PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000477339	[[4726156, 4726275], [4788499, 4788571], [5009499, 5009540], [5010877, 5011060]]	None
ENST00000380390	[[4788499, 4788571], [5009297, 5009540], [5010877, 5011098], [5011827, 5011976], [5012600, 5012726], [5013193, 5013355], [5013443, 5013659]]	[[5009441, 5009540], [5010877, 5011098], [5011827, 5011976], [5012600, 5012726], [5013193, 5013355], [5013443, 5013472]]
ENST00000300762	[[5009423, 5009540], [5010877, 5011098], [5011827, 5011976], [5012600, 5012726], [5013193, 5013355], [5013443, 5013657]]	[[5009441, 5009540], [5010877, 5011098], [5011827, 5011976], [5012600, 5012726], [5013193, 5013355], [5013443, 5013472]]
NM_021801	[[5009420, 5009540], [5010877, 5011098], [5011827, 5011976], [5012600, 5012726], [5013193, 5013355], [5013443, 5013659]]	[[5009441, 5009540], [5010877, 5011098], [5011827, 5011976], [5012600, 5012726], [5013193, 5013355], [5013443, 5013472]]

Promoter

Chrom	Start	End	Description
chr11	4726012	4726018	CAGE_peak_1_at_MMP26_5end
chr11	4726112	4726125	CAGE_peak_2_at_MMP26_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I005328	5328996	5329360	0.24	[{'connected_gene': 'OR51G1', 'score': 21.09}, {'connected_gene': 'OR51T1', 'score': 14.97}, {'connected_gene': 'OR52N2', 'score': 8.73}, {'connected_gene': 'OR52N4', 'score': 8.12}, {'connected_gene': 'OR52D1', 'score': 6.53}, {'connected_gene': 'OR52J3', 'score': 6.32}, {'connected_gene': 'MMP26', 'score': 3.98}, {'connected_gene': 'OR51L1', 'score': 3.83}, {'connected_gene': 'OR51B2', 'score': 3.4}, {'connected_gene': 'OR51M1', 'score': 3.0}, {'connected_gene': 'OR52N5', 'score': 2.95}, {'connected_gene': 'OR51V1', 'score': 2.46}, {'connected_gene': 'OR51G2', 'score': 2.22}, {'connected_gene': 'OR52N1', 'score': 2.12}, {'connected_gene': 'OR52A1', 'score': 2.0}, {'connected_gene': 'OR51B6', 'score': 1.93}, {'connected_gene': 'OR51Q1', 'score': 1.66}, {'connected_gene': 'OR51S1', 'score': 1.36}, {'connected_gene': 'OR56B1', 'score': 1.29}, {'connected_gene': 'OR51B8P', 'score': 0.77}, {'connected_gene': 'ENSG00000167355', 'score': 0.1}, {'connected_gene': 'HBE1', 'score': 0.1}, {'connected_gene': 'GC11P005064', 'score': 0.07}, {'connected_gene': 'HBG2', 'score': 0.06}]
chr11	GH11I004988	4988130	4988189	0.68	[{'connected_gene': 'MMP26', 'score': 550.06}, {'connected_gene': 'OR51F1', 'score': 9.42}, {'connected_gene': 'C11orf40', 'score': 8.91}, {'connected_gene': 'OR51L1', 'score': 0.44}, {'connected_gene': 'OR51A5P', 'score': 0.39}, {'connected_gene': 'GC11P004912', 'score': 0.18}, {'connected_gene': 'GC11P004911', 'score': 0.18}]
chr11	GH11I004881	4881833	4882613	0.68	[{'connected_gene': 'OR51T1', 'score': 550.77}, {'connected_gene': 'OR51F2', 'score': 9.78}, {'connected_gene': 'OR51A6P', 'score': 0.44}, {'connected_gene': 'MMP26', 'score': 0.1}]
chr11	GH11I004862	4862591	4863261	0.31	[{'connected_gene': 'OR51H1', 'score': 550.77}, {'connected_gene': 'OR51A6P', 'score': 15.6}, {'connected_gene': 'OR51S1', 'score': 0.77}, {'connected_gene': 'MMP26', 'score': 0.1}]
chr11	GH11I004892	4892211	4892260	0.6	[{'connected_gene': 'OR51A6P', 'score': 550.77}, {'connected_gene': 'OR51G1', 'score': 10.77}, {'connected_gene': 'OR51H1', 'score': 10.48}, {'connected_gene': 'OR51A7', 'score': 0.39}, {'connected_gene': 'MMP26', 'score': 0.09}]
chr11	GH11I005379	5379987	5379996	0.22	[{'connected_gene': 'OR51V1', 'score': 12.94}, {'connected_gene': 'OR51T1', 'score': 11.06}, {'connected_gene': 'HBB', 'score': 9.71}, {'connected_gene': 'OR51B5', 'score': 9.65}, {'connected_gene': 'OR51G1', 'score': 8.88}, {'connected_gene': 'OR56B1', 'score': 8.32}, {'connected_gene': 'OR52J3', 'score': 8.02}, {'connected_gene': 'OR51L1', 'score': 6.09}, {'connected_gene': 'OR52N4', 'score': 5.61}, {'connected_gene': 'OR52D1', 'score': 5.04}, {'connected_gene': 'OR52E2', 'score': 4.79}, {'connected_gene': 'OR52N5', 'score': 3.88}, {'connected_gene': 'OR52N2', 'score': 3.02}, {'connected_gene': 'OR52N1', 'score': 2.97}, {'connected_gene': 'MMP26', 'score': 2.64}, {'connected_gene': 'OR51B2', 'score': 2.05}, {'connected_gene': 'OR51M1', 'score': 1.92}, {'connected_gene': 'OR51G2', 'score': 1.92}, {'connected_gene': 'OR51I1', 'score': 1.91}, {'connected_gene': 'OR52A1', 'score': 1.74}, {'connected_gene': 'OR51Q1', 'score': 1.66}, {'connected_gene': 'OR52E6', 'score': 1.6}, {'connected_gene': 'GC11P005378', 'score': 0.77}, {'connected_gene': 'ENSG00000167355', 'score': 0.13}, {'connected_gene': 'HBE1', 'score': 0.13}, {'connected_gene': 'HBG2', 'score': 0.06}, {'connected_gene': 'GC11P005064', 'score': 0.06}]
chr11	GH11I004703	4703954	4705052	0.43	[{'connected_gene': 'PIR59773', 'score': 550.77}, {'connected_gene': 'GC11M004706', 'score': 550.77}, {'connected_gene': 'GC11M004707', 'score': 550.77}, {'connected_gene': 'GC11M004705', 'score': 550.77}, {'connected_gene': 'MMP26', 'score': 550.77}, {'connected_gene': 'OR51E1', 'score': 5.07}, {'connected_gene': 'OR51E2', 'score': 0.44}, {'connected_gene': 'GC11M004678', 'score': 0.34}]