PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000361005	[[33750514, 33750725], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799229]]	[[33750514, 33750725], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
ENST00000468152	[[33750676, 33750725], [33762054, 33762161], [33796640, 33796800], [33797826, 33797922]]	None
ENST00000457896	[[33750687, 33750725], [33794743, 33794871], [33796640, 33796800], [33797826, 33798080], [33798483, 33798526]]	[[33794795, 33794871], [33796640, 33796800], [33797826, 33798080], [33798483, 33798526]]
ENST00000342836	[[33750687, 33750725], [33794743, 33794871], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799230]]	[[33794789, 33794871], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
ENST00000429677	[[33750818, 33750850], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799228]]	[[33750831, 33750850], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
ENST00000379405	[[33795532, 33795611], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799229]]	[[33795571, 33795611], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
ENST00000477653	[[33795567, 33795611], [33797826, 33797975]]	None
ENST00000495682	[[33798515, 33798749], [33798853, 33799227]]	None
NM_007343	[[33750463, 33750725], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799229]]	[[33750514, 33750725], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
NM_001197097	[[33750463, 33750725], [33794743, 33794871], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799229]]	[[33794789, 33794871], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
NM_001197098	[[33750818, 33750850], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799229]]	[[33750831, 33750850], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]
NM_002771	[[33795558, 33795611], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799229]]	[[33795571, 33795611], [33796640, 33796800], [33797826, 33798080], [33798483, 33798620], [33799025, 33799178]]

Promoter

Chrom	Start	End	Description
chr9	33750637	33750648	CAGE_peak_2_at_PRSS3_5end
chr9	33750667	33750685	CAGE_peak_1_at_PRSS3_5end
chr9	33795549	33795562	CAGE_peak_3_at_PRSS3_5end
chr9	33798017	33798022	CAGE_peak_8_at_PRSS3_5end
chr9	33798033	33798042	CAGE_peak_7_at_PRSS3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I033774	33774353	33774736	0.58	[{'connected_gene': 'TRBV29OR9-2', 'score': 0.39}, {'connected_gene': 'PRSS3', 'score': 0.34}]
chr9	GH09I033787	33787485	33788132	0.31	[{'connected_gene': 'TRBV29OR9-2', 'score': 550.77}, {'connected_gene': 'GC09P034201', 'score': 550.77}, {'connected_gene': 'SNORD121B', 'score': 10.6}, {'connected_gene': 'UBAP2', 'score': 10.56}, {'connected_gene': 'NUDT2', 'score': 6.65}, {'connected_gene': 'UBE2R2', 'score': 0.31}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.29}, {'connected_gene': 'PRSS3', 'score': 0.28}]
chr9	GH09I033786	33786320	33786974	0.46	[{'connected_gene': 'TRBV29OR9-2', 'score': 550.77}, {'connected_gene': 'GC09P034201', 'score': 550.77}, {'connected_gene': 'SNORD121B', 'score': 10.6}, {'connected_gene': 'UBAP2', 'score': 10.56}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.29}, {'connected_gene': 'UBE2R2', 'score': 0.29}, {'connected_gene': 'PRSS3', 'score': 0.28}]
chr9	GH09I033749	33749843	33753998	1.64	[{'connected_gene': 'PRSS3', 'score': 557.2}, {'connected_gene': 'ENSG00000260947', 'score': 19.01}, {'connected_gene': 'TRBV26OR9-2', 'score': 11.97}, {'connected_gene': 'RNU4ATAC11P', 'score': 11.43}, {'connected_gene': 'UBE2R2', 'score': 10.98}, {'connected_gene': 'UBAP2', 'score': 10.55}, {'connected_gene': 'LINC01251', 'score': 8.68}, {'connected_gene': 'ENSG00000227301', 'score': 5.04}, {'connected_gene': 'NOL6', 'score': 4.59}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.29}]
