PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000282146	[[90528108, 90528883], [90650454, 90652201]]	[[90528549, 90528883], [90650454, 90651347]]
NM_022054	[[90528108, 90528883], [90650454, 90652201]]	[[90528549, 90528883], [90650454, 90651347]]

Promoter

Chrom	Start	End	Description
chr14	90528333	90528366	CAGE_peak_1_at_KCNK13_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I090368	90368954	90370190	0.85	[{'connected_gene': 'CALM1', 'score': 11.91}, {'connected_gene': 'NRDE2', 'score': 10.98}, {'connected_gene': 'KCNK13', 'score': 4.57}, {'connected_gene': 'RPL21P11', 'score': 0.77}, {'connected_gene': 'GC14P090384', 'score': 0.39}]
chr14	GH14I090255	90255937	90257801	2.02	[{'connected_gene': 'PSMC1', 'score': 550.77}, {'connected_gene': 'KCNK13', 'score': 7.19}, {'connected_gene': 'GC14P090272', 'score': 0.37}]
chr14	GH14I090296	90295601	90297009	0.86	[{'connected_gene': 'PSMC1', 'score': 11.71}, {'connected_gene': 'NRDE2', 'score': 11.7}, {'connected_gene': 'KCNK13', 'score': 8.74}, {'connected_gene': 'PIR41665', 'score': 0.44}, {'connected_gene': 'PIR47953', 'score': 0.37}]
chr14	GH14I089919	89919670	89920671	0.31	[{'connected_gene': 'KCNK13', 'score': 10.51}, {'connected_gene': 'RAB42P1', 'score': 0.31}, {'connected_gene': 'EFCAB11', 'score': 0.29}, {'connected_gene': 'ENSG00000259053', 'score': 0.29}]
chr14	GH14I089921	89921167	89923280	0.51	[{'connected_gene': 'KCNK13', 'score': 10.52}, {'connected_gene': 'TDP1', 'score': 6.37}, {'connected_gene': 'EFCAB11', 'score': 0.29}, {'connected_gene': 'ENSG00000259053', 'score': 0.29}, {'connected_gene': 'RAB42P1', 'score': 0.29}]
chr14	GH14I090062	90062617	90062766	0.56	[{'connected_gene': 'KCNK13', 'score': 550.77}, {'connected_gene': 'TDP1', 'score': 9.15}, {'connected_gene': 'GLRXP2', 'score': 0.26}]
chr14	GH14I089998	89998856	89999040	0.23	[{'connected_gene': 'KCNK13', 'score': 11.06}, {'connected_gene': 'GC14M092124', 'score': 0.37}, {'connected_gene': 'TDP1', 'score': 0.26}]
chr14	GH14I090060	90060400	90060686	1.39	[{'connected_gene': 'KCNK13', 'score': 550.77}, {'connected_gene': 'TDP1', 'score': 4.82}, {'connected_gene': 'PIR51411', 'score': 0.37}]
chr14	GH14I090022	90022236	90023523	0.2	[{'connected_gene': 'KCNK13', 'score': 11.5}, {'connected_gene': 'GC14M092124', 'score': 0.77}, {'connected_gene': 'PIR51411', 'score': 0.34}, {'connected_gene': 'TDP1', 'score': 0.2}]
chr14	GH14I089959	89959896	89960699	0.38	[{'connected_gene': 'KCNK13', 'score': 10.39}, {'connected_gene': 'TDP1', 'score': 0.44}, {'connected_gene': 'GC14M092124', 'score': 0.22}]
chr14	GH14I090094	90094338	90094597	0.27	[{'connected_gene': 'KCNK13', 'score': 28.96}, {'connected_gene': 'GLRXP2', 'score': 0.39}]
chr14	GH14I090103	90103957	90104106	0.59	[{'connected_gene': 'KCNK13', 'score': 15.88}, {'connected_gene': 'GLRXP2', 'score': 0.77}]
chr14	GH14I090061	90061800	90062401	1.17	[{'connected_gene': 'KCNK13', 'score': 550.77}, {'connected_gene': 'GLRXP2', 'score': 0.25}]
chr14	GH14I090064	90064201	90064600	0.31	[{'connected_gene': 'KCNK13', 'score': 0.77}, {'connected_gene': 'GLRXP2', 'score': 0.26}]
chr14	GH14I090087	90087479	90087801	1.1	[{'connected_gene': 'KCNK13', 'score': 15.96}, {'connected_gene': 'GLRXP2', 'score': 0.37}]
chr14	GH14I090356	90356929	90357944	0.54	[{'connected_gene': 'KCNK13', 'score': 5.98}, {'connected_gene': 'LOC105370618', 'score': 0.44}, {'connected_gene': 'NRDE2', 'score': 0.31}]
chr14	GH14I090354	90354777	90356821	0.84	[{'connected_gene': 'KCNK13', 'score': 6.41}, {'connected_gene': 'LOC105370618', 'score': 0.44}, {'connected_gene': 'NRDE2', 'score': 0.34}]
chr14	GH14I090235	90235201	90235673	0.82	[{'connected_gene': 'KCNK13', 'score': 8.7}, {'connected_gene': 'GC14M092126', 'score': 0.39}, {'connected_gene': 'ENSG00000201351', 'score': 0.22}]
