PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366175	[[43670407, 43670994], [43674206, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690688]]	[[43674246, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690557]]
ENST00000407356	[[43671894, 43672287], [43674206, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690642]]	[[43674246, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690557]]
ENST00000407568	[[43671894, 43672355], [43674206, 43674290], [43688933, 43689299], [43690493, 43690646]]	[[43674246, 43674290], [43688933, 43689299], [43690493, 43690557]]
ENST00000599812	[[43671894, 43672355], [43674206, 43674290], [43679366, 43679621], [43680021, 43680300], [43683030, 43683309], [43688933, 43689299], [43690493, 43690653]]	[[43674246, 43674290], [43679366, 43679621], [43680021, 43680300], [43683030, 43683309], [43688933, 43689299], [43690493, 43690557]]
ENST00000342951	[[43671894, 43672355], [43674206, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690674]]	[[43674246, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690557]]
ENST00000401942	[[43671923, 43672287], [43674206, 43674723]]	None
ENST00000599214	[[43672273, 43672355], [43674206, 43674717]]	None
ENST00000404580	[[43678274, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690646]]	[[43679328, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690557]]
ENST00000600817	[[43679814, 43680300], [43688933, 43689299], [43690493, 43690646]]	None
ENST00000489220	[[43684498, 43684748], [43688933, 43689087]]	None
ENST00000401992	[[43687433, 43687623], [43688933, 43689299], [43690493, 43690658]]	None
NM_002781	[[43671894, 43672355], [43674206, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690688]]	[[43674246, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690557]]
NM_001130014	[[43671894, 43672287], [43674206, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690688]]	[[43674246, 43674290], [43679366, 43679621], [43680021, 43680300], [43688933, 43689299], [43690493, 43690557]]

Promoter

Chrom	Start	End	Description
chr19	43690649	43690663	CAGE_peak_2_at_PSG5_5end
chr19	43690679	43690695	CAGE_peak_1_at_PSG5_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I043077	43077456	43080567	0.72	[{'connected_gene': 'ZNF45', 'score': 16.11}, {'connected_gene': 'ZNF155', 'score': 13.16}, {'connected_gene': 'ZNF526', 'score': 12.78}, {'connected_gene': 'PSG4', 'score': 11.0}, {'connected_gene': 'ZNF284', 'score': 10.45}, {'connected_gene': 'ENSG00000231412', 'score': 6.18}, {'connected_gene': 'PSG2', 'score': 0.77}, {'connected_gene': 'GC19M043036', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.26}, {'connected_gene': 'ENSG00000282943', 'score': 0.15}, {'connected_gene': 'PSG5', 'score': 0.14}]
chr19	GH19I043119	43119189	43121192	0.63	[{'connected_gene': 'ZNF45', 'score': 27.08}, {'connected_gene': 'ZNF526', 'score': 21.03}, {'connected_gene': 'ZNF224', 'score': 15.39}, {'connected_gene': 'ZNF225', 'score': 14.19}, {'connected_gene': 'ZNF155', 'score': 13.17}, {'connected_gene': 'PSG4', 'score': 11.53}, {'connected_gene': 'XRCC1', 'score': 10.78}, {'connected_gene': 'ZNF284', 'score': 10.45}, {'connected_gene': 'CD177', 'score': 4.34}, {'connected_gene': 'GC19P043117', 'score': 0.77}, {'connected_gene': 'ENSG00000227606', 'score': 0.29}, {'connected_gene': 'PSG5', 'score': 0.2}, {'connected_gene': 'GC19P043035', 'score': 0.17}, {'connected_gene': 'ENSG00000282943', 'score': 0.11}]
chr19	GH19I043263	43263938	43269598	1.58	[{'connected_gene': 'PSG9', 'score': 550.77}, {'connected_gene': 'PSG4', 'score': 24.06}, {'connected_gene': 'LOC100505715', 'score': 15.85}, {'connected_gene': 'ZNF428', 'score': 13.66}, {'connected_gene': 'ZNF575', 'score': 13.43}, {'connected_gene': 'LOC100379224', 'score': 12.64}, {'connected_gene': 'MEGF8', 'score': 12.24}, {'connected_gene': 'ZNF404', 'score': 11.62}, {'connected_gene': 'ZNF576', 'score': 11.3}, {'connected_gene': 'PSG5', 'score': 11.15}, {'connected_gene': 'IRGQ', 'score': 9.89}, {'connected_gene': 'ENSG00000231412', 'score': 8.21}, {'connected_gene': 'CEACAMP10', 'score': 0.37}, {'connected_gene': 'LOC284344', 'score': 0.37}]