chr9	GH09I033748	33748623	33749438	0.46	[{'connected_gene': 'PRSS3', 'score': 557.67}, {'connected_gene': 'TRBV26OR9-2', 'score': 12.13}, {'connected_gene': 'LINC01251', 'score': 8.64}, {'connected_gene': 'ENSG00000260947', 'score': 8.15}, {'connected_gene': 'LOC102724216', 'score': 0.37}]
chr9	GH09I033742	33742623	33742772	0.74	[{'connected_gene': 'PRSS3', 'score': 6.86}, {'connected_gene': 'LINC01251', 'score': 0.77}, {'connected_gene': 'LOC102724216', 'score': 0.39}]
chr9	GH09I033741	33741538	33742219	0.2	[{'connected_gene': 'PRSS3', 'score': 7.25}, {'connected_gene': 'LINC01251', 'score': 0.77}, {'connected_gene': 'LOC102724216', 'score': 0.39}]
chr9	GH09I033795	33795512	33795571	1.09	[{'connected_gene': 'PRSS3', 'score': 550.25}, {'connected_gene': 'GC09P034201', 'score': 0.44}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.34}, {'connected_gene': 'UBE2R2', 'score': 0.34}]
chr9	GH09I034046	34046773	34050698	2.08	[{'connected_gene': 'UBAP2', 'score': 562.24}, {'connected_gene': 'RN7SKP114', 'score': 550.77}, {'connected_gene': 'SMU1', 'score': 43.04}, {'connected_gene': 'ENSG00000228352', 'score': 38.55}, {'connected_gene': 'NFX1', 'score': 19.19}, {'connected_gene': 'NOL6', 'score': 11.82}, {'connected_gene': 'B4GALT1', 'score': 10.78}, {'connected_gene': 'UBE2R2', 'score': 8.43}, {'connected_gene': 'PRSS3', 'score': 7.6}, {'connected_gene': 'ENSG00000260947', 'score': 7.0}, {'connected_gene': 'KIF24', 'score': 6.13}, {'connected_gene': 'C9orf24', 'score': 4.66}, {'connected_gene': 'DCAF12', 'score': 4.63}, {'connected_gene': 'OSTCP8', 'score': 4.26}, {'connected_gene': 'PIR49648', 'score': 0.39}]
chr9	GH09I033778	33778638	33780643	1.11	[{'connected_gene': 'UBE2R2', 'score': 18.01}, {'connected_gene': 'SMU1', 'score': 14.76}, {'connected_gene': 'TCEA1P4', 'score': 13.94}, {'connected_gene': 'NFX1', 'score': 12.65}, {'connected_gene': 'ENSG00000260947', 'score': 10.02}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.44}, {'connected_gene': 'PRSS3', 'score': 0.31}]
chr9	GH09I033813	33813238	33820185	2.55	[{'connected_gene': 'UBE2R2', 'score': 565.8}, {'connected_gene': 'UBAP1', 'score': 12.35}, {'connected_gene': 'PRSS3', 'score': 7.43}, {'connected_gene': 'ENSG00000260947', 'score': 4.44}, {'connected_gene': 'ENSG00000230074', 'score': 4.22}, {'connected_gene': 'UBAP2', 'score': 4.17}, {'connected_gene': 'DCAF12', 'score': 3.96}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.77}, {'connected_gene': 'GC09P034201', 'score': 0.29}]
chr9	GH09I033776	33776910	33777739	0.54	[{'connected_gene': 'UBE2R2', 'score': 11.95}, {'connected_gene': 'ENSG00000260947', 'score': 10.94}, {'connected_gene': 'NUDT2', 'score': 9.29}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.44}, {'connected_gene': 'PRSS3', 'score': 0.31}]
chr9	GH09I033792	33792452	33792757	0.2	[{'connected_gene': 'UBE2R2', 'score': 11.56}, {'connected_gene': 'SNORD121A', 'score': 9.5}, {'connected_gene': 'GC09P034201', 'score': 0.44}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.31}, {'connected_gene': 'PRSS3', 'score': 0.26}]
chr9	GH09I033791	33791115	33792130	0.49	[{'connected_gene': 'UBE2R2', 'score': 17.56}, {'connected_gene': 'SNORD121A', 'score': 9.33}, {'connected_gene': 'ENSG00000260947', 'score': 8.1}, {'connected_gene': 'GC09P034201', 'score': 0.44}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.31}, {'connected_gene': 'PRSS3', 'score': 0.26}]
chr9	GH09I033793	33793793	33794187	0.2	[{'connected_gene': 'UBE2R2', 'score': 11.56}, {'connected_gene': 'SNORD121A', 'score': 9.51}, {'connected_gene': 'ENSG00000260947', 'score': 7.45}, {'connected_gene': 'GC09P034201', 'score': 0.44}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.34}, {'connected_gene': 'PRSS3', 'score': 0.26}]
