PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
SMC3	16	SMARCA4	19	biochemical	Wan C (2015)	1
CDC5L	2	PRKDC	12	affinity chromatography technology, biochemical, affinity chromatography technology	Ajuh P (2000), Ajuh P (2000), Lleres D (2010)	3
FUBP3	0	PCBP1	2	biochemical	Wan C (2015)	1
XRCC6	3	YY1	7	affinity chromatography technology, affinity chromatography technology	Sucharov CC (2004), Sucharov CC (2004)	2
SMC3	16	NUMA1	10	affinity chromatography technology	Gregson HC (2001)	1
MATR3	2	HNRNPL	3	affinity chromatography technology	Hein MY (2015)	1
EHMT2	4	CBX3	1	pull down, imaging technique, unspecified method, x-ray crystallography, affinity chromatography technology, affinity chromatography technology	Chin HG (2007), Chin HG (2007), Ruan J (2012), Ruan J (2012), Roopra A (2004), Hauri S (2016)	6
MSH6	2	TOPBP1	5	affinity chromatography technology, affinity chromatography technology	Liu Y (2010), Liu Y (2010)	2
SMC1A	15	PRPF19	2	affinity chromatography technology	Hein MY (2015)	1
CDC5L	2	MDN1	19	affinity chromatography technology	Lleres D (2010)	1
CPSF1	6	GTF3C3	2	biochemical	Havugimana PC (2012)	1
MSH2	4	SUPT16H	4	biochemical	Havugimana PC (2012)	1
SF3B2	7	SNRPD3	0	biochemical	Havugimana PC (2012)	1
SF3B3	4	ZC3H18	4	biochemical	Havugimana PC (2012)	1
DHX9	3	XRCC5	5	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Q (2005), Zhang S (2004), Zhang S (2004), Zhang S (2004), Sand-Dejmek J (2011)	5
SMARCAD1	1	HNRNPK	4	affinity chromatography technology	Rowbotham SP (2011)	1
SMC1A	15	EHMT2	4	affinity chromatography technology, affinity chromatography technology	Fang R (2010), Fang R (2010)	2
U2AF2	7	TRIM28	1	affinity chromatography technology	Whisenant TC (2015)	1
CDC5L	2	CPSF2	2	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	SUPT16H	4	affinity chromatography technology, biochemical	Rowbotham SP (2011), Wan C (2015)	2
SRSF1	0	WDR18	2	biochemical	Havugimana PC (2012)	1
FOXL1	0	SYMPK	3	affinity chromatography technology	Li X (2015)	1
CSNK2A1	15	RING1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	So J (2015), Hauri S (2016), Hauri S (2016)	3
EHMT2	4	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Bantscheff M (2011)	2
NTRK1	1	EPHA2	3	affinity chromatography technology	Emdal KB (2015)	1
NUMA1	10	RUVBL1	2	biochemical	Wan C (2015)	1
DHX9	3	HNRNPR	3	biochemical	Wan C (2015)	1
ZNF324B	1	TRIM28	1	affinity chromatography technology	Huttlin EL (2017)	1
PBRM1	5	ACTL6A	4	affinity chromatography technology	Yan Z (2005)	1
CDC5L	2	TMPO	0	affinity chromatography technology	Lleres D (2010)	1
GTF3C1	11	GTF3C3	2	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
ANAPC5	2	CDC16	2	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	4
CDC5L	2	SMARCA4	19	affinity chromatography technology	Lleres D (2010)	1
SRSF1	0	U2AF2	7	two hybrid, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Rual JF (2005), Havugimana PC (2012), Whisenant TC (2015), Whisenant TC (2015), Huttlin EL (2017)	5
ANAPC1	1	ANAPC5	2	biochemical, biochemical, affinity chromatography technology, biochemical	Sumara I (2000), Havugimana PC (2012), Vodermaier HC (2003), Wan C (2015)	4
NTRK1	1	USP7	14	affinity chromatography technology	Emdal KB (2015)	1
DDX5	2	HNRNPK	4	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
U2AF2	7	DDX17	2	two hybrid, two hybrid, affinity chromatography technology	Hegele A (2012), Hegele A (2012), Whisenant TC (2015)	3
TMPO	0	DHX9	3	affinity chromatography technology	Brady GF (2018)	1
SNW1	0	HNRNPR	3	biochemical, affinity chromatography technology	Wan C (2015), Lleres D (2010)	2
XRCC5	5	TOP2A	2	affinity chromatography technology	Matheos D (2002)	1
CDC5L	2	ILF3	5	affinity chromatography technology	Lleres D (2010)	1
GTF3C4	0	GTF3C2	2	affinity chromatography technology, pull down, affinity chromatography technology, biochemical	Hsieh YJ (1999), Hsieh YJ (1999), Sinn E (1995), Havugimana PC (2012)	4
PTBP1	2	HNRNPL	3	two hybrid, two hybrid, two hybrid, pull down, pull down, pull down, biochemical, biochemical	Hahm B (1998), Kim JH (2000), Kim JH (2000), Kim JH (2000), Kim JH (2000), Hahm B (1998), Havugimana PC (2012), Wan C (2015)	8
DDX5	2	HNRNPM	1	biochemical	Havugimana PC (2012)	1
SUPT16H	4	ZC3H18	4	biochemical	Wan C (2015)	1
SMARCAD1	1	DMAP1	2	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPR	3	SRSF1	0	biochemical	Havugimana PC (2012)	1
CSNK2A1	15	PRKDC	12	affinity chromatography technology, imaging technique, affinity chromatography technology	Olsen BB (2012), Olsen BB (2012), Olsen BB (2012)	3
CDC5L	2	CDC16	2	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	HNRNPM	1	affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe, pull down, affinity chromatography technology	Lleres D (2010), Lleres D (2010), Lleres D (2010), Lleres D (2010), Lleres D (2010)	5
CDC5L	2	ZC3H18	4	biochemical	Havugimana PC (2012)	1
CPSF2	2	CPSF3	5	biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Kolev NG (2008), Kolev NG (2008), Wan C (2015), Hein MY (2015)	5
HNRNPK	4	HNRNPM	1	biochemical	Havugimana PC (2012)	1
MATR3	2	RUVBL1	2	biochemical	Wan C (2015)	1
SMARCA4	19	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, genetic interference	Sif S (2001), Qiu Z (2008), Xu Z (2006), Pal S (2003), Battaglioli E (2002), Tando T (2010), Hang CT (2010), Shen JP (2017)	8
HDAC1	4	TOP2A	2	affinity chromatography technology, affinity chromatography technology, pull down, pull down, two hybrid	Tsai SC (2000), Johnson CA (2001), Johnson CA (2001), Johnson CA (2001), Johnson CA (2001)	5
SNW1	0	HNRNPU	12	affinity chromatography technology, affinity chromatography technology	Zhang C (2003), Lleres D (2010)	2
CDC27	2	CDC23	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vodermaier HC (2003), Gmachl M (2000), Kraft C (2003), Lara-Gonzalez P (2011), Tran K (2008), Dube P (2005), Fehr AR (2012), Holzmann J (2011), Lee SJ (2012), Hayes MJ (2006), Havugimana PC (2012), Vodermaier HC (2003), Tran K (2010), Wan C (2015), Hein MY (2015), Qiao R (2016), Qiao R (2016), Boldt K (2016)	18
SMARCAD1	1	XRCC6	3	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPL	3	EHMT1	18	affinity chromatography technology	Fei T (2017)	1
DNAJA2	2	SMC3	16	biochemical	Wan C (2015)	1
MTA2	1	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Zhang Y (1998), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Quan J (2014), Wan C (2015)	8
RUVBL2	4	TRIM28	1	affinity chromatography technology	Jeronimo C (2007)	1
U2AF2	7	PTBP1	2	affinity chromatography technology	Whisenant TC (2015)	1
SMARCAD1	1	RFC2	0	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	DDX19A	0	affinity chromatography technology	Rowbotham SP (2011)	1
MATR3	2	DDX3X	52	affinity chromatography technology	Hein MY (2015)	1
YY1	7	PRKDC	12	biochemical	Wu S (2007)	1
HNRNPH1	3	U2AF2	7	biochemical, affinity chromatography technology	Havugimana PC (2012), Whisenant TC (2015)	2
CDC27	2	ANAPC5	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vodermaier HC (2003), Koloteva-Levine N (2004), Gmachl M (2000), Kraft C (2003), Lara-Gonzalez P (2011), Dube P (2005), Fehr AR (2012), Holzmann J (2011), Havugimana PC (2012), Song MS (2011), Vodermaier HC (2003), Tran K (2010), Kelly A (2014), Craney A (2016), Qiao R (2016)	15
MATR3	2	HNRNPR	3	affinity chromatography technology	Hein MY (2015)	1
SMARCAD1	1	ZNF302	0	affinity chromatography technology	Rowbotham SP (2011)	1
SNW1	0	CPSF2	2	affinity chromatography technology	Lleres D (2010)	1
SNW1	0	NONO	3	affinity chromatography technology	Lleres D (2010)	1
EHMT2	4	RUVBL1	2	affinity chromatography technology	Hauri S (2016)	1
SMARCAD1	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Rowbotham SP (2011), Rowbotham SP (2011)	2
SMARCAD1	1	DNAJA2	2	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPH1	3	HNRNPM	1	affinity chromatography technology	Jeronimo C (2007)	1
SIN3A	13	SMARCC1	5	pull down, affinity chromatography technology, affinity chromatography technology	Sif S (2001), Kuzmichev A (2002), Nakamura T (2002)	3
NTRK1	1	RFC4	1	affinity chromatography technology	Emdal KB (2015)	1
ANAPC2	0	ANAPC7	2	biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Gmachl M (2000), Vodermaier HC (2003)	3
CPSF2	2	SMARCA4	19	biochemical	Havugimana PC (2012)	1
GTF3C1	11	GTF3C5	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
SMARCAD1	1	ZNF8	2	affinity chromatography technology	Rowbotham SP (2011)	1
