PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000366911	[[161551010, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161574377, 161574531], [161575180, 161575342], [161653067, 161653334], [161694969, 161695057]]	[[161574514, 161574531], [161575180, 161575342], [161653067, 161653245]]
ENST00000320285	[[161551056, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161574377, 161574531], [161575180, 161575342], [161587279, 161587449], [161653067, 161653334], [161694969, 161695093]]	[[161557571, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161574377, 161574531], [161575180, 161575342], [161587279, 161587449], [161653067, 161653245]]
ENST00000457520	[[161557286, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161653067, 161653334], [161694969, 161695077]]	[[161557571, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161653067, 161653245]]
ENST00000366908	[[161567554, 161567631], [161570218, 161570321], [161574377, 161575342], [161586608, 161586745], [161587279, 161587449], [161653067, 161653334], [161694969, 161695051]]	[[161586691, 161586745], [161587279, 161587449], [161653067, 161653245]]
ENST00000436279	[[161570236, 161570287], [161574377, 161574531], [161575180, 161575342], [161586608, 161586745], [161587279, 161587449], [161653067, 161653268]]	[[161586691, 161586745], [161587279, 161587449], [161653067, 161653245]]
ENST00000366906	[[161574692, 161575342], [161587279, 161587449], [161694969, 161695082]]	[[161575129, 161575342], [161587279, 161587441]]
ENST00000366905	[[161586869, 161587449], [161653067, 161653334], [161694969, 161695064]]	[[161587147, 161587449], [161653067, 161653245]]
ENST00000437165	[[161564987, 161565298], [161567555, 161567631], [161570218, 161570321]]	[[161565160, 161565298], [161567555, 161567631], [161570218, 161570321]]
NM_020133	[[161551056, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161574377, 161574531], [161575180, 161575342], [161587279, 161587449], [161653067, 161653334], [161694969, 161695107]]	[[161557571, 161557666], [161560453, 161560652], [161567555, 161567631], [161570218, 161570321], [161574377, 161574531], [161575180, 161575342], [161587279, 161587449], [161653067, 161653245]]

Promoter

Chrom	Start	End	Description
chr6	161695019	161695036	CAGE_peak_3_at_AGPAT4_5end
chr6	161695042	161695064	CAGE_peak_2_at_AGPAT4_5end
chr6	161695074	161695112	CAGE_peak_1_at_AGPAT4_5end
chr6	161695118	161695131	CAGE_peak_4_at_AGPAT4_5end
chr6	161695185	161695199	CAGE_peak_5_at_AGPAT4_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr6	GH06I161163	161163629	161163778	0.63	[{'connected_gene': 'AGPAT4-IT1', 'score': 550.77}, {'connected_gene': 'PIR49622', 'score': 0.77}, {'connected_gene': 'AGPAT4', 'score': 0.14}]
chr6	GH06I161160	161160174	161161094	0.51	[{'connected_gene': 'AGPAT4-IT1', 'score': 550.77}, {'connected_gene': 'PIR56804', 'score': 0.34}, {'connected_gene': 'AGPAT4', 'score': 0.14}]
chr6	GH06I161151	161151380	161154139	0.69	[{'connected_gene': 'AGPAT4', 'score': 19.48}, {'connected_gene': 'AGPAT4-IT1', 'score': 0.44}, {'connected_gene': 'PIR56804', 'score': 0.39}]
chr6	GH06I161242	161242065	161244085	1.33	[{'connected_gene': 'AGPAT4', 'score': 13.12}, {'connected_gene': 'MAP3K4', 'score': 1.34}, {'connected_gene': 'GC06P161252', 'score': 0.44}, {'connected_gene': 'PIR49622', 'score': 0.18}]
chr6	GH06I161225	161225354	161230058	1.6	[{'connected_gene': 'AGPAT4', 'score': 28.55}, {'connected_gene': 'MAP3K4', 'score': 1.53}, {'connected_gene': 'GC06P161252', 'score': 0.31}, {'connected_gene': 'PIR49622', 'score': 0.21}]
