PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000446900	[[89401455, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430238, 89430395], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89453934, 89454038]]	None
ENST00000370491	[[89401455, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89458267, 89458459]]	[[89401865, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435147]]
ENST00000260508	[[89401498, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89453934, 89454034], [89458267, 89458604]]	[[89401865, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150]]
ENST00000370485	[[89401541, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430238, 89430395], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89453934, 89454034], [89458267, 89458287]]	[[89430344, 89430395], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150]]
ENST00000370486	[[89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89453934, 89454034], [89458267, 89458431], [89458569, 89458636]]	[[89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150]]
NM_001008661	[[89401455, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89453934, 89454034], [89458267, 89458643]]	[[89401865, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150]]
NM_001008662	[[89401455, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435150], [89458267, 89458643]]	[[89401865, 89401928], [89408687, 89408774], [89409032, 89409106], [89414773, 89414960], [89418745, 89418835], [89420831, 89420908], [89426849, 89426970], [89427063, 89427189], [89427741, 89427828], [89430511, 89430661], [89434352, 89434497], [89435091, 89435147]]

Promoter

Chrom	Start	End	Description
chr1	89458299	89458321	CAGE_peak_1_at_CCBL2_5end
chr1	89458335	89458346	CAGE_peak_3_at_CCBL2_5end
chr1	89458415	89458463	CAGE_peak_1_at_RBMXL1_5end,CAGE_peak_2_at_CCBL2_5end
chr1	89458476	89458490	CAGE_peak_5_at_CCBL2_5end
chr1	89458607	89458627	CAGE_peak_4_at_CCBL2_5end
chr1	89458651	89458685	CAGE_peak_2_at_RBMXL1_5end,CAGE_peak_6_at_CCBL2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I088611	88611568	88613865	0.54	[{'connected_gene': 'KYAT3', 'score': 15.56}, {'connected_gene': 'PKN2', 'score': 6.17}, {'connected_gene': 'LOC105378838', 'score': 0.77}, {'connected_gene': 'RPL36AP10', 'score': 0.29}, {'connected_gene': 'PKN2-AS1', 'score': 0.19}]
chr1	GH01I088722	88722847	88723081	0.22	[{'connected_gene': 'KYAT3', 'score': 31.47}, {'connected_gene': 'GC01M088742', 'score': 0.37}, {'connected_gene': 'GC01P088703', 'score': 0.37}, {'connected_gene': 'PKN2', 'score': 0.28}]
chr1	GH01I088776	88776238	88776367	0.2	[{'connected_gene': 'KYAT3', 'score': 8.21}, {'connected_gene': 'GC01M088742', 'score': 0.29}, {'connected_gene': 'GC01P088818', 'score': 0.26}, {'connected_gene': 'PKN2', 'score': 0.16}]
chr1	GH01I088772	88772690	88775893	0.89	[{'connected_gene': 'KYAT3', 'score': 7.32}, {'connected_gene': 'GC01M088742', 'score': 0.29}, {'connected_gene': 'GC01P088818', 'score': 0.26}, {'connected_gene': 'PKN2', 'score': 0.16}]
chr1	GH01I088990	88990547	88994566	2.49	[{'connected_gene': 'KYAT3', 'score': 550.77}, {'connected_gene': 'RBMXL1', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 86.11}, {'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'GBP7', 'score': 5.12}, {'connected_gene': 'PTGES3P1', 'score': 4.75}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I088662	88661001	88661400	0.2	[{'connected_gene': 'KYAT3', 'score': 27.15}, {'connected_gene': 'GC01M088677', 'score': 0.37}, {'connected_gene': 'PKN2-AS1', 'score': 0.34}, {'connected_gene': 'LOC105378838', 'score': 0.25}]
chr1	GH01I088661	88661518	88663077	0.38	[{'connected_gene': 'KYAT3', 'score': 28.88}, {'connected_gene': 'GC01M088677', 'score': 0.37}, {'connected_gene': 'PKN2-AS1', 'score': 0.34}, {'connected_gene': 'LOC105378838', 'score': 0.25}]