PARP1	3	XRCC5	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, enzymatic study, pull down, pull down, affinity chromatography technology, affinity chromatography technology	Ju BG (2006), Galande S (1999), Galande S (1999), Galande S (1999), Idogawa M (2007), Li B (2004), Li B (2004), Yin H (2006), Yin H (2006), Sand-Dejmek J (2011), Wu T (2013)	11
SMARCB1	1	SMARCC2	9	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Wang W (1996), Ryme J (2009), Kaeser MD (2008), Kaeser MD (2008), Medjkane S (2004), Mak AB (2010), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	9
NTRK1	1	ACTL6A	4	affinity chromatography technology	Emdal KB (2015)	1
TRIM28	1	SIN3A	13	pull down	Nomura T (2004)	1
HNRNPR	3	DDX5	2	biochemical	Wan C (2015)	1
SNW1	0	XRCC6	3	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	CHD4	22	affinity chromatography technology	Emdal KB (2015)	1
HNRNPK	4	HNRNPU	12	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
ZNF785	0	RBAK	3	affinity chromatography technology	Huttlin EL (2017)	1
GTF3C3	2	GTF3C5	4	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
HNRNPR	3	RAD50	3	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	MTA3	3	affinity chromatography technology	Rowbotham SP (2011)	1
ZNF550	3	ZNF460	4	affinity chromatography technology	Huttlin EL (2017)	1
ZC3H18	4	SNW1	0	affinity chromatography technology	Huttlin EL (2017)	1
RUVBL1	2	ACTL6A	4	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Park J (2002), Park J (2002), Cai Y (2007), Havugimana PC (2012), Huttlin EL (2017), Cloutier P (2017)	6
SNW1	0	WIZ	2	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	HNRNPU	12	affinity chromatography technology	Lleres D (2010)	1
HNRNPK	4	XRCC6	3	biochemical	Wan C (2015)	1
TOPBP1	5	SMARCAD1	1	two hybrid, pull down	Bantele SC (2017), Bantele SC (2017)	2
NTRK1	1	GNE	2	affinity chromatography technology	Emdal KB (2015)	1
RUVBL2	4	HNRNPU	12	affinity chromatography technology	Jeronimo C (2007)	1
CPSF1	6	CPSF3	5	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015)	3
DHX9	3	HNRNPM	1	biochemical	Kristensen AR (2012)	1
CDC5L	2	SYMPK	3	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	SRSF1	0	affinity chromatography technology	Rowbotham SP (2011)	1
CDC5L	2	HELLS	1	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	KHDRBS1	1	affinity chromatography technology	Lleres D (2010)	1
SMARCA4	19	SMARCC1	5	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Sif S (2001), Wang W (1996), Otsuki T (2001), Zhao K (1998), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Inayoshi Y (2006), Inayoshi Y (2006), Pal S (2003), Pal S (2003), Bultman SJ (2005), Nagl NG (2005), Mahajan MC (2005), Trotter KW (2008), Dallas PB (1998), Tando T (2010), Tando T (2010), Bartlett C (2011), Bartlett C (2011), Oh J (2008), Oh J (2008), Havugimana PC (2012), Wan C (2015)	25
ZNF669	0	TRIM28	1	affinity chromatography technology	Huttlin EL (2017)	1
NTRK1	1	PCBP1	2	affinity chromatography technology	Emdal KB (2015)	1
ZNF211	0	ZNF460	4	affinity chromatography technology	Hauri S (2016)	1
SMARCAD1	1	RUVBL1	2	affinity chromatography technology	Rowbotham SP (2011)	1
HDAC2	1	HELLS	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhou R (2009), Zhou R (2009), Myant K (2008)	3
HDAC1	4	SMARCC1	5	biochemical	Havugimana PC (2012)	1
HNRNPM	1	U2AF2	7	biochemical, fluorescent resonance energy transfe, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Lleres D (2010), Lleres D (2010), Whisenant TC (2015)	4
SMARCC1	5	PBRM1	5	affinity chromatography technology, affinity chromatography technology	Ryme J (2009), Yan Z (2005)	2
HNRNPD	3	MTA2	1	affinity chromatography technology, pull down	Lee C (2008), Lee C (2008)	2
SMARCAD1	1	NONO	3	affinity chromatography technology	Rowbotham SP (2011)	1
NTRK1	1	LMNB1	1	affinity chromatography technology	Emdal KB (2015)	1
TOP2A	2	SSRP1	1	biochemical	Wan C (2015)	1
RFC3	0	RFC5	2	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	3
CDC27	2	ANAPC2	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kraft C (2003), Lara-Gonzalez P (2011), Dube P (2005), Dube P (2005), Holzmann J (2011), Lee SJ (2012), Hayes MJ (2006), Havugimana PC (2012), Gmachl M (2000), Cotto-Rios XM (2011), Vodermaier HC (2003), Vodermaier HC (2003), Vodermaier HC (2003), Gmachl M (2000), Kelly A (2014), Craney A (2016), Qiao R (2016)	17
NTRK1	1	CPSF1	6	affinity chromatography technology	Emdal KB (2015)	1
DMAP1	2	PCNA	0	affinity chromatography technology	Negishi M (2009)	1
FOXL1	0	SMC1A	15	affinity chromatography technology	Li X (2015)	1
DMAP1	2	HDAC1	4	pull down, affinity chromatography technology, affinity chromatography technology	Kang BG (2007), Kang BG (2007), Kang BG (2007)	3
CDC16	2	ANAPC7	2	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hutchins JR (2010), Havugimana PC (2012), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	5
RUVBL1	2	PCBP1	2	affinity chromatography technology	Jeronimo C (2007)	1
ZNF785	0	ZNF460	4	affinity chromatography technology	Huttlin EL (2017)	1
NTRK1	1	NUMA1	10	affinity chromatography technology	Emdal KB (2015)	1
XRCC5	5	YY1	7	affinity chromatography technology, affinity chromatography technology	Sucharov CC (2004), Sucharov CC (2004)	2
RUVBL2	4	CHD4	22	affinity chromatography technology	Cloutier P (2017)	1
SNW1	0	SYMPK	3	affinity chromatography technology	Lleres D (2010)	1
EHMT2	4	EHMT1	18	affinity chromatography technology, affinity chromatography technology	Bantscheff M (2011), Hauri S (2016)	2
HNRNPR	3	SMARCA5	4	biochemical	Havugimana PC (2012)	1
L3MBTL2	1	E2F6	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Trojer P (2011), Trojer P (2011), Huttlin EL (2015), Huttlin EL (2017), Hauri S (2016), Hauri S (2016)	6
XRCC5	5	TMPO	0	affinity chromatography technology, affinity chromatography technology	Sand-Dejmek J (2011), Brady GF (2018)	2
NTRK1	1	MSH3	4	affinity chromatography technology	Emdal KB (2015)	1
CDC27	2	ANAPC1	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Vodermaier HC (2003), Sumara I (2000), Lara-Gonzalez P (2011), Tran K (2008), Dube P (2005), Holzmann J (2011), Havugimana PC (2012), Vodermaier HC (2003), Tran K (2010), Wan C (2015), Qiao R (2016), Qiao R (2016)	12
SNW1	0	CDC5L	2	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Zhang C (2003), Wan C (2015), Lleres D (2010), Lleres D (2010)	4
PCNA	0	DHX9	3	affinity chromatography technology	Takasaki Y (2001)	1
SNW1	0	CHD4	22	affinity chromatography technology	Lleres D (2010)	1
HDAC2	1	ACTL6A	4	affinity chromatography technology	Joshi P (2013)	1
NTRK1	1	TMPO	0	affinity chromatography technology	Emdal KB (2015)	1
HNRNPU	12	RFC3	0	affinity chromatography technology	Hein MY (2015)	1
LMNB1	1	SF3B3	4	biochemical	Wan C (2015)	1
HDAC1	4	SIN3A	13	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Zhang Y (2003), Yao YL (2003), Yao YL (2003), Fleischer TC (2003), Fleischer TC (2003), Yang L (2003), Grozinger CM (1999), Zhang J (2002), Zhang J (2002), You A (2001), Zhang Y (1999), Zhang Y (2002), Tong JK (1998), Hassig CA (1998), Yasui D (2002), Huang EY (2000), Huang EY (2000), Kuzmichev A (2002), Kuzmichev A (2002), Martinowich K (2003), Martinowich K (2003), Suzuki M (2003), Suzuki M (2006), Nakamura T (2002), Wei Q (2005), Pflum MK (2001), Pflum MK (2001), Skowyra D (2001), Skowyra D (2001), Humphrey GW (2001), Sekhavat A (2007), Zhang Y (1998), Zhang Y (1998), Sun JM (2007), Karwowska-Desaulniers P (2007), Terhune SS (2010), Xue Y (1998), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Oh YM (2009), Wan C (2015), Hein MY (2015), Hsu DS (2014), Huttlin EL (2017)	45
HDAC1	4	TRIM28	1	affinity chromatography technology, affinity chromatography technology, biochemical	Allouch A (2011), Chen L (2012), Kristensen AR (2012)	3
SMARCAD1	1	ARID2	5	affinity chromatography technology	Rowbotham SP (2011)	1
PRPF19	2	SF3B3	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
DHX9	3	ILF3	5	biochemical, affinity chromatography technology	Havugimana PC (2012), Chu L (2012)	2
SNW1	0	RAD50	3	affinity chromatography technology	Lleres D (2010)	1
DDX17	2	SRSF1	0	biochemical	Havugimana PC (2012)	1
RING1	2	YY1	7	affinity chromatography technology	Lorente M (2006)	1
TMPO	0	HNRNPU	12	affinity chromatography technology	Brady GF (2018)	1
SNW1	0	SF3B2	7	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	SMC3	16	affinity chromatography technology	Rowbotham SP (2011)	1
SNW1	0	RUVBL2	4	affinity chromatography technology	Lleres D (2010)	1