chr6	GH06I161115	161115612	161115686	0.59	[{'connected_gene': 'AGPAT4', 'score': 8.17}, {'connected_gene': 'PIR62103', 'score': 0.37}, {'connected_gene': 'GC06P161073', 'score': 0.26}, {'connected_gene': 'MAP3K4', 'score': 0.13}]
chr6	GH06I161292	161292462	161293155	0.38	[{'connected_gene': 'AGPAT4', 'score': 0.37}, {'connected_gene': 'LOC105378094', 'score': 0.26}]
chr6	GH06I161360	161360706	161360830	0.54	[{'connected_gene': 'AGPAT4', 'score': 1.31}, {'connected_gene': 'LOC105378094', 'score': 0.34}, {'connected_gene': 'GC06P161404', 'score': 0.26}]
chr6	GH06I161375	161375001	161376200	1.2	[{'connected_gene': 'AGPAT4', 'score': 4.41}, {'connected_gene': 'GC06P161404', 'score': 0.31}, {'connected_gene': 'LOC105378094', 'score': 0.28}]
chr6	GH06I161368	161368801	161370308	0.99	[{'connected_gene': 'AGPAT4', 'score': 4.53}, {'connected_gene': 'LOC105378094', 'score': 0.29}, {'connected_gene': 'GC06P161404', 'score': 0.28}]
chr6	GH06I161293	161292249	161292458	0.38	[{'connected_gene': 'AGPAT4', 'score': 0.37}, {'connected_gene': 'LOC105378094', 'score': 0.26}]
chr6	GH06I161359	161359369	161359842	1.08	[{'connected_gene': 'AGPAT4', 'score': 5.18}, {'connected_gene': 'LOC105378094', 'score': 0.34}, {'connected_gene': 'GC06P161404', 'score': 0.25}]
chr6	GH06I161198	161198400	161198968	0.63	[{'connected_gene': 'AGPAT4', 'score': 12.39}, {'connected_gene': 'PIR49622', 'score': 0.29}, {'connected_gene': 'GC06P161252', 'score': 0.23}]
chr6	GH06I161179	161179753	161184960	0.31	[{'connected_gene': 'AGPAT4', 'score': 6.49}, {'connected_gene': 'PIR49622', 'score': 0.37}, {'connected_gene': 'GC06P161252', 'score': 0.19}]
chr6	GH06I161185	161185970	161186785	1.2	[{'connected_gene': 'AGPAT4', 'score': 1.91}, {'connected_gene': 'PIR49622', 'score': 0.34}, {'connected_gene': 'GC06P161252', 'score': 0.2}]
chr6	GH06I161244	161244769	161244878	1.01	[{'connected_gene': 'AGPAT4', 'score': 11.14}, {'connected_gene': 'GC06P161252', 'score': 0.44}, {'connected_gene': 'PIR49622', 'score': 0.18}]
chr6	GH06I161188	161188602	161190445	0.46	[{'connected_gene': 'AGPAT4', 'score': 8.5}, {'connected_gene': 'PIR49622', 'score': 0.34}, {'connected_gene': 'GC06P161252', 'score': 0.21}]
chr6	GH06I161214	161214334	161216979	1.23	[{'connected_gene': 'AGPAT4', 'score': 21.12}, {'connected_gene': 'GC06P161252', 'score': 0.28}, {'connected_gene': 'PIR49622', 'score': 0.25}]
chr6	GH06I161206	161206771	161207921	0.54	[{'connected_gene': 'AGPAT4', 'score': 20.52}, {'connected_gene': 'PIR49622', 'score': 0.26}, {'connected_gene': 'GC06P161252', 'score': 0.25}]
chr6	GH06I161128	161128521	161128998	0.69	[{'connected_gene': 'AGPAT4', 'score': 10.45}, {'connected_gene': 'PIR62103', 'score': 0.77}, {'connected_gene': 'GC06P161073', 'score': 0.22}]
chr6	GH06I161238	161238512	161238842	0.82	[{'connected_gene': 'AGPAT4', 'score': 2.64}, {'connected_gene': 'GC06P161252', 'score': 0.39}, {'connected_gene': 'PIR49622', 'score': 0.19}]
chr6	GH06I161217	161217805	161218308	0.46	[{'connected_gene': 'AGPAT4', 'score': 11.76}, {'connected_gene': 'GC06P161252', 'score': 0.29}, {'connected_gene': 'PIR49622', 'score': 0.23}]
chr6	GH06I161233	161233924	161235019	0.89	[{'connected_gene': 'AGPAT4', 'score': 12.15}, {'connected_gene': 'GC06P161252', 'score': 0.37}, {'connected_gene': 'PIR49622', 'score': 0.2}]
chr6	GH06I161124	161124819	161125079	0.44	[{'connected_gene': 'AGPAT4', 'score': 2.17}, {'connected_gene': 'PIR62103', 'score': 0.44}, {'connected_gene': 'GC06P161073', 'score': 0.23}]
chr6	GH06I161222	161222511	161223544	0.38	[{'connected_gene': 'AGPAT4', 'score': 11.77}, {'connected_gene': 'GC06P161252', 'score': 0.31}, {'connected_gene': 'PIR49622', 'score': 0.22}]
