PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367012	[[210406143, 210406356], [210411288, 210411480], [210412837, 210412953], [210414902, 210419600]]	[[210411305, 210411480], [210412837, 210412953], [210414902, 210415682]]
ENST00000490620	[[210410626, 210410813], [210411288, 210411480], [210412837, 210412953], [210414902, 210415510]]	None
ENST00000482421	[[210411287, 210411480], [210412837, 210412953], [210419144, 210419272], [210419916, 210419973]]	None
ENST00000483884	[[210411322, 210411480], [210419112, 210419272], [210419916, 210419976]]	None
NM_019605	[[210406194, 210406356], [210411288, 210411480], [210412837, 210412953], [210414902, 210416460]]	[[210411305, 210411480], [210412837, 210412953], [210414902, 210415682]]

Promoter

Chrom	Start	End	Description
chr1	210406014	210406041	CAGE_peak_5_at_SERTAD4_5end
chr1	210406121	210406162	CAGE_peak_1_at_SERTAD4_5end
chr1	210406165	210406186	CAGE_peak_4_at_SERTAD4_5end
chr1	210406223	210406234	CAGE_peak_6_at_SERTAD4_5end
chr1	210410624	210410632	CAGE_peak_3_at_SERTAD4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I210213	210213192	210213475	0.44	[{'connected_gene': 'SERTAD4-AS1', 'score': 11.51}, {'connected_gene': 'TRAF3IP3', 'score': 5.61}, {'connected_gene': 'SERTAD4', 'score': 0.37}, {'connected_gene': 'SYT14', 'score': 0.06}]
chr1	GH01I210342	210342977	210344200	1.03	[{'connected_gene': 'SERTAD4-AS1', 'score': 16.88}, {'connected_gene': 'TRAF3IP3', 'score': 12.94}, {'connected_gene': 'RCOR3', 'score': 11.99}, {'connected_gene': 'RNU5A-8P', 'score': 11.87}, {'connected_gene': 'SERTAD4', 'score': 10.86}, {'connected_gene': 'HHAT', 'score': 8.67}, {'connected_gene': 'PIR50724', 'score': 0.34}]
chr1	GH01I210259	210259871	210263913	0.96	[{'connected_gene': 'SERTAD4-AS1', 'score': 17.34}, {'connected_gene': 'SERTAD4', 'score': 11.21}, {'connected_gene': 'TRAF3IP3', 'score': 9.98}, {'connected_gene': 'IRF6', 'score': 4.78}, {'connected_gene': 'ST13P19', 'score': 0.44}, {'connected_gene': 'GC01P210243', 'score': 0.37}]
chr1	GH01I210232	210232176	210234925	1.9	[{'connected_gene': 'SERTAD4-AS1', 'score': 562.1}, {'connected_gene': 'SERTAD4', 'score': 550.77}, {'connected_gene': 'TRAF3IP3', 'score': 6.25}]
chr1	GH01I210392	210392938	210395470	1.28	[{'connected_gene': 'SERTAD4-AS1', 'score': 5.3}, {'connected_gene': 'SERTAD4', 'score': 4.8}, {'connected_gene': 'HHAT', 'score': 4.66}, {'connected_gene': 'SYT14', 'score': 1.76}, {'connected_gene': 'RNU5A-8P', 'score': 0.37}, {'connected_gene': 'GC01M210375', 'score': 0.37}, {'connected_gene': 'LOC100421537', 'score': 0.2}]
chr1	GH01I210222	210222396	210223663	0.66	[{'connected_gene': 'SERTAD4-AS1', 'score': 9.05}, {'connected_gene': 'SERTAD4', 'score': 0.44}, {'connected_gene': 'SYT14', 'score': 0.06}]