ZNF214	1	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPR	3	MTA2	1	biochemical	Kristensen AR (2012)	1
ZNF816	0	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
EHMT2	4	WIZ	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ueda J (2006), Ueda J (2006), Bantscheff M (2011), Hein MY (2015), Hauri S (2016)	5
SNW1	0	PCBP1	2	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	HNRNPL	3	affinity chromatography technology	Emdal KB (2015)	1
XRCC6	3	MSH2	4	affinity chromatography technology, biochemical	Shahi A (2011), Kristensen AR (2012)	2
NONO	3	HDAC2	1	affinity chromatography technology	Zhang C (2008)	1
NTRK1	1	SMC1A	15	affinity chromatography technology	Emdal KB (2015)	1
TMPO	0	HNRNPK	4	affinity chromatography technology	Brady GF (2018)	1
DDX17	2	DHX9	3	biochemical	Havugimana PC (2012)	1
NTRK1	1	SMC3	16	affinity chromatography technology	Emdal KB (2015)	1
CPSF2	2	GTF3C3	2	biochemical	Havugimana PC (2012)	1
NTRK1	1	SYMPK	3	affinity chromatography technology	Emdal KB (2015)	1
ARID2	5	SMARCC1	5	affinity chromatography technology	Yan Z (2005)	1
CHD4	22	MTA3	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Kwintkiewicz J (2011), Kwintkiewicz J (2011), Bantscheff M (2011), Wan C (2015)	4
SMARCAD1	1	CPSF2	2	affinity chromatography technology	Rowbotham SP (2011)	1
CSNK2A1	15	SMARCC2	9	enzymatic study	Zhang M (2011)	1
NTRK1	1	U2AF2	7	affinity chromatography technology	Emdal KB (2015)	1
HDAC2	1	EHMT1	18	affinity chromatography technology	Bantscheff M (2011)	1
SMARCAD1	1	WIZ	2	affinity chromatography technology	Rowbotham SP (2011)	1
XRCC5	5	PCNA	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Matheos D (2002), Ohta S (2002), Balajee AS (2001)	3
SF3B3	4	WDR18	2	biochemical	Havugimana PC (2012)	1
PCNA	0	RUVBL2	4	affinity chromatography technology	Ohta S (2002)	1
SMARCAD1	1	RAD50	3	affinity chromatography technology	Rowbotham SP (2011)	1
CPSF3	5	SYMPK	3	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Kolev NG (2008), Wan C (2015), Hein MY (2015), Hein MY (2015)	4
HNRNPL	3	GTF3C1	11	affinity chromatography technology	Fei T (2017)	1
PBRM1	5	SMARCB1	1	affinity chromatography technology	Yan Z (2005)	1
SNW1	0	MDN1	19	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	HNRNPH1	3	affinity chromatography technology	Lleres D (2010)	1
U2AF2	7	KHDRBS1	1	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology	Hegele A (2012), Hegele A (2012), Whisenant TC (2015), Whisenant TC (2015)	4
HNRNPU	12	WDR18	2	biochemical	Havugimana PC (2012)	1
ZNF211	0	TRIM28	1	affinity chromatography technology	Hauri S (2016)	1
SMARCA4	19	CHD4	22	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Shimono Y (2003), Shimono Y (2003), Shimono Y (2003), Mahajan MC (2005), Mahajan MC (2005), ONeill DW (2000)	6
U2AF2	7	ANP32A	3	affinity chromatography technology	Whisenant TC (2015)	1
HDAC1	4	HDAC2	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, imaging technique, affinity chromatography technology	Hakimi MA (2002), Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Fischle W (2002), Johnson CA (2002), Fischle W (2001), Fischer DD (2002), Fischer DD (2002), Ashburner BP (2001), Zhang Y (1999), Tong JK (1998), Tong JK (1998), Hassig CA (1998), Hassig CA (1998), Zhang Y (1997), van der Vlag J (1999), van der Vlag J (1999), Noh EJ (2009), Noh EJ (2009), Galasinski SC (2002), Galasinski SC (2002), Galasinski SC (2002), He S (2005), Humphrey GW (2001), Park JH (2004), Park JH (2004), Sekhavat A (2007), Zhang Y (1998), Zhang Y (1998), Adenuga D (2010), Xue Y (1998), Xue Y (1998), Martinez FP (2012), Martinez FP (2012), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Joshi P (2013), Schnur N (2007), Schnur N (2007), Oh YM (2009), Wan C (2015), Hein MY (2015), Chen TC (2014), Huttlin EL (2017)	48
SNW1	0	CPSF1	6	affinity chromatography technology	Lleres D (2010)	1
NONO	3	SIN3A	13	affinity chromatography technology	Liu L (2011)	1
NTRK1	1	RUVBL1	2	affinity chromatography technology	Emdal KB (2015)	1
ZNF324B	1	ZNF689	0	affinity chromatography technology	Huttlin EL (2017)	1
MSH2	4	MSH3	4	affinity chromatography technology, pull down, pull down, pull down, pull down, affinity chromatography technology, biochemical, pull down	Wang Y (2003), Guerrette S (1998), Bocker T (1999), Bocker T (1999), Acharya S (1996), Palombo F (1996), Havugimana PC (2012), Owen BA (2009)	8
MATR3	2	DDX5	2	affinity chromatography technology	Hein MY (2015)	1
SMARCAD1	1	POLR1E	3	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	PCBP1	2	affinity chromatography technology	Rowbotham SP (2011)	1
HDAC1	4	DDX17	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wilson BJ (2004), Wilson BJ (2004), Mooney SM (2010), Mooney SM (2010)	4
SNW1	0	ANAPC1	1	affinity chromatography technology	Lleres D (2010)	1
FOXL1	0	HELLS	1	affinity chromatography technology	Li X (2015)	1
ZNF764	2	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	BEND3	4	affinity chromatography technology	Joshi P (2013)	1
MATR3	2	NUMA1	10	affinity chromatography technology	Hein MY (2015)	1
SMARCD2	1	ACTL6A	4	biochemical	Wan C (2015)	1
CSNK2A1	15	HDAC2	1	enzymatic study, affinity chromatography technology, affinity chromatography technology, enzymatic study, biochemical, enzymatic study, biochemical	Sun JM (2002), Sun JM (2007), Adenuga D (2010), Tsai SC (2002), Havugimana PC (2012), Zhang M (2011), Wan C (2015)	7
PRKDC	12	XRCC6	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, enzymatic study, affinity chromatography technology	Shao RG (1999), Drouet J (2005), Gottlieb TM (1993), Shamanna RA (2011), Shamanna RA (2011), Havugimana PC (2012), Sartorius CA (2000), Sartorius CA (2000), Hein MY (2015)	9
RUVBL2	4	ACTL6A	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Cai Y (2007), Cloutier P (2017), Cheng J (2017)	4
SMARCE1	1	ACTL6A	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Zhao K (1998), Kaeser MD (2008), Mak AB (2010), Havugimana PC (2012)	4
ZNF785	0	TRIM28	1	affinity chromatography technology	Huttlin EL (2017)	1
SF3B2	7	SF3B3	4	affinity chromatography technology, biochemical, biochemical	Das BK (1999), Havugimana PC (2012), Wan C (2015)	3
DHX9	3	USP7	14	biochemical	Wan C (2015)	1
NTRK1	1	KDM1A	2	affinity chromatography technology	Emdal KB (2015)	1
HNRNPK	4	DHX9	3	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
PBRM1	5	ARID2	5	affinity chromatography technology, affinity chromatography technology, biochemical	Yan Z (2005), Yan Z (2005), Wan C (2015)	3
KHDRBS1	1	HNRNPK	4	two hybrid, pull down, affinity chromatography technology, pull down, genetic interference, genetic interference, two hybrid, two hybrid, two hybrid	Yang JP (2002), Yang JP (2002), Yang JP (2002), Yang JP (2002), Yang JP (2002), Yang JP (2002), Hegele A (2012), Hegele A (2012), Wang J (2011)	9
PARP1	3	SUPT16H	4	enzymatic study	Huang JY (2006)	1
ANAPC1	1	CDC23	3	biochemical, biochemical, affinity chromatography technology	Sumara I (2000), Havugimana PC (2012), Hein MY (2015)	3
SMARCAD1	1	CPSF1	6	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	ZNF566	1	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCC2	9	SMARCC1	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Ryme J (2009), Ryme J (2009), Kaeser MD (2008), Kaeser MD (2008), Nagl NG (2005), Mak AB (2010), Havugimana PC (2012), Wan C (2015), Dallas PB (1998), Huttlin EL (2017)	10
PRKDC	12	SMARCA5	4	biochemical	Havugimana PC (2012)	1
NTRK1	1	PRKDC	12	affinity chromatography technology	Emdal KB (2015)	1
RUVBL2	4	USP7	14	affinity chromatography technology	Ewing RM (2007)	1
LAS1L	3	WDR18	2	affinity chromatography technology, biochemical	Castle CD (2012), Wan C (2015)	2
SMARCAD1	1	MATR3	2	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPL	3	XRCC5	5	affinity chromatography technology	Fei T (2017)	1
CDC5L	2	ANAPC7	2	affinity chromatography technology	Lleres D (2010)	1
NONO	3	U2AF2	7	affinity chromatography technology, biochemical, affinity chromatography technology	Liu L (2011), Wan C (2015), Whisenant TC (2015)	3
CDC5L	2	DDX19A	0	affinity chromatography technology	Lleres D (2010)	1
SNW1	0	MSH6	2	affinity chromatography technology	Lleres D (2010)	1
DDX5	2	U2AF2	7	biochemical, affinity chromatography technology	Havugimana PC (2012), Whisenant TC (2015)	2
MSH2	4	SMARCA5	4	biochemical	Havugimana PC (2012)	1