chr6	GH06I161199	161199634	161201602	0.43	[{'connected_gene': 'AGPAT4', 'score': 9.96}, {'connected_gene': 'PIR49622', 'score': 0.29}, {'connected_gene': 'GC06P161252', 'score': 0.23}]
chr6	GH06I161167	161167774	161170722	1.59	[{'connected_gene': 'AGPAT4', 'score': 6.69}, {'connected_gene': 'PIR49622', 'score': 0.77}, {'connected_gene': 'GC06P161252', 'score': 0.18}]
chr6	GH06I161208	161208538	161209863	0.38	[{'connected_gene': 'AGPAT4', 'score': 9.58}, {'connected_gene': 'GC06P161252', 'score': 0.26}, {'connected_gene': 'PIR49622', 'score': 0.26}]
chr6	GH06I161195	161195181	161196544	0.43	[{'connected_gene': 'AGPAT4', 'score': 10.89}, {'connected_gene': 'PIR49622', 'score': 0.31}, {'connected_gene': 'GC06P161252', 'score': 0.22}]
chr6	GH06I161268	161268503	161268943	0.8	[{'connected_gene': 'AGPAT4', 'score': 0.44}, {'connected_gene': 'GC06P161252', 'score': 0.37}]
chr6	GH06I161270	161270929	161272450	0.62	[{'connected_gene': 'AGPAT4', 'score': 0.77}, {'connected_gene': 'GC06P161252', 'score': 0.37}]
chr6	GH06I161265	161265389	161267710	0.59	[{'connected_gene': 'AGPAT4', 'score': 0.44}, {'connected_gene': 'GC06P161252', 'score': 0.39}]
chr6	GH06I161272	161272516	161274848	2.21	[{'connected_gene': 'AGPAT4', 'score': 555.13}, {'connected_gene': 'GC06P161252', 'score': 0.34}]
chr6	GH06I161263	161263744	161265175	0.43	[{'connected_gene': 'AGPAT4', 'score': 0.44}, {'connected_gene': 'GC06P161252', 'score': 0.39}]
chr6	GH06I161443	161443735	161445458	0.97	[{'connected_gene': 'MAP3K4', 'score': 5.7}, {'connected_gene': 'AGPAT4', 'score': 1.82}, {'connected_gene': 'LOC105378098', 'score': 0.31}, {'connected_gene': 'GC06P161404', 'score': 0.28}]
chr6	GH06I161226	161225009	161225158	0.8	[{'connected_gene': 'MAP3K4', 'score': 33.03}, {'connected_gene': 'AGPAT4', 'score': 21.29}, {'connected_gene': 'GC06P161252', 'score': 0.31}, {'connected_gene': 'PIR49622', 'score': 0.22}]
chr6	GH06I161204	161204565	161205697	1.16	[{'connected_gene': 'MAP3K4', 'score': 10.22}, {'connected_gene': 'AGPAT4', 'score': 9.88}, {'connected_gene': 'PIR49622', 'score': 0.28}, {'connected_gene': 'GC06P161252', 'score': 0.25}]
chr6	GH06I161315	161315369	161315491	0.86	[{'connected_gene': 'MAP3K4', 'score': 23.05}, {'connected_gene': 'LOC105378094', 'score': 0.34}, {'connected_gene': 'AGPAT4', 'score': 0.26}]
chr6	GH06I161313	161313629	161313778	0.43	[{'connected_gene': 'LOC105378094', 'score': 0.34}, {'connected_gene': 'AGPAT4', 'score': 0.28}]
chr6	GH06I161373	161373969	161374158	0.88	[{'connected_gene': 'ENSG00000272841', 'score': 12.24}, {'connected_gene': 'AGPAT4', 'score': 11.54}, {'connected_gene': 'GC06P161404', 'score': 0.29}, {'connected_gene': 'LOC105378094', 'score': 0.28}]
chr6	GH06I161136	161136061	161136999	0.89	[{'connected_gene': 'PIR57040', 'score': 550.77}, {'connected_gene': 'PIR37580', 'score': 550.77}, {'connected_gene': 'GC06M161137', 'score': 550.77}, {'connected_gene': 'PIR56804', 'score': 0.77}, {'connected_gene': 'AGPAT4', 'score': 0.12}]
chr6	GH06I161257	161257205	161258870	1.08	[{'connected_gene': 'GC06P161252', 'score': 0.44}, {'connected_gene': 'AGPAT4', 'score': 0.37}]
chr6	GH06I161260	161260796	161263258	0.74	[{'connected_gene': 'GC06P161252', 'score': 0.44}, {'connected_gene': 'AGPAT4', 'score': 0.39}]
chr6	GH06I161254	161254228	161256031	1.18	[{'connected_gene': 'GC06P161252', 'score': 0.77}, {'connected_gene': 'AGPAT4', 'score': 0.37}]
chr6	GH06I161235	161235676	161236766	0.67	[{'connected_gene': 'GC06P161252', 'score': 0.37}, {'connected_gene': 'AGPAT4', 'score': 0.28}, {'connected_gene': 'PIR49622', 'score': 0.2}]