chr19	GH19I043180	43180897	43187276	1.57	[{'connected_gene': 'PSG5', 'score': 566.96}, {'connected_gene': 'PSG4', 'score': 52.75}, {'connected_gene': 'ZNF45', 'score': 38.42}, {'connected_gene': 'ZNF225', 'score': 35.58}, {'connected_gene': 'ZNF283', 'score': 26.55}, {'connected_gene': 'ZNF155', 'score': 23.04}, {'connected_gene': 'ZNF221', 'score': 22.86}, {'connected_gene': 'ZNF223', 'score': 20.95}, {'connected_gene': 'ZNF226', 'score': 20.27}, {'connected_gene': 'ZNF234', 'score': 19.53}, {'connected_gene': 'ZNF576', 'score': 13.73}, {'connected_gene': 'ZNF224', 'score': 13.68}, {'connected_gene': 'ZNF284', 'score': 11.77}, {'connected_gene': 'ZNF526', 'score': 10.82}, {'connected_gene': 'PINLYP', 'score': 10.73}, {'connected_gene': 'IRGQ', 'score': 9.96}, {'connected_gene': 'ENSG00000231412', 'score': 6.78}, {'connected_gene': 'LOC100421300', 'score': 0.77}]
chr19	GH19I043200	43200105	43206293	1.6	[{'connected_gene': 'PSG4', 'score': 607.12}, {'connected_gene': 'ZNF223', 'score': 49.22}, {'connected_gene': 'ZNF576', 'score': 48.39}, {'connected_gene': 'ZNF221', 'score': 45.25}, {'connected_gene': 'ZNF225', 'score': 42.47}, {'connected_gene': 'ZNF283', 'score': 42.0}, {'connected_gene': 'ZNF226', 'score': 40.82}, {'connected_gene': 'ZNF45', 'score': 33.68}, {'connected_gene': 'LOC101928063', 'score': 23.4}, {'connected_gene': 'ENSG00000267191', 'score': 23.23}, {'connected_gene': 'ZNF284', 'score': 19.87}, {'connected_gene': 'ZNF224', 'score': 13.68}, {'connected_gene': 'ZNF234', 'score': 11.46}, {'connected_gene': 'ZNF155', 'score': 11.23}, {'connected_gene': 'PINLYP', 'score': 10.74}, {'connected_gene': 'ZNF222', 'score': 10.56}, {'connected_gene': 'ZNF404', 'score': 10.52}, {'connected_gene': 'IRGQ', 'score': 9.96}, {'connected_gene': 'PSG5', 'score': 6.41}, {'connected_gene': 'ENSG00000231412', 'score': 6.07}]
chr19	GH19I043149	43149969	43150138	0.31	[{'connected_gene': 'PSG4', 'score': 10.14}, {'connected_gene': 'ENSG00000227606', 'score': 0.77}, {'connected_gene': 'GC19P043117', 'score': 0.29}, {'connected_gene': 'PSG5', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.13}, {'connected_gene': 'ENSG00000282943', 'score': 0.09}]
chr19	GH19I043147	43147630	43149552	0.43	[{'connected_gene': 'PSG4', 'score': 48.35}, {'connected_gene': 'PSG5', 'score': 10.64}, {'connected_gene': 'ENSG00000227606', 'score': 0.77}, {'connected_gene': 'GC19P043117', 'score': 0.29}, {'connected_gene': 'GC19P043035', 'score': 0.14}, {'connected_gene': 'ENSG00000282943', 'score': 0.09}]
chr19	GH19I043061	43061449	43061678	0.2	[{'connected_gene': 'PSG4', 'score': 5.33}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.31}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]
chr19	GH19I042874	42874129	42877976	1.03	[{'connected_gene': 'PSG4', 'score': 5.17}, {'connected_gene': 'ENSG00000231412', 'score': 5.17}, {'connected_gene': 'MEGF8', 'score': 4.31}, {'connected_gene': 'PSG5', 'score': 2.02}, {'connected_gene': 'GC19P042872', 'score': 0.77}, {'connected_gene': 'PSG1', 'score': 0.77}]
chr19	GH19I043082	43082658	43082717	0.68	[{'connected_gene': 'PSG2', 'score': 550.77}, {'connected_gene': 'PSG4', 'score': 9.7}, {'connected_gene': 'GC19M043036', 'score': 0.28}, {'connected_gene': 'GC19P043035', 'score': 0.25}, {'connected_gene': 'PSG5', 'score': 0.15}, {'connected_gene': 'ENSG00000282943', 'score': 0.14}]
chr19	GH19I043060	43059589	43059738	0.2	[{'connected_gene': 'POU2F2', 'score': 4.27}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.34}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]
chr19	GH19I042760	42760143	42763591	1.17	[{'connected_gene': 'PSG8', 'score': 15.87}, {'connected_gene': 'PSG5', 'score': 2.26}, {'connected_gene': 'CEACAM1', 'score': 1.43}, {'connected_gene': 'GC19M042749', 'score': 0.44}, {'connected_gene': 'PSG3', 'score': 0.34}]
chr19	GH19I043126	43126596	43130222	0.43	[{'connected_gene': 'ENSG00000231412', 'score': 7.6}, {'connected_gene': 'PSG4', 'score': 6.91}, {'connected_gene': 'PSG5', 'score': 4.61}, {'connected_gene': 'GC19P043117', 'score': 0.39}, {'connected_gene': 'ENSG00000227606', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.16}, {'connected_gene': 'ENSG00000282943', 'score': 0.1}]
chr19	GH19I043059	43059829	43061384	0.2	[{'connected_gene': 'ENSG00000231412', 'score': 5.76}, {'connected_gene': 'PSG4', 'score': 5.72}, {'connected_gene': 'GC19M043036', 'score': 0.37}, {'connected_gene': 'PSG2', 'score': 0.34}, {'connected_gene': 'GC19P043035', 'score': 0.31}, {'connected_gene': 'ENSG00000282943', 'score': 0.18}, {'connected_gene': 'PSG5', 'score': 0.13}]