gene': 'ENSG00000260618', 'score': 16.1}, {'connected_gene': 'FAM214A', 'score': 11.9}, {'connected_gene': 'ENSG00000259935', 'score': 11.25}, {'connected_gene': 'SCG3', 'score': 11.01}, {'connected_gene': 'AP4E1', 'score': 10.46}, {'connected_gene': 'DMXL2', 'score': 4.18}, {'connected_gene': 'ENSG00000259377', 'score': 0.44}, {'connected_gene': 'TMOD2', 'score': 0.44}, {'connected_gene': 'GC15P051815', 'score': 0.22}]
chr15	GH15I051862	51862920	51865771	0.72	[{'connected_gene': 'LYSMD2', 'score': 27.86}, {'connected_gene': 'TMOD3', 'score': 21.79}, {'connected_gene': 'ENSG00000259935', 'score': 13.36}, {'connected_gene': 'ENSG00000260618', 'score': 13.19}, {'connected_gene': 'AP4E1', 'score': 11.33}, {'connected_gene': 'LOC100422556', 'score': 11.0}, {'connected_gene': 'FAM214A', 'score': 10.31}, {'connected_gene': 'ENSG00000259712', 'score': 9.93}, {'connected_gene': 'LOC100422490', 'score': 0.77}, {'connected_gene': 'GC15P051886', 'score': 0.34}]
chr15	GH15I052642	52642214	52643735	0.51	[{'connected_gene': 'ARPP19', 'score': 12.3}, {'connected_gene': 'FAM214A', 'score': 11.6}, {'connected_gene': 'ENSG00000259935', 'score': 6.11}, {'connected_gene': 'ENSG00000260618', 'score': 0.2}]
chr15	GH15I052665	52665756	52668652	0.52	[{'connected_gene': 'ARPP19', 'score': 12.26}, {'connected_gene': 'ENSG00000259935', 'score': 6.09}, {'connected_gene': 'LOC105370821', 'score': 0.39}, {'connected_gene': 'FAM214A', 'score': 0.26}]
chr15	GH15I052629	52629399	52632032	0.2	[{'connected_gene': 'GNB5', 'score': 10.49}, {'connected_gene': 'ARPP19', 'score': 7.07}, {'connected_gene': 'ENSG00000259935', 'score': 6.47}, {'connected_gene': 'ENSG00000260618', 'score': 0.23}, {'connected_gene': 'FAM214A', 'score': 0.18}]
chr15	GH15I052685	52685204	52685353	0.4	[{'connected_gene': 'LOC105370821', 'score': 0.44}, {'connected_gene': 'FAM214A', 'score': 0.34}]
chr15	GH15I052052	52052103	52053846	0.77	[{'connected_gene': 'ENSG00000260618', 'score': 16.1}, {'connected_gene': 'FAM214A', 'score': 11.91}, {'connected_gene': 'ENSG00000259935', 'score': 11.25}, {'connected_gene': 'ENSG00000259712', 'score': 10.81}, {'connected_gene': 'LYSMD2', 'score': 7.2}, {'connected_gene': 'ENSG00000259398', 'score': 0.37}, {'connected_gene': 'ENSG00000259178', 'score': 0.31}, {'connected_gene': 'GC15P052002', 'score': 0.23}, {'connected_gene': 'MAPK6', 'score': 0.15}]
chr15	GH15I052010	52010544	52012404	1.23	[{'connected_gene': 'ENSG00000259935', 'score': 13.43}, {'connected_gene': 'ENSG00000260618', 'score': 12.58}, {'connected_gene': 'FAM214A', 'score': 11.76}, {'connected_gene': 'ENSG00000259712', 'score': 11.3}, {'connected_gene': 'LEO1', 'score': 10.96}, {'connected_gene': 'GNB5', 'score': 10.17}, {'connected_gene': 'MYO5C', 'score': 10.03}, {'connected_gene': 'ENSG00000259438', 'score': 0.44}, {'connected_gene': 'GC15P052002', 'score': 0.44}, {'connected_gene': 'ENSG00000274528', 'score': 0.44}, {'connected_gene': 'MAPK6', 'score': 0.22}]
chr15	GH15I052606	52606966	52610588	0.38	[{'connected_gene': 'ENSG00000259935', 'score': 6.88}, {'connected_gene': 'ENSG00000260618', 'score': 0.29}, {'connected_gene': 'FAM214A', 'score': 0.15}]
chr15	GH15I052659	52659084	52659273	0.74	[{'connected_gene': 'ENSG00000259935', 'score': 0.44}, {'connected_gene': 'LOC105370821', 'score': 0.34}, {'connected_gene': 'FAM214A', 'score': 0.23}]
chr15	GH15I052657	52657444	52657593	0.58	[{'connected_gene': 'ENSG00000259935', 'score': 0.44}, {'connected_gene': 'LOC105370821', 'score': 0.34}, {'connected_gene': 'FAM214A', 'score': 0.23}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000261844	[[52873517, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970319], [52970768, 52970820]]	[[52874350, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000534964	[[52873517, 52874504], [52876941, 52877141], [52879252, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970319], [52970626, 52970956]]	[[52879332, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000399202	[[52876939, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52970202, 52970319], [52970900, 52970953]]	[[52876939, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903911]]
ENST00000562135	[[52903429, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970319], [52970900, 52970953]]	[[52903429, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000566768	[[52903797, 52903974], [52905869, 52906054], [52970202, 52970319], [52971472, 52971569]]	[[52903797, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000561490	[[52903821, 52903974], [52905869, 52906054], [52970202, 52970319], [53001922, 53002014]]	[[52903821, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000561543	[[52903890, 52903974], [52905869, 52906054], [52970202, 52970319], [52971024, 52971569]]	[[52903890, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000568863	[[52903907, 52903974], [52905869, 52906054], [52970202, 52970418]]	[[52903907, 52903974], [52905869, 52906054], [52970202, 52970218]]
ENST00000562351	[[52950326, 52950994], [52970202, 52970319], [52970626, 52970757]]	None
ENST00000568871	[[52873513, 52874504], [52876941, 52877520]]	None
ENST00000546305	[[52874049, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52944066, 52944247]]	[[52874350, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52944066, 52944103]]
ENST00000568637	[[52874384, 52874504], [52876941, 52877141], [52885774, 52885933], [52892323, 52892432], [52893282, 52893361]]	[[52874384, 52874504], [52876941, 52877141], [52885774, 52885933], [52892323, 52892432], [52893282, 52893361]]
ENST00000570204	[[52877101, 52877141], [52879347, 52879416], [52885774, 52885933], [52893282, 52893362], [52897329, 52897374]]	[[52885920, 52885933], [52893282, 52893362], [52897329, 52897374]]
ENST00000566948	[[52878218, 52879416], [52885774, 52885933], [52893282, 52893362], [52897329, 52897443], [52900764, 52900793]]	None
ENST00000568668	[[52885613, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897388]]	None
NR_104457	[[52873517, 52874504], [52876941, 52877141], [52879252, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970319], [52970626, 52970831]]	None
NM_019600	[[52873517, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970319], [52970768, 52970831]]	[[52874350, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52970202, 52970218]]
NM_001286495	[[52873517, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52944066, 52944247]]	[[52874350, 52874504], [52876941, 52877141], [52879347, 52879416], [52885774, 52885933], [52892323, 52892432], [52893282, 52893362], [52897329, 52897443], [52900764, 52902580], [52903326, 52903452], [52903771, 52903974], [52905869, 52906054], [52944066, 52944103]]