PCNA	0	RFC4	1	pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Cai J (1997), Ohta S (2002), Ohta S (2002), Havugimana PC (2012), Han J (2014), Hein MY (2015)	6
NTRK1	1	KHDRBS1	1	affinity chromatography technology	Emdal KB (2015)	1
PCBP1	2	HNRNPK	4	two hybrid	Lim J (2006)	1
MSH2	4	MSH6	2	biochemical, affinity chromatography technology, pull down, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, pull down, biochemical, affinity chromatography technology, imaging technique	Wang Y (2000), Wang Y (2003), Guerrette S (1998), Bocker T (1999), Bocker T (1999), Acharya S (1996), Matton N (2000), Matton N (2000), Yang Q (2004), Havugimana PC (2012), Gradia S (1997), Owen BA (2009), Wan C (2015), Hein MY (2015), Chen TC (2014)	15
CBX3	1	HDAC2	1	affinity chromatography technology	Hauri S (2016)	1
SMARCC2	9	ACTL6A	4	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Mak AB (2010), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	4
SNW1	0	RFC5	2	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	RAB3GAP2	7	affinity chromatography technology	Emdal KB (2015)	1
CDC16	2	CDC23	3	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	6
NTRK1	1	GTF3C4	0	affinity chromatography technology	Emdal KB (2015)	1
HNRNPM	1	GTF3C1	11	biochemical	Havugimana PC (2012)	1
DDX3X	52	HNRNPR	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
LAS1L	3	PELP1	3	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Kashiwaya K (2010), Kashiwaya K (2010), Havugimana PC (2012), Castle CD (2012), Castle CD (2012), Castle CD (2012), Castle CD (2012), Wan C (2015)	8
NTRK1	1	CDC5L	2	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	ANAPC2	0	affinity chromatography technology	Rowbotham SP (2011)	1
NTRK1	1	GTF3C5	4	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	ILF3	5	affinity chromatography technology	Emdal KB (2015)	1
PARP1	3	HNRNPH1	3	affinity chromatography technology	Wu T (2013)	1
NTRK1	1	SMARCAD1	1	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	LAS1L	3	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	PELP1	3	affinity chromatography technology	Rowbotham SP (2011)	1
ARID2	5	SMARCA4	19	affinity chromatography technology, affinity chromatography technology	Yan Z (2005), Yan Z (2005)	2
NTRK1	1	SMARCA5	4	affinity chromatography technology	Emdal KB (2015)	1
CDC16	2	XRCC5	5	two hybrid	Wang J (2011)	1
HNRNPH1	3	HNRNPU	12	affinity chromatography technology	Jeronimo C (2007)	1
TMPO	0	PRKDC	12	affinity chromatography technology	Brady GF (2018)	1
DHX9	3	HNRNPU	12	affinity chromatography technology, biochemical, affinity chromatography technology	Chu L (2012), Kristensen AR (2012), Hein MY (2015)	3
CBX3	1	ZNF8	2	affinity chromatography technology	Rosnoblet C (2011)	1
ZNF562	1	SMARCAD1	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
ZNF785	0	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
CBX3	1	RING1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ogawa H (2002), Hauri S (2016), Hauri S (2016)	3
SMARCAD1	1	BAZ1A	5	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPU	12	ZC3H18	4	biochemical	Havugimana PC (2012)	1
TRIM28	1	PARP1	3	affinity chromatography technology	Quenet D (2008)	1
CDC5L	2	PTBP1	2	affinity chromatography technology	Lleres D (2010)	1
PBRM1	5	GTF3C5	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
SMARCA4	19	TOPBP1	5	affinity chromatography technology	Cohen SM (2010)	1
ILF3	5	TMPO	0	biochemical, affinity chromatography technology	Havugimana PC (2012), Brady GF (2018)	2
CDC5L	2	SNRPD3	0	affinity chromatography technology, biochemical, affinity chromatography technology	Ajuh P (2000), Ajuh P (2000), Lleres D (2010)	3
HNRNPU	12	RFC4	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Hein MY (2015)	3
SMARCAD1	1	CDC27	2	affinity chromatography technology	Rowbotham SP (2011)	1
SIN3A	13	SMARCE1	1	pull down	Pal S (2003)	1
ANAPC1	1	ANAPC2	0	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Sumara I (2000), Havugimana PC (2012), Gmachl M (2000), Vodermaier HC (2003)	4
HNRNPU	12	GTF3C1	11	biochemical	Havugimana PC (2012)	1
TRIM28	1	ZNF460	4	affinity chromatography technology	Huttlin EL (2017)	1
CDC5L	2	RUVBL1	2	affinity chromatography technology	Lleres D (2010)	1
SSRP1	1	SUPT16H	4	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Birch JL (2009), Tan BC (2006), Tan BC (2006), Pavri R (2006), Huang JY (2006), Huang JY (2006), OConnell BC (2010), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017), Boldt K (2016)	12
HNRNPU	12	SUPT16H	4	affinity chromatography technology	Hein MY (2015)	1
DOK4	3	KDM1A	2	affinity chromatography technology	Huttlin EL (2015)	1
HNRNPD	3	HNRNPL	3	biochemical	Havugimana PC (2012)	1
ZNF785	0	GTF3C4	0	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	KDM1A	2	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hakimi MA (2002), Hakimi MA (2003), You A (2001), You A (2001), Shi YJ (2005), Lee MG (2005), Humphrey GW (2001), Humphrey GW (2001), Humphrey GW (2001), Godmann M (2007), Godmann M (2007), Terhune SS (2010), Godmann M (2010), Godmann M (2010), Wang Y (2009), Nicholson TB (2011), Li Q (2011), Cui S (2011), Cui S (2011), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Wang Q (2016), Huttlin EL (2017)	26
NTRK1	1	DDX5	2	affinity chromatography technology	Emdal KB (2015)	1
DDX17	2	SMARCC2	9	biochemical	Wan C (2015)	1
E2F6	2	HDAC2	1	affinity chromatography technology	Hauri S (2016)	1
HDAC2	1	TOP2A	2	affinity chromatography technology	Tsai SC (2000)	1
SNW1	0	SNRPD3	0	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	GTF3C1	11	affinity chromatography technology	Emdal KB (2015)	1
MSH6	2	SMC1A	15	pull down	Wang Y (2003)	1
SMARCAD1	1	WDR33	3	affinity chromatography technology	Rowbotham SP (2011)	1
BEND3	4	SMARCA5	4	affinity chromatography technology, affinity chromatography technology	Khan A (2015), Khan A (2015)	2
HNRNPM	1	NONO	3	biochemical	Havugimana PC (2012)	1
SF3B3	4	SNRPD3	0	biochemical	Wan C (2015)	1
SMARCAD1	1	ZC3H18	4	affinity chromatography technology	Rowbotham SP (2011)	1
DDX5	2	PRKDC	12	biochemical	Havugimana PC (2012)	1
CHD4	22	SIN3A	13	affinity chromatography technology	Zhang Y (1998)	1
SMARCAD1	1	MSH2	4	affinity chromatography technology	Rowbotham SP (2011)	1
CBX3	1	CHD4	22	affinity chromatography technology, affinity chromatography technology	Rosnoblet C (2011), Hauri S (2016)	2
KDM1A	2	SIN3A	13	affinity chromatography technology	You A (2001)	1
MATR3	2	PTBP1	2	affinity chromatography technology	Hein MY (2015)	1
HNRNPU	12	HNRNPL	3	affinity chromatography technology	Hein MY (2015)	1
HNRNPU	12	U2AF2	7	biochemical, affinity chromatography technology	Havugimana PC (2012), Whisenant TC (2015)	2
SNW1	0	CPSF3	5	affinity chromatography technology	Lleres D (2010)	1
TMPO	0	RUVBL1	2	affinity chromatography technology	Brady GF (2018)	1
MTA3	3	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Fujita N (2003), Kwintkiewicz J (2011), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	8
HNRNPU	12	RFC5	2	affinity chromatography technology	Hein MY (2015)	1
HNRNPU	12	SMARCA5	4	affinity chromatography technology	Hein MY (2015)	1
RUVBL2	4	RFC4	1	affinity chromatography technology	Jeronimo C (2007)	1
CDC5L	2	U2AF2	7	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	David CJ (2011), David CJ (2011), Havugimana PC (2012), Lleres D (2010), Whisenant TC (2015)	5
ZNF324B	1	ZNF460	4	affinity chromatography technology	Huttlin EL (2017)	1
NTRK1	1	ANP32A	3	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	HNRNPD	3	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	SYMPK	3	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	GTF3C3	2	affinity chromatography technology	Rowbotham SP (2011)	1
CBX3	1	TRIM28	1	affinity chromatography technology, two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Nielsen AL (2001), Bandyopadhyay S (2010), Ryan RF (1999), Higo S (2010), Rosnoblet C (2011), Vermeulen M (2010), Hauri S (2016)	7
CEP19	0	MSH2	4	bioid	Gupta GD (2015)	1
HDAC2	1	SNW1	0	two hybrid, two hybrid	Zhou S (2000), Zhou S (2000)	2
ZC3H18	4	SRSF1	0	affinity chromatography technology	Huttlin EL (2017)	1
ZNF764	2	GTF3C2	2	affinity chromatography technology	Huttlin EL (2017)	1
DDX5	2	PRPF19	2	biochemical	Havugimana PC (2012)	1
CPSF2	2	WDR33	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PCNA	0	XRCC6	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, fluorescent resonance energy transfe	Ohta S (2002), Ohta S (2002), Balajee AS (2001), Nicolae CM (2014)	4