chr1	GH01I088867	88867368	88868527	0.56	[{'connected_gene': 'KYAT3', 'score': 32.4}, {'connected_gene': 'LOC100130455', 'score': 11.7}, {'connected_gene': 'PKN2', 'score': 10.37}, {'connected_gene': 'GTF2B', 'score': 0.34}, {'connected_gene': 'GC01M088841', 'score': 0.31}]
chr1	GH01I088220	88220393	88222057	0.8	[{'connected_gene': 'KYAT3', 'score': 4.91}, {'connected_gene': 'GC01P088185', 'score': 0.28}, {'connected_gene': 'GC01P088266', 'score': 0.26}]
chr1	GH01I088682	88682334	88686789	2.11	[{'connected_gene': 'PKN2', 'score': 613.9}, {'connected_gene': 'PKN2-AS1', 'score': 550.77}, {'connected_gene': 'KYAT3', 'score': 54.13}, {'connected_gene': 'ELOCP19', 'score': 14.8}, {'connected_gene': 'LOC100130455', 'score': 11.27}, {'connected_gene': 'RBMXL1', 'score': 10.37}, {'connected_gene': 'PTGES3P1', 'score': 9.78}]
chr1	GH01I088889	88889569	88893602	2.42	[{'connected_gene': 'GTF2B', 'score': 550.77}, {'connected_gene': 'KYAT3', 'score': 65.83}, {'connected_gene': 'PKN2', 'score': 41.89}, {'connected_gene': 'ELOCP19', 'score': 13.9}, {'connected_gene': 'LOC100130455', 'score': 13.11}, {'connected_gene': 'PTGES3P1', 'score': 9.81}, {'connected_gene': 'RBMXL1', 'score': 4.45}, {'connected_gene': 'GC01M088841', 'score': 0.25}]
chr1	GH01I089354	89354201	89354600	0.66	[{'connected_gene': 'GBP2', 'score': 13.37}, {'connected_gene': 'GBP5', 'score': 10.15}, {'connected_gene': 'GBP1', 'score': 9.3}, {'connected_gene': 'GBP4', 'score': 7.52}, {'connected_gene': 'GTF2B', 'score': 5.81}, {'connected_gene': 'KYAT3', 'score': 2.76}, {'connected_gene': 'LRRC8C', 'score': 1.7}, {'connected_gene': 'GBP6', 'score': 0.44}, {'connected_gene': 'PIR56754', 'score': 0.39}]
chr1	GH01I089277	89277765	89280569	1.09	[{'connected_gene': 'GBP1', 'score': 35.51}, {'connected_gene': 'GBP5', 'score': 32.1}, {'connected_gene': 'GBP4', 'score': 29.22}, {'connected_gene': 'GBP2', 'score': 12.04}, {'connected_gene': 'LOC100421401', 'score': 10.69}, {'connected_gene': 'GBP7', 'score': 9.72}, {'connected_gene': 'GTF2B', 'score': 5.74}, {'connected_gene': 'LRRC8C', 'score': 2.83}, {'connected_gene': 'KYAT3', 'score': 1.73}, {'connected_gene': 'GBP3', 'score': 1.7}, {'connected_gene': 'GC01P089283', 'score': 0.77}]
chr1	GH01I088983	88983458	88986492	1	[{'connected_gene': 'GBP6', 'score': 10.73}, {'connected_gene': 'RBMXL1', 'score': 10.62}, {'connected_gene': 'GBP5', 'score': 10.42}, {'connected_gene': 'LOC100421401', 'score': 10.22}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'GC01M088952', 'score': 0.29}]
chr1	GH01I089123	89123001	89123200	0.4	[{'connected_gene': 'GBP5', 'score': 11.24}, {'connected_gene': 'GBP2', 'score': 11.18}, {'connected_gene': 'GBP4', 'score': 10.97}, {'connected_gene': 'GBP7', 'score': 10.36}, {'connected_gene': 'KYAT3', 'score': 4.48}, {'connected_gene': 'LOC105378842', 'score': 0.44}, {'connected_gene': 'PTGES3P1', 'score': 0.37}]
chr1	GH01I088989	88989801	88990000	0.38	[{'connected_gene': 'GBP5', 'score': 10.91}, {'connected_gene': 'GBP6', 'score': 10.8}, {'connected_gene': 'KYAT3', 'score': 0.77}, {'connected_gene': 'RBMXL1', 'score': 0.77}, {'connected_gene': 'GC01M088952', 'score': 0.28}]
chr1	GH01I088998	88998818	88998967	0.57	[{'connected_gene': 'GC01P089002', 'score': 0.77}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'RBMXL1', 'score': 0.44}]
chr1	GH01I089001	89001251	89001492	0.26	[{'connected_gene': 'GC01P089002', 'score': 550.77}, {'connected_gene': 'GBP3', 'score': 24.37}, {'connected_gene': 'GBP5', 'score': 10.39}, {'connected_gene': 'GBP7', 'score': 9.74}, {'connected_gene': 'GTF2B', 'score': 1.37}, {'connected_gene': 'GBP2', 'score': 1.26}, {'connected_gene': 'KYAT3', 'score': 0.44}, {'connected_gene': 'RBMXL1', 'score': 0.44}]
chr1	GH01I088936	88936118	88936135	0.56	[{'connected_gene': 'GC01M088909', 'score': 0.44}, {'connected_gene': 'LOC100130455', 'score': 0.39}, {'connected_gene': 'KYAT3', 'score': 0.22}]