PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000406487	[[43568362, 43568753], [43570668, 43570752], [43575851, 43576106], [43579505, 43579784], [43585032, 43585398], [43586657, 43586820]]	[[43570708, 43570752], [43575851, 43576106], [43579505, 43579784], [43585032, 43585398], [43586657, 43586721]]
ENST00000329509	[[43569640, 43570042], [43570668, 43570752], [43575851, 43576106], [43579505, 43579559]]	[[43570708, 43570752], [43575851, 43576106], [43579505, 43579559]]
ENST00000593482	[[43575922, 43576106], [43576502, 43576781], [43587103, 43587197]]	None
ENST00000491995	[[43585938, 43586423], [43586657, 43586820]]	None
NM_031246	[[43568361, 43568753], [43570668, 43570752], [43575851, 43576106], [43579505, 43579784], [43585032, 43585398], [43586657, 43586893]]	[[43570708, 43570752], [43575851, 43576106], [43579505, 43579784], [43585032, 43585398], [43586657, 43586721]]

Promoter

Chrom	Start	End	Description
chr19	43576049	43576055	CAGE_peak_3_at_PSG2_5end
chr19	43576091	43576105	CAGE_peak_2_at_PSG2_5end
chr19	43586845	43586863	CAGE_peak_1_at_PSG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I043077	43077456	43080567	0.72	[{'connected_gene': 'ZNF45', 'score': 16.11}, {'connected_gene': 'ZNF155', 'score': 13.16}, {'connected_gene': 'ZNF526', 'score': 12.78}, {'connected_gene': 'PSG4', 'score': 11.0}, {'connected_gene': 'ZNF284', 'score': 10.45}, {'connected_gene': 'ENSG00000231412', 'score': 6.18}, {'connected_gene': 'PSG2', 'score': 0.77}, {'connected_gene': 'GC19M043036', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.26}, {'connected_gene': 'ENSG00000282943', 'score': 0.15}, {'connected_gene': 'PSG5', 'score': 0.14}]
chr19	GH19I043061	43061449	43061678	0.2	[{'connected_gene': 'PSG4', 'score': 5.33}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.31}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]
chr19	GH19I043082	43082658	43082717	0.68	[{'connected_gene': 'PSG2', 'score': 550.77}, {'connected_gene': 'PSG4', 'score': 9.7}, {'connected_gene': 'GC19M043036', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.25}, {'connected_gene': 'PSG5', 'score': 0.15}, {'connected_gene': 'ENSG00000282943', 'score': 0.14}]
chr19	GH19I043060	43059589	43059738	0.2	[{'connected_gene': 'POU2F2', 'score': 4.27}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.34}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]
chr19	GH19I043059	43059829	43061384	0.2	[{'connected_gene': 'ENSG00000231412', 'score': 5.76}, {'connected_gene': 'PSG4', 'score': 5.72}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.31}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]