chr14	GH14I090170	90170717	90170866	0.31	[{'connected_gene': 'KCNK13', 'score': 10.73}, {'connected_gene': 'GC14P090179', 'score': 0.44}, {'connected_gene': 'GC14P090108', 'score': 0.21}]
chr14	GH14I090171	90170943	90171322	0.2	[{'connected_gene': 'KCNK13', 'score': 10.73}, {'connected_gene': 'GC14P090179', 'score': 0.44}, {'connected_gene': 'GC14P090108', 'score': 0.21}]
chr14	GH14I090063	90061649	90061708	0.76	[{'connected_gene': 'KCNK13', 'score': 550.77}, {'connected_gene': 'PIR51411', 'score': 0.37}]
chr14	GH14I089953	89953579	89958301	2.08	[{'connected_gene': 'TDP1', 'score': 561.99}, {'connected_gene': 'EFCAB11', 'score': 550.77}, {'connected_gene': 'ENSG00000259053', 'score': 550.77}, {'connected_gene': 'NRDE2', 'score': 32.54}, {'connected_gene': 'KCNK13', 'score': 10.79}, {'connected_gene': 'GC14M092124', 'score': 0.21}]
chr14	GH14I090300	90300600	90305882	1.2	[{'connected_gene': 'NRDE2', 'score': 18.15}, {'connected_gene': 'CALM1', 'score': 15.44}, {'connected_gene': 'KCNK13', 'score': 8.93}, {'connected_gene': 'PIR47953', 'score': 0.44}, {'connected_gene': 'PIR41665', 'score': 0.39}]
chr14	GH14I090298	90298500	90300342	1.22	[{'connected_gene': 'NRDE2', 'score': 16.86}, {'connected_gene': 'CALM1', 'score': 4.94}, {'connected_gene': 'KCNK13', 'score': 3.38}, {'connected_gene': 'PIR47953', 'score': 0.39}, {'connected_gene': 'PIR41665', 'score': 0.39}]
chr14	GH14I090140	90140512	90141726	0.96	[{'connected_gene': 'NRDE2', 'score': 17.68}, {'connected_gene': 'RPS18P2', 'score': 10.5}, {'connected_gene': 'GC14P090108', 'score': 0.29}, {'connected_gene': 'GC14P090179', 'score': 0.28}, {'connected_gene': 'KCNK13', 'score': 0.18}]
chr14	GH14I090141	90140357	90140506	0.74	[{'connected_gene': 'NRDE2', 'score': 17.68}, {'connected_gene': 'RPS18P2', 'score': 10.5}, {'connected_gene': 'GC14P090108', 'score': 0.29}, {'connected_gene': 'GC14P090179', 'score': 0.28}, {'connected_gene': 'KCNK13', 'score': 0.18}]
chr14	GH14I089909	89909629	89913706	1.41	[{'connected_gene': 'NRDE2', 'score': 10.68}, {'connected_gene': 'RPL21P11', 'score': 9.7}, {'connected_gene': 'TDP1', 'score': 7.59}, {'connected_gene': 'EFCAB11', 'score': 6.15}, {'connected_gene': 'FOXN3', 'score': 5.24}, {'connected_gene': 'KCNK13', 'score': 1.47}, {'connected_gene': 'RAB42P1', 'score': 0.37}, {'connected_gene': 'ENSG00000259053', 'score': 0.26}]
chr14	GH14I089301	89301864	89309799	1.61	[{'connected_gene': 'CAP2P1', 'score': 5.78}, {'connected_gene': 'KCNK13', 'score': 5.1}, {'connected_gene': 'FOXN3', 'score': 4.17}, {'connected_gene': 'GC14M092114', 'score': 0.29}, {'connected_gene': 'GC14M092133', 'score': 0.28}]
chr14	GH14I090157	90157972	90159986	0.46	[{'connected_gene': 'GC14P090179', 'score': 0.37}, {'connected_gene': 'GC14P090108', 'score': 0.23}, {'connected_gene': 'KCNK13', 'score': 0.15}]
chr14	GH14I090112	90112337	90112486	0.43	[{'connected_gene': 'GC14P090108', 'score': 0.77}, {'connected_gene': 'KCNK13', 'score': 0.23}, {'connected_gene': 'GC14P090179', 'score': 0.21}]
chr14	GH14I090380	90380312	90386146	1.83	[{'connected_gene': 'GC14P090384', 'score': 550.77}, {'connected_gene': 'ENSG00000275198', 'score': 550.77}, {'connected_gene': 'NRDE2', 'score': 10.86}, {'connected_gene': 'CALM1', 'score': 6.34}, {'connected_gene': 'ENSG00000258424', 'score': 5.05}, {'connected_gene': 'KCNK13', 'score': 4.58}, {'connected_gene': 'RPL21P11', 'score': 0.37}]
chr14	GH14I090289	90289859	90291251	0.2	[{'connected_gene': 'PIR41665', 'score': 550.77}, {'connected_gene': 'NRDE2', 'score': 15.49}, {'connected_gene': 'CALM1', 'score': 10.82}, {'connected_gene': 'KCNK13', 'score': 7.17}, {'connected_gene': 'PIR47953', 'score': 0.34}]
chr14	GH14I090273	90273973	90277187	0.94	[{'connected_gene': 'PIR51620', 'score': 550.77}, {'connected_gene': 'NRDE2', 'score': 11.27}, {'connected_gene': 'KCNK13', 'score': 8.83}, {'connected_gene': 'GC14M092131', 'score': 0.44}, {'connected_gene': 'PSMC1', 'score': 0.37}]