SSRP1	1	ANP32A	3	biochemical	Wan C (2015)	1
ZC3H18	4	WDR33	3	affinity chromatography technology	Huttlin EL (2017)	1
SMC1A	15	KIF13A	3	biochemical	Kristensen AR (2012)	1
SNW1	0	SMC1A	15	affinity chromatography technology	Lleres D (2010)	1
HNRNPU	12	HNRNPR	3	affinity chromatography technology	Hein MY (2015)	1
ANAPC1	1	ANAPC7	2	biochemical, biochemical, biochemical	Sumara I (2000), Havugimana PC (2012), Wan C (2015)	3
CEP19	0	GTF3C3	2	bioid	Gupta GD (2015)	1
CDC5L	2	PRPF19	2	affinity chromatography technology, biochemical, pull down, affinity chromatography technology, far western blotting, far western blotting, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Ajuh P (2000), Ajuh P (2000), Song EJ (2010), Lu X (2007), Grote M (2010), Grote M (2010), Havugimana PC (2012), Wan C (2015), Lleres D (2010), Huttlin EL (2017)	10
CSNK2A1	15	SSRP1	1	biochemical, enzymatic study, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Zhang M (2011), So J (2015), Wan C (2015), Huttlin EL (2017)	5
CDC5L	2	DDX17	2	affinity chromatography technology	Lleres D (2010)	1
DDX5	2	DHX9	3	two hybrid, two hybrid, biochemical	Hegele A (2012), Hegele A (2012), Wan C (2015)	3
XRCC5	5	SMARCA5	4	affinity chromatography technology	Lan L (2010)	1
SF3B3	4	SMC3	16	biochemical	Wan C (2015)	1
ZC3H18	4	U2AF2	7	affinity chromatography technology	Huttlin EL (2017)	1
RUVBL1	2	SMARCA5	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
HNRNPK	4	HNRNPL	3	two hybrid, two hybrid, pull down, pull down, biochemical, biochemical	Kim JH (2000), Kim JH (2000), Kim JH (2000), Kim JH (2000), Havugimana PC (2012), Wan C (2015)	6
HNRNPD	3	HNRNPR	3	biochemical	Havugimana PC (2012)	1
HDAC1	4	L3MBTL2	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2017), Hauri S (2016)	2
XRCC5	5	PRKDC	12	pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, imaging technique, affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, biochemical, affinity chromatography technology	Jin S (1997), Matheos D (2002), Gell D (1999), Drouet J (2005), Falck J (2005), Falck J (2005), Falck J (2005), Olsen BB (2012), Olsen BB (2012), Sand-Dejmek J (2011), Sartorius CA (2000), Sartorius CA (2000), Drouet J (2006), Drouet J (2006), Sibanda BL (2010), Wan C (2015), Hein MY (2015)	17
CDC5L	2	SMC1A	15	affinity chromatography technology	Lleres D (2010)	1
PELP1	3	WDR18	2	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Castle CD (2012), Castle CD (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
CDC5L	2	SRSF1	0	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Ajuh P (2000), Ajuh P (2000), Havugimana PC (2012), Lleres D (2010)	4
NTRK1	1	SNW1	0	affinity chromatography technology	Emdal KB (2015)	1
CDC27	2	GTF3C3	2	genetic interference	Horlbeck MA (2018)	1
YY1	7	DDX3X	52	affinity chromatography technology	Vella P (2011)	1
HDAC1	4	EHMT1	18	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
GTF3C2	2	GTF3C3	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Hsieh YJ (1999), Hsieh YJ (1999), Sinn E (1995), Havugimana PC (2012), Huttlin EL (2017)	5
ANAPC2	0	CDC23	3	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Gmachl M (2000), Vodermaier HC (2003), Hein MY (2015)	4
NTRK1	1	LAS1L	3	affinity chromatography technology	Emdal KB (2015)	1
HNRNPU	12	PTBP1	2	biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012)	2
CDC5L	2	RAD50	3	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	SUPT16H	4	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	RUVBL2	4	affinity chromatography technology	Emdal KB (2015)	1
U2AF2	7	PCNA	0	affinity chromatography technology	Whisenant TC (2015)	1
SNW1	0	CDC27	2	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	RUVBL2	4	affinity chromatography technology	Lleres D (2010)	1
HNRNPH1	3	HNRNPK	4	affinity chromatography technology	Jeronimo C (2007)	1
TMPO	0	PARP1	3	affinity chromatography technology	Brady GF (2018)	1
SMARCAD1	1	ZNF829	0	affinity chromatography technology	Rowbotham SP (2011)	1
CSNK2A1	15	SF3B2	7	enzymatic study	Zhang M (2011)	1
TRIM28	1	SMARCAD1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Seki Y (2010), Rowbotham SP (2011), Rowbotham SP (2011), Rowbotham SP (2011), Rowbotham SP (2011)	5
SNW1	0	SIN3A	13	pull down	Zhou S (2000)	1
ZNF764	2	GNE	2	affinity chromatography technology	Huttlin EL (2017)	1
PARP1	3	PCNA	0	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down	Frouin I (2003), Cazzalini O (2010), Cazzalini O (2010), Lee CH (2010), Pozo FM (2011), Sekimoto T (2010)	6
GTF3C3	2	SMARCC2	9	biochemical	Wan C (2015)	1
HDAC2	1	WIZ	2	affinity chromatography technology	Bantscheff M (2011)	1
PCBP1	2	HNRNPD	3	two hybrid, biochemical	Wang Z (1999), Wan C (2015)	2
DDX5	2	SMARCA4	19	affinity chromatography technology, affinity chromatography technology	Caretti G (2006), Caretti G (2006)	2
RUVBL2	4	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kim JH (2006), Rashid S (2009), Lee JS (2010), Lee JS (2010), Lee JS (2010)	5
NTRK1	1	NONO	3	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	DDX3X	52	affinity chromatography technology	Emdal KB (2015)	1
GTF3C4	0	GTF3C1	11	affinity chromatography technology, pull down, biochemical	Hsieh YJ (1999), Hsieh YJ (1999), Havugimana PC (2012)	3
SNW1	0	MSH2	4	affinity chromatography technology, affinity chromatography technology	Zhang C (2003), Lleres D (2010)	2
RUVBL2	4	RFC5	2	affinity chromatography technology	Jeronimo C (2007)	1
HNRNPU	12	TOP2A	2	affinity chromatography technology	Hein MY (2015)	1
TRIM28	1	SMARCC1	5	affinity chromatography technology	Seki Y (2010)	1
SNW1	0	HNRNPH1	3	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	RFC3	0	affinity chromatography technology	Rowbotham SP (2011)	1
XRCC6	3	SSRP1	1	affinity chromatography technology	Huttlin EL (2017)	1
SMARCAD1	1	ANAPC1	1	affinity chromatography technology	Rowbotham SP (2011)	1
GNE	2	RAB3GAP2	7	biochemical	Kristensen AR (2012)	1
ANP32A	3	PCBP1	2	two hybrid	Wang J (2011)	1
NTRK1	1	CPSF2	2	affinity chromatography technology	Emdal KB (2015)	1
SMARCC2	9	PBRM1	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ryme J (2009), Yan Z (2005), Mak AB (2010), Huttlin EL (2017)	4
ZNF829	0	KDM1A	2	two hybrid	Weimann M (2013)	1
HNRNPM	1	LMNB1	1	biochemical	Havugimana PC (2012)	1
HNRNPU	12	NONO	3	biochemical	Havugimana PC (2012)	1
NTRK1	1	MATR3	2	affinity chromatography technology	Emdal KB (2015)	1
SNW1	0	RFC2	0	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	CBX3	1	affinity chromatography technology, affinity chromatography technology	Rowbotham SP (2011), Rowbotham SP (2011)	2
TRIM28	1	HNRNPR	3	biochemical	Kristensen AR (2012)	1
SNW1	0	SMARCAD1	1	affinity chromatography technology	Lleres D (2010)	1
XRCC5	5	XRCC6	3	two hybrid, biochemical, two hybrid, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, enzymatic study, x-ray crystallography, affinity chromatography technology, pull down, biochemical, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique, imaging technique, affinity chromatography technology, affinity chromatography technology	Gell D (1999), Barlev NA (1998), Yang CR (1999), Singleton BK (1999), Song K (2000), Gell D (1999), Gell D (1999), Willis DM (2002), Willis DM (2002), Drouet J (2005), Drouet J (2005), Cohen HY (2004), Lan L (2010), Cooper MP (2000), Cooper MP (2000), Velma V (2010), Zheng Y (2011), Sucharov CC (2004), Sucharov CC (2004), Sibani S (2005), Sibani S (2005), Walker JR (2001), Nick McElhinny SA (2000), Nick McElhinny SA (2000), Sand-Dejmek J (2011), Sand-Dejmek J (2011), Sand-Dejmek J (2011), Pucci S (2009), Trougakos IP (2009), Havugimana PC (2012), Sartorius CA (2000), Sartorius CA (2000), Rivera-Calzada A (2007), Kelavkar UP (2001), Kelavkar UP (2001), Kristensen AR (2012), Kim E (2008), Wan C (2015), Hein MY (2015), Hein MY (2015), Nolens G (2009), Nolens G (2009), Nolens G (2009), Nolens G (2009), Huttlin EL (2017), Fantini D (2017)	46
SMARCAD1	1	ANP32A	3	biochemical	Wan C (2015)	1
SMARCAD1	1	GTF3C1	11	affinity chromatography technology	Rowbotham SP (2011)	1
NTRK1	1	SF3B3	4	affinity chromatography technology	Emdal KB (2015)	1
CSNK2A1	15	HDAC1	4	enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, affinity chromatography technology	Pflum MK (2001), Cai R (2001), Sun JM (2007), Zhang M (2011), Joshi P (2013)	5
SMARCAD1	1	ZNF235	3	affinity chromatography technology	Rowbotham SP (2011)	1
DDX5	2	SRSF1	0	biochemical	Havugimana PC (2012)	1