chr1	GH01I210399	210399577	210399706	0.57	[{'connected_gene': 'SERTAD4-AS1', 'score': 5.87}, {'connected_gene': 'SERTAD4', 'score': 4.22}, {'connected_gene': 'RNU5A-8P', 'score': 0.31}, {'connected_gene': 'GC01M210375', 'score': 0.31}, {'connected_gene': 'LOC100421537', 'score': 0.21}, {'connected_gene': 'HHAT', 'score': 0.19}]
chr1	GH01I210271	210271795	210273488	0.49	[{'connected_gene': 'SERTAD4-AS1', 'score': 11.08}, {'connected_gene': 'SERTAD4', 'score': 11.08}, {'connected_gene': 'ST13P19', 'score': 0.44}, {'connected_gene': 'GC01P210292', 'score': 0.37}]
chr1	GH01I210260	210259576	210259805	0.43	[{'connected_gene': 'SERTAD4-AS1', 'score': 19.68}, {'connected_gene': 'SERTAD4', 'score': 11.21}, {'connected_gene': 'ST13P19', 'score': 0.44}, {'connected_gene': 'GC01P210243', 'score': 0.37}]
chr1	GH01I210239	210239087	210240816	0.97	[{'connected_gene': 'SERTAD4-AS1', 'score': 11.49}, {'connected_gene': 'GC01P210243', 'score': 0.77}, {'connected_gene': 'SERTAD4', 'score': 0.44}]
chr1	GH01I210331	210331804	210333546	1.02	[{'connected_gene': 'SERTAD4-AS1', 'score': 15.67}, {'connected_gene': 'HHAT', 'score': 10.06}, {'connected_gene': 'SERTAD4', 'score': 9.82}, {'connected_gene': 'PIR50724', 'score': 0.29}]
chr1	GH01I211197	211197884	211199197	0.38	[{'connected_gene': 'SERTAD4', 'score': 5.45}, {'connected_gene': 'ENSG00000284376', 'score': 0.44}, {'connected_gene': 'LOC388734', 'score': 0.44}, {'connected_gene': 'ENSG00000283952', 'score': 0.39}]
chr1	GH01I210328	210328025	210329866	1.93	[{'connected_gene': 'HHAT', 'score': 557.48}, {'connected_gene': 'SERTAD4-AS1', 'score': 15.65}, {'connected_gene': 'RCOR3', 'score': 9.97}, {'connected_gene': 'SERTAD4', 'score': 9.82}, {'connected_gene': 'PIR50724', 'score': 0.28}]
chr1	GH01I210236	210236263	210238442	1.12	[{'connected_gene': 'HHAT', 'score': 11.18}, {'connected_gene': 'DIEXF', 'score': 10.74}, {'connected_gene': 'SERTAD4-AS1', 'score': 0.77}, {'connected_gene': 'SERTAD4', 'score': 0.77}, {'connected_gene': 'GC01P210243', 'score': 0.44}]
chr1	GH01I210012	210012694	210013000	0.22	[{'connected_gene': 'SYT14', 'score': 1.34}, {'connected_gene': 'SERTAD4', 'score': 0.08}]
chr1	GH01I210371	210371982	210375342	1.28	[{'connected_gene': 'RNU5A-8P', 'score': 550.77}, {'connected_gene': 'GC01M210375', 'score': 550.77}, {'connected_gene': 'RCOR3', 'score': 39.77}, {'connected_gene': 'SERTAD4-AS1', 'score': 14.9}, {'connected_gene': 'SERTAD4', 'score': 13.77}, {'connected_gene': 'ST13P19', 'score': 11.49}, {'connected_gene': 'DIEXF', 'score': 11.07}, {'connected_gene': 'HHAT', 'score': 4.4}, {'connected_gene': 'PIR50724', 'score': 0.44}]
chr1	GH01I210264	210264242	210266244	0.59	[{'connected_gene': 'ST13P19', 'score': 550.77}, {'connected_gene': 'SERTAD4-AS1', 'score': 11.19}, {'connected_gene': 'SERTAD4', 'score': 11.19}, {'connected_gene': 'TRAF3IP3', 'score': 9.93}, {'connected_gene': 'GC01P210243', 'score': 0.34}]