chr9	GH09I034027	34027264	34029462	0.49	[{'connected_gene': 'NFX1', 'score': 17.58}, {'connected_gene': 'ENSG00000228352', 'score': 13.26}, {'connected_gene': 'NOL6', 'score': 12.21}, {'connected_gene': 'SMU1', 'score': 12.04}, {'connected_gene': 'NUDT2', 'score': 8.07}, {'connected_gene': 'PRSS3', 'score': 7.6}, {'connected_gene': 'ENSG00000260947', 'score': 7.32}, {'connected_gene': 'UBE2R2', 'score': 7.03}, {'connected_gene': 'DCAF12', 'score': 5.7}, {'connected_gene': 'RNU7-36P', 'score': 0.39}, {'connected_gene': 'PIR49648', 'score': 0.39}, {'connected_gene': 'UBAP2', 'score': 0.34}]
chr9	GH09I033510	33510081	33512024	1.42	[{'connected_gene': 'SUGT1P1', 'score': 550.77}, {'connected_gene': 'VN1R47P', 'score': 550.77}, {'connected_gene': 'PIR50034', 'score': 550.77}, {'connected_gene': 'ANKRD18B', 'score': 12.51}, {'connected_gene': 'PRSS3', 'score': 5.63}]
chr9	GH09I033613	33613914	33614122	0.24	[{'connected_gene': 'PRSS3P4', 'score': 550.77}, {'connected_gene': 'PRSS3', 'score': 73.71}, {'connected_gene': 'LINC01251', 'score': 6.77}, {'connected_gene': 'ENSG00000260947', 'score': 6.01}, {'connected_gene': 'TRBV20OR9-2', 'score': 0.77}]
chr9	GH09I033759	33759187	33760399	0.83	[{'connected_gene': 'LINC01251', 'score': 6.76}, {'connected_gene': 'PRSS3', 'score': 0.44}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.31}]
chr9	GH09I033739	33739023	33740360	0.76	[{'connected_gene': 'LINC01251', 'score': 550.77}, {'connected_gene': 'IMPDH1P1', 'score': 10.01}, {'connected_gene': 'PRSS3', 'score': 9.91}, {'connected_gene': 'ENSG00000260947', 'score': 9.89}, {'connected_gene': 'ENSG00000227301', 'score': 5.14}, {'connected_gene': 'KIF24', 'score': 4.02}, {'connected_gene': 'LOC102724216', 'score': 0.44}]
chr9	GH09I033798	33798308	33798959	0.43	[{'connected_gene': 'SNORD121B', 'score': 10.04}, {'connected_gene': 'UBAP2', 'score': 9.99}, {'connected_gene': 'SNORD121A', 'score': 9.32}, {'connected_gene': 'IMPDH1P1', 'score': 9.17}, {'connected_gene': 'DCAF12', 'score': 9.17}, {'connected_gene': 'ENSG00000260947', 'score': 7.91}, {'connected_gene': 'GC09P034201', 'score': 0.39}, {'connected_gene': 'UBE2R2', 'score': 0.37}, {'connected_gene': 'UBE2R2-AS1', 'score': 0.34}, {'connected_gene': 'PRSS3', 'score': 0.25}]
chr9	GH09I033721	33721803	33722555	1.15	[{'connected_gene': 'ENSG00000260947', 'score': 19.01}, {'connected_gene': 'AQP7', 'score': 10.83}, {'connected_gene': 'LOC105376020', 'score': 10.83}, {'connected_gene': 'PRSS3', 'score': 7.07}, {'connected_gene': 'ENSG00000227301', 'score': 0.77}, {'connected_gene': 'LOC102724216', 'score': 0.44}]
chr9	GH09I033763	33763403	33766244	0.69	[{'connected_gene': 'ENSG00000260947', 'score': 9.79}, {'connected_gene': 'NUDT2', 'score': 9.02}, {'connected_gene': 'LINC01251', 'score': 7.6}, {'connected_gene': 'TRBV26OR9-2', 'score': 6.23}, {'connected_gene': 'ENSG00000227301', 'score': 5.02}, {'connected_gene': 'PRSS3', 'score': 0.39}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.34}]
chr9	GH09I033772	33772735	33773978	0.2	[{'connected_gene': 'ENSG00000260947', 'score': 8.17}, {'connected_gene': 'CYP4F26P', 'score': 4.7}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.39}, {'connected_gene': 'PRSS3', 'score': 0.34}]
chr9	GH09I033769	33769338	33771647	0.8	[{'connected_gene': 'ENSG00000260947', 'score': 8.18}, {'connected_gene': 'LINC01251', 'score': 5.42}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.37}, {'connected_gene': 'PRSS3', 'score': 0.34}]
chr9	GH09I033766	33766914	33768213	0.84	[{'connected_gene': 'ENSG00000260947', 'score': 18.97}, {'connected_gene': 'LINC01251', 'score': 10.8}, {'connected_gene': 'PRSS3', 'score': 5.47}, {'connected_gene': 'TRBV29OR9-2', 'score': 0.37}]