PCBP1	2	PTBP1	2	two hybrid, affinity chromatography technology, biochemical	Lim J (2006), Lim J (2006), Wan C (2015)	3
XRCC6	3	MSH6	2	two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical	Shahi A (2011), Shahi A (2011), Shahi A (2011), Kristensen AR (2012)	4
XRCC6	3	SUPT16H	4	affinity chromatography technology	Huttlin EL (2017)	1
PARP1	3	HDAC1	4	affinity chromatography technology, pull down, affinity chromatography technology, enzymatic study	Hassa PO (2005), Hassa PO (2005), Hang CT (2010), Rajamohan SB (2009)	4
CPSF1	6	SYMPK	3	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
CSNK2A1	15	TMPO	0	enzymatic study	Zhang M (2011)	1
SMARCAD1	1	USP7	14	affinity chromatography technology	Rowbotham SP (2011)	1
NTRK1	1	HNRNPR	3	affinity chromatography technology	Emdal KB (2015)	1
CSNK2A1	15	DDX3X	52	enzymatic study	Zhang M (2011)	1
U2AF2	7	DHX9	3	affinity chromatography technology	Whisenant TC (2015)	1
WIZ	2	POLR1E	3	affinity chromatography technology	Hein MY (2015)	1
CDC5L	2	SMARCAD1	1	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	HELLS	1	affinity chromatography technology	Emdal KB (2015)	1
FOXL1	0	HDAC2	1	affinity chromatography technology	Li X (2015)	1
SNW1	0	PRKDC	12	affinity chromatography technology	Lleres D (2010)	1
CSNK2A1	15	USP7	14	enzymatic study, enzymatic study	Carra G (2017), Khoronenkova SV (2012)	2
SMARCAD1	1	MDN1	19	affinity chromatography technology	Rowbotham SP (2011)	1
ZNF324B	1	RBAK	3	affinity chromatography technology	Huttlin EL (2017)	1
SMARCC2	9	HDAC1	4	affinity chromatography technology	Battaglioli E (2002)	1
SMARCAD1	1	E2F6	2	affinity chromatography technology	Rowbotham SP (2011)	1
NTRK1	1	HNRNPH1	3	affinity chromatography technology	Emdal KB (2015)	1
MSH6	2	XRCC5	5	affinity chromatography technology	Shahi A (2011)	1
ZNF764	2	GTF3C3	2	affinity chromatography technology	Huttlin EL (2017)	1
CDC5L	2	LAS1L	3	affinity chromatography technology	Lleres D (2010)	1
NONO	3	SMARCC1	5	pull down	Ito T (2008)	1
NTRK1	1	CDC27	2	affinity chromatography technology	Emdal KB (2015)	1
SMARCA5	4	SMARCC1	5	biochemical	Havugimana PC (2012)	1
WIZ	2	EHMT1	18	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
CSNK2A1	15	KDM1A	2	affinity chromatography technology	Peng B (2015)	1
ANAPC2	0	CDC16	2	biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Gmachl M (2000), Vodermaier HC (2003), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	6
SMARCA5	4	SMC3	16	biochemical	Hakimi MA (2002)	1
U2AF2	7	MATR3	2	affinity chromatography technology	Whisenant TC (2015)	1
MSH3	4	MSH6	2	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	SMARCA4	19	affinity chromatography technology	Rowbotham SP (2011)	1
GTF3C4	0	SMC1A	15	affinity chromatography technology	Boldt K (2016)	1
DDX17	2	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Mooney SM (2010), Mooney SM (2010)	2
PCNA	0	RFC2	0	pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Cai J (1997), Pan ZQ (1993), Ohta S (2002), Han J (2014), Hein MY (2015)	5
HNRNPH1	3	DDX5	2	affinity chromatography technology, two hybrid, two hybrid, biochemical	Jeronimo C (2007), Hegele A (2012), Hegele A (2012), Wan C (2015)	4
TMPO	0	DDX5	2	affinity chromatography technology	Brady GF (2018)	1
XRCC5	5	BAZ1A	5	affinity chromatography technology, pull down	Lan L (2010), Lan L (2010)	2
CEP19	0	MSH6	2	bioid	Gupta GD (2015)	1
SMARCA5	4	SMC1A	15	biochemical	Hakimi MA (2002)	1
FOXL1	0	GTF3C1	11	affinity chromatography technology	Li X (2015)	1
MATR3	2	DDX17	2	affinity chromatography technology	Hein MY (2015)	1
MATR3	2	HNRNPH1	3	affinity chromatography technology	Hein MY (2015)	1
HDAC2	1	YY1	7	pull down, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Yang WM (1997), Yao YL (2001), Kalenik JL (1997), Glenn DJ (2009), Sun JM (2007)	5
CDC5L	2	PCBP1	2	affinity chromatography technology	Lleres D (2010)	1
CSNK2A1	15	XRCC5	5	enzymatic study	Olsen BB (2010)	1
RUVBL1	2	SMARCC2	9	biochemical	Havugimana PC (2012)	1
CPSF1	6	CPSF2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CDC5L	2	SF3B2	7	affinity chromatography technology, biochemical, affinity chromatography technology	Ajuh P (2000), Ajuh P (2000), Lleres D (2010)	3
SMARCB1	1	HNRNPM	1	two hybrid	Daakour S (2016)	1
U2AF2	7	ILF3	5	affinity chromatography technology	Whisenant TC (2015)	1
U2AF2	7	NUMA1	10	affinity chromatography technology	Whisenant TC (2015)	1
NTRK1	1	SMARCA4	19	affinity chromatography technology	Emdal KB (2015)	1
SMC1A	15	NUMA1	10	affinity chromatography technology	Gregson HC (2001)	1
XRCC5	5	SSRP1	1	affinity chromatography technology, imaging technique	Sand-Dejmek J (2011), Sand-Dejmek J (2011)	2
PTBP1	2	HNRNPK	4	two hybrid, two hybrid, pull down, pull down, biochemical, biochemical	Kim JH (2000), Kim JH (2000), Kim JH (2000), Kim JH (2000), Havugimana PC (2012), Wan C (2015)	6
HNRNPU	12	DDX5	2	affinity chromatography technology	Hein MY (2015)	1
HDAC1	4	YY1	7	pull down, affinity chromatography technology, imaging technique, affinity chromatography technology	Yang WM (1997), He Y (2007), He G (2002), Sun JM (2007)	4
RUVBL2	4	SMARCA5	4	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	RBAK	3	affinity chromatography technology	Rowbotham SP (2011)	1
SNRPD3	0	SMARCAD1	1	biochemical	Wan C (2015)	1
ZNF785	0	ZNF324	1	affinity chromatography technology	Huttlin EL (2017)	1
RUVBL1	2	PRKDC	12	affinity chromatography technology	Izumi N (2010)	1
ZNF550	3	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
SMARCAD1	1	MTA2	1	affinity chromatography technology	Rowbotham SP (2011)	1
U2AF2	7	PRPF19	2	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	David CJ (2011), David CJ (2011), David CJ (2011), Whisenant TC (2015)	4
SMARCAD1	1	GTF3C4	0	affinity chromatography technology	Rowbotham SP (2011)	1
DDX5	2	SF3B3	4	biochemical	Havugimana PC (2012)	1
PCNA	0	PRKDC	12	affinity chromatography technology	Ohta S (2002)	1
SMARCAD1	1	PARP1	3	affinity chromatography technology, affinity chromatography technology	Rowbotham SP (2011), Rowbotham SP (2011)	2
NTRK1	1	SMARCD2	1	affinity chromatography technology	Emdal KB (2015)	1
SIN3A	13	CSNK2A1	15	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Sun JM (2007), Sun JM (2007), Havugimana PC (2012), Wan C (2015)	4
CDC5L	2	ANAPC1	1	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	TOP2A	2	affinity chromatography technology	Rowbotham SP (2011)	1
HDAC2	1	KDM1A	2	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, genetic interference	Hakimi MA (2002), Hakimi MA (2003), Hakimi MA (2003), Hakimi MA (2003), Tong JK (1998), Lee MG (2005), Humphrey GW (2001), Humphrey GW (2001), Zibetti C (2010), Wang Y (2009), Li Q (2011), Cui S (2011), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Wong AS (2016)	17
SNW1	0	SRSF1	0	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	HNRNPK	4	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	MSH6	2	affinity chromatography technology	Emdal KB (2015)	1
YY1	7	ZNF24	1	biochemical	Havugimana PC (2012)	1
CDC5L	2	WDR33	3	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	RFC3	0	affinity chromatography technology	Emdal KB (2015)	1
HNRNPM	1	SMARCA5	4	biochemical	Havugimana PC (2012)	1
RUVBL1	2	RUVBL2	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, biochemical, two hybrid, biochemical, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Ewing RM (2007), Jeronimo C (2007), Jeronimo C (2007), Puri T (2007), Rashid S (2009), Kim JH (2007), Kim JH (2007), McKeegan KS (2007), Lee JS (2010), Lee JS (2010), Cai Y (2007), Cai Y (2007), Ikura T (2000), Havugimana PC (2012), Venteicher AS (2008), Venteicher AS (2008), Bauer A (2000), Bauer A (2000), Bauer A (2000), Salzer U (1999), Izumi N (2010), Kristensen AR (2012), Rolland T (2014), Wan C (2015), Jeganathan A (2015), Huttlin EL (2017), Cloutier P (2017), Cloutier P (2017)	29
HNRNPU	12	SRSF1	0	biochemical	Havugimana PC (2012)	1
HNRNPR	3	GTF3C1	11	biochemical	Havugimana PC (2012)	1
NUMA1	10	ZC3H18	4	biochemical	Wan C (2015)	1
NTRK1	1	PELP1	3	affinity chromatography technology	Emdal KB (2015)	1
U2AF2	7	XRCC6	3	affinity chromatography technology	Whisenant TC (2015)	1
NTRK1	1	SSRP1	1	affinity chromatography technology	Emdal KB (2015)	1
SMARCC1	5	SMARCD2	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CDC5L	2	KDM1A	2	two hybrid	Camargo LM (2007)	1
NTRK1	1	DDX19A	0	affinity chromatography technology	Emdal KB (2015)	1
HDAC1	4	EHMT2	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Joshi P (2013), Hein MY (2015), Huttlin EL (2017)	3
CSNK2A1	15	CHD4	22	enzymatic study	Zhang M (2011)	1
TOP2A	2	CSNK2A1	15	affinity chromatography technology, enzymatic study, biochemical	Chen MC (2011), Zhang M (2011), Wan C (2015)	3
SMARCAD1	1	SF3B3	4	affinity chromatography technology	Rowbotham SP (2011)	1
MATR3	2	FUBP3	0	affinity chromatography technology	Hein MY (2015)	1
HNRNPK	4	SRSF1	0	biochemical	Havugimana PC (2012)	1
SNW1	0	RUVBL1	2	affinity chromatography technology	Lleres D (2010)	1
TMPO	0	DDX3X	52	affinity chromatography technology	Brady GF (2018)	1
CDC27	2	CDC16	2	affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, imaging technique, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vodermaier HC (2003), Ollendorff V (1997), Kallio M (1998), Gmachl M (2000), Kraft C (2003), Li Y (1997), Lara-Gonzalez P (2011), Binne UK (2007), van Zon W (2010), Dube P (2005), Holzmann J (2011), Hayes MJ (2006), Tugendreich S (1995), Havugimana PC (2012), Vodermaier HC (2003), Wan C (2015), Hein MY (2015), Kelly A (2014), Listovsky T (2013), Qiao R (2016), Huttlin EL (2017), Boldt K (2016)	22
SMARCAD1	1	TMPO	0	affinity chromatography technology	Rowbotham SP (2011)	1
GNE	2	SMARCAD1	1	biochemical	Kristensen AR (2012)	1
SMARCAD1	1	SMARCE1	1	affinity chromatography technology	Rowbotham SP (2011)	1
PBRM1	5	SMARCA4	19	affinity chromatography technology	Yan Z (2005)	1
HNRNPK	4	U2AF2	7	biochemical, two hybrid, two hybrid, affinity chromatography technology	Havugimana PC (2012), Hegele A (2012), Hegele A (2012), Whisenant TC (2015)	4
XRCC5	5	SUPT16H	4	affinity chromatography technology, affinity chromatography technology	Sand-Dejmek J (2011), Sand-Dejmek J (2011)	2
ZNF829	0	TRIM28	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
SMARCAD1	1	SMARCC2	9	affinity chromatography technology	Rowbotham SP (2011)	1
MTA2	1	KDM1A	2	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Wang Y (2009), Wang Y (2009), Wang Y (2009), Li Q (2011), Cui S (2011)	5
SMARCAD1	1	MSH3	4	affinity chromatography technology	Rowbotham SP (2011)	1
RUVBL2	4	HDAC2	1	affinity chromatography technology	Rashid S (2009)	1
HNRNPK	4	MATR3	2	two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Rolland T (2014), Hein MY (2015)	3
DHX9	3	TOP2A	2	affinity chromatography technology	Zhou K (2003)	1
RFC4	1	HNRNPM	1	biochemical	Kristensen AR (2012)	1
CDC5L	2	RFC5	2	affinity chromatography technology	Lleres D (2010)	1
CDC5L	2	RFC4	1	affinity chromatography technology	Lleres D (2010)	1
TMPO	0	DDX17	2	affinity chromatography technology	Brady GF (2018)	1
SMARCAD1	1	EHMT1	18	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	SSRP1	1	affinity chromatography technology	Rowbotham SP (2011)	1
XRCC6	3	BAZ1A	5	pull down	Lan L (2010)	1
NTRK1	1	HNRNPU	12	affinity chromatography technology	Emdal KB (2015)	1
MSH6	2	PCNA	0	far western blotting, affinity chromatography technology, unspecified method, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, far western blotting, affinity chromatography technology, biochemical, affinity chromatography technology	Kleczkowska HE (2001), Kleczkowska HE (2001), Clark AB (2000), Ohta S (2002), Jascur T (2011), Schoepf B (2012), Havugimana PC (2012), Dzantiev L (2004), Han J (2014), Wan C (2015), Hein MY (2015)	11
CEP19	0	SMARCAD1	1	bioid	Gupta GD (2015)	1
NTRK1	1	TRIM28	1	affinity chromatography technology	Emdal KB (2015)	1
CEP19	0	ANAPC1	1	bioid	Gupta GD (2015)	1
NTRK1	1	HNRNPD	3	affinity chromatography technology	Emdal KB (2015)	1
PRPF19	2	SNW1	0	biochemical, affinity chromatography technology, affinity chromatography technology	Wan C (2015), Lleres D (2010), Huttlin EL (2017)	3
CDC27	2	ANAPC7	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Vodermaier HC (2003), Gmachl M (2000), Kraft C (2003), Lara-Gonzalez P (2011), Tran K (2008), Dube P (2005), Holzmann J (2011), Havugimana PC (2012), Sedgwick GG (2012), Song MS (2011), Vodermaier HC (2003), Tran K (2010), Yamaguchi M (2015), Yamaguchi M (2015), Wan C (2015), Kelly A (2014), Craney A (2016), Qiao R (2016), Boldt K (2016)	19
NTRK1	1	CPSF3	5	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	SMARCD2	1	affinity chromatography technology	Rowbotham SP (2011)	1
CDC5L	2	RFC3	0	affinity chromatography technology	Lleres D (2010)	1
HDAC1	4	SMARCA5	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
DHX9	3	XRCC6	3	affinity chromatography technology	Wang Q (2005)	1
YY1	7	DDX5	2	affinity chromatography technology	Vella P (2011)	1
CHD4	22	PARP1	3	pull down, affinity chromatography technology	Silva AP (2016), Qi W (2016)	2
SNW1	0	DDX19A	0	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	HNRNPL	3	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCB1	1	HDAC1	4	biochemical	Sif S (2001)	1
SMARCE1	1	CHD4	22	affinity chromatography technology, affinity chromatography technology	ONeill DW (2000), ONeill DW (2000)	2
SMARCAD1	1	CPSF3	5	affinity chromatography technology	Rowbotham SP (2011)	1
EPHA2	3	SMARCAD1	1	affinity chromatography technology	Hein MY (2015)	1
ZNF689	0	TRIM28	1	affinity chromatography technology, affinity chromatography technology	Silva FP (2006), Silva FP (2006)	2
HDAC1	4	RING1	2	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
RFC3	0	PCNA	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Merkle CJ (2003), Ohta S (2002), Han J (2014), Wan C (2015)	4
SMARCAD1	1	CSNK2A1	15	affinity chromatography technology	Rowbotham SP (2011)	1
MSH6	2	SUPT16H	4	biochemical	Havugimana PC (2012)	1
NTRK1	1	PTBP1	2	affinity chromatography technology	Emdal KB (2015)	1
ZNF211	0	EHMT2	4	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPK	4	HNRNPR	3	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	NR2F2	4	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	ZNF689	0	affinity chromatography technology	Rowbotham SP (2011)	1
SMC1A	15	SMC3	16	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kim ST (2002), Lee J (2003), Lee J (2003), Schmiesing JA (1998), Gregson HC (2001), Kueng S (2006), Schmitz J (2007), Schmitz J (2007), Losada A (2000), Kang H (2011), Havugimana PC (2012), Wan C (2015), Hein MY (2015), Hein MY (2015), Boldt K (2016)	15
NTRK1	1	SIN3A	13	affinity chromatography technology	Emdal KB (2015)	1
HNRNPU	12	HNRNPD	3	two hybrid, two hybrid, affinity chromatography technology, affinity chromatography technology	Hegele A (2012), Hegele A (2012), Hein MY (2015), Hein MY (2015)	4
TMPO	0	HNRNPH1	3	affinity chromatography technology	Brady GF (2018)	1
SMARCAD1	1	ZNF649	1	affinity chromatography technology	Rowbotham SP (2011)	1
YY1	7	RUVBL1	2	biochemical, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wu S (2007), Wu S (2007), Wu S (2007), Cai Y (2007), Cai Y (2007), Huttlin EL (2017), Hauri S (2016)	7
HNRNPH1	3	DDX17	2	affinity chromatography technology	Jeronimo C (2007)	1
SMARCAD1	1	GTF3C5	4	affinity chromatography technology	Rowbotham SP (2011)	1
HDAC1	4	HELLS	1	imaging technique, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Zhou R (2009), Zhou R (2009), Zhou R (2009), Zhou R (2009), Myant K (2008)	5
FOXL1	0	TRMT2A	4	affinity chromatography technology	Li X (2015)	1
DHX9	3	PRKDC	12	affinity chromatography technology, enzymatic study, biochemical	Mischo HE (2005), Mischo HE (2005), Mischo HE (2005)	3
CBX3	1	E2F6	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ogawa H (2002), Hauri S (2016), Hauri S (2016)	3
CDC5L	2	SF3B3	4	biochemical, affinity chromatography technology	Wan C (2015), Lleres D (2010)	2
NTRK1	1	SRSF1	0	affinity chromatography technology	Emdal KB (2015)	1
XRCC5	5	MSH2	4	biochemical	Kristensen AR (2012)	1
KDM1A	2	TRIM28	1	affinity chromatography technology	Cui S (2011)	1
CSNK2A1	15	XRCC6	3	enzymatic study	Olsen BB (2010)	1
SMARCAD1	1	FUBP3	0	affinity chromatography technology	Rowbotham SP (2011)	1
KDM1A	2	MTA3	3	affinity chromatography technology, pull down, affinity chromatography technology	Wang Y (2009), Wang Y (2009), Li Q (2011)	3
SNW1	0	SF3B3	4	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	GTF3C3	2	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	HDAC1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Rowbotham SP (2011), Rowbotham SP (2011), Rowbotham SP (2011)	3
SF3B3	4	SMC1A	15	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MATR3	2	DHX9	3	affinity chromatography technology	Hein MY (2015)	1
SSRP1	1	PARP1	3	affinity chromatography technology	Huttlin EL (2017)	1
SNW1	0	RFC3	0	affinity chromatography technology	Lleres D (2010)	1
HNRNPD	3	GTF3C3	2	two hybrid	Lehner B (2004)	1
NTRK1	1	XRCC5	5	affinity chromatography technology	Emdal KB (2015)	1
RUVBL2	4	EHMT2	4	affinity chromatography technology, affinity chromatography technology, pull down	Lee JS (2010), Lee JS (2010), Lee JS (2010)	3
SNW1	0	HELLS	1	affinity chromatography technology	Lleres D (2010)	1
HNRNPR	3	ILF3	5	biochemical	Havugimana PC (2012)	1
CDC5L	2	TOP2A	2	affinity chromatography technology, biochemical, affinity chromatography technology	Ajuh P (2000), Ajuh P (2000), Lleres D (2010)	3
YY1	7	MTA2	1	pull down	Yao YL (2003)	1
SMARCAD1	1	PTBP1	2	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	EHMT2	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Rowbotham SP (2011), Rowbotham SP (2011), Rowbotham SP (2011)	3
PCNA	0	RFC5	2	pull down, pull down, affinity chromatography technology, affinity chromatography technology	Cai J (1997), Mossi R (1997), Ohta S (2002), Han J (2014)	4
SMARCE1	1	SMARCC2	9	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Zhao K (1998), Hu K (2006), Lai D (2009), Ryme J (2009), Kaeser MD (2008), Kaeser MD (2008), Chen J (2005), Mak AB (2010), Mak AB (2010), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	13
SMARCAD1	1	ACTL6A	4	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	SMC1A	15	affinity chromatography technology	Rowbotham SP (2011)	1
CBX3	1	WIZ	2	affinity chromatography technology	Hauri S (2016)	1
SMARCE1	1	SMARCD2	1	affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Mak AB (2010), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
GTF3C4	0	GTF3C5	4	affinity chromatography technology, pull down, biochemical	Hsieh YJ (1999), Hsieh YJ (1999), Havugimana PC (2012)	3
MSH3	4	PCNA	0	far western blotting, affinity chromatography technology, unspecified method, affinity chromatography technology, affinity chromatography technology, two hybrid	Kleczkowska HE (2001), Kleczkowska HE (2001), Clark AB (2000), Ohta S (2002), Ohta S (2002), Rolland T (2014)	6
PARP1	3	XRCC6	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, enzymatic study, pull down, pull down, affinity chromatography technology, affinity chromatography technology	Ju BG (2006), Galande S (1999), Galande S (1999), Galande S (1999), Idogawa M (2007), Li B (2004), Li B (2004), Yin H (2006), Yin H (2006), Wu T (2013), Huttlin EL (2017)	11
HNRNPR	3	U2AF2	7	biochemical, affinity chromatography technology	Havugimana PC (2012), Whisenant TC (2015)	2
SMARCAD1	1	ZNF24	1	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPL	3	HNRNPM	1	biochemical	Havugimana PC (2012)	1
SNW1	0	TMPO	0	affinity chromatography technology	Lleres D (2010)	1
CSNK2A1	15	HNRNPL	3	enzymatic study	Zhang M (2011)	1
ANAPC5	2	ANAPC7	2	biochemical, affinity chromatography technology	Havugimana PC (2012), Sedgwick GG (2012)	2
HNRNPD	3	FUBP3	0	affinity chromatography technology	Hein MY (2015)	1
RAD50	3	MSH6	2	biochemical	Wang Y (2000)	1
TMPO	0	HNRNPL	3	affinity chromatography technology	Brady GF (2018)	1
PELP1	3	RUVBL1	2	biochemical	Wan C (2015)	1
SMARCAD1	1	LMNB1	1	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCA4	19	LMNB1	1	biochemical	Reyes JC (1997)	1
DDX5	2	KHDRBS1	1	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
HDAC1	4	DDX5	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wilson BJ (2004), Wilson BJ (2004), Guo J (2010), Jacobs AM (2007), Mooney SM (2010), Mooney SM (2010)	6
SYMPK	3	WDR33	3	biochemical, affinity chromatography technology	Wan C (2015), Hein MY (2015)	2
SMARCAD1	1	XRCC5	5	affinity chromatography technology	Rowbotham SP (2011)	1
XRCC5	5	DDX17	2	affinity chromatography technology	Sand-Dejmek J (2011)	1
TMPO	0	SF3B3	4	affinity chromatography technology	Brady GF (2018)	1
CDC5L	2	DDX5	2	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	HNRNPH1	3	affinity chromatography technology	Rowbotham SP (2011)	1
ACTL6A	4	SMARCC1	5	affinity chromatography technology, biochemical, biochemical	Van Duyne R (2011), Havugimana PC (2012), Wan C (2015)	3
SMARCAD1	1	YY1	7	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPD	3	PTBP1	2	biochemical, two hybrid, two hybrid, biochemical, biochemical	Havugimana PC (2012), Hegele A (2012), Hegele A (2012), Kristensen AR (2012), Wan C (2015)	5
DOK4	3	SMARCAD1	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
KHDRBS1	1	DDX17	2	biochemical	Wan C (2015)	1
SMARCAD1	1	RFC5	2	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPK	4	SF3B3	4	biochemical	Havugimana PC (2012)	1
SMARCC2	9	SMARCD2	1	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Mak AB (2010), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	4
L3MBTL2	1	MTA2	1	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	HNRNPR	3	biochemical	Kristensen AR (2012)	1
PARP1	3	MTA3	3	two hybrid	Arroyo R (2015)	1
SMARCAD1	1	WDR18	2	affinity chromatography technology	Rowbotham SP (2011)	1
DHX9	3	RFC4	1	biochemical	Kristensen AR (2012)	1
CBX3	1	ZNF689	0	affinity chromatography technology	Hauri S (2016)	1
SMARCAD1	1	CDC16	2	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCE1	1	HDAC1	4	affinity chromatography technology	Battaglioli E (2002)	1
CDC5L	2	PARP1	3	affinity chromatography technology	Lleres D (2010)	1
ZNF785	0	GTF3C3	2	affinity chromatography technology	Huttlin EL (2017)	1
E2F6	2	RING1	2	affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology	Trimarchi JM (2001), Trimarchi JM (2001), Trimarchi JM (2001), Trimarchi JM (2001), Hauri S (2016), Hauri S (2016)	6
EHMT2	4	TRIM28	1	affinity chromatography technology	Hauri S (2016)	1
TMPO	0	LMNB1	1	two hybrid, pull down, pull down, affinity chromatography technology	Furukawa K (1998), Furukawa K (1998), Foisner R (1993), Hein MY (2015)	4
GTF3C4	0	GTF3C3	2	affinity chromatography technology, biochemical	Hsieh YJ (1999), Havugimana PC (2012)	2
SMARCD2	1	SMARCB1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CDC5L	2	SMARCA5	4	affinity chromatography technology	Lleres D (2010)	1
PARP1	3	PRKDC	12	affinity chromatography technology	Ju BG (2006)	1
SMARCAD1	1	KDM1A	2	affinity chromatography technology	Rowbotham SP (2011)	1
RUVBL2	4	DMAP1	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Doyon Y (2004), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Cloutier P (2017)	6
SMARCAD1	1	HNRNPM	1	affinity chromatography technology	Rowbotham SP (2011)	1
CSNK2A1	15	SUPT16H	4	biochemical, affinity chromatography technology, biochemical	Havugimana PC (2012), So J (2015), Wan C (2015)	3
MATR3	2	KHDRBS1	1	affinity chromatography technology	Hein MY (2015)	1
FOXL1	0	SMARCA5	4	affinity chromatography technology	Li X (2015)	1
SMARCB1	1	SMARCC1	5	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Sif S (2001), Wang W (1996), Ryme J (2009), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Foster KS (2006), Foster KS (2006), Medjkane S (2004), Sif S (1998), Dallas PB (1998), Bartlett C (2011), Havugimana PC (2012), Wan C (2015)	15
RUVBL2	4	MATR3	2	affinity chromatography technology	Jeronimo C (2007)	1
DHX9	3	SRSF1	0	biochemical	Havugimana PC (2012)	1
TMPO	0	RUVBL2	4	affinity chromatography technology	Brady GF (2018)	1
SNW1	0	HNRNPD	3	affinity chromatography technology	Lleres D (2010)	1
ZNF689	0	HNRNPU	12	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Silva FP (2006), Silva FP (2006), Silva FP (2006)	3
ZNF669	0	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Yao YL (2003), Grozinger CM (1999), Tong JK (1998), Tong JK (1998), Humphrey GW (2001), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Zhang Y (1998), Terhune SS (2010), Polo SE (2010), Xue Y (1998), Xue Y (1998), Xue Y (1998), Kwintkiewicz J (2011), Cui S (2011), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Quan J (2014), Wan C (2015), Hein MY (2015), Weiss K (2016), Huttlin EL (2017)	28
SNW1	0	CDC23	3	affinity chromatography technology	Lleres D (2010)	1
TOP2A	2	RING1	2	affinity chromatography technology	Alchanati I (2009)	1
SMARCAD1	1	RAB3GAP2	7	biochemical	Kristensen AR (2012)	1
TMPO	0	SRSF1	0	affinity chromatography technology	Brady GF (2018)	1
L3MBTL2	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2017), Hauri S (2016)	2
SMARCAD1	1	DDX17	2	affinity chromatography technology	Rowbotham SP (2011)	1
PTBP1	2	DDX17	2	biochemical	Wan C (2015)	1
TRMT2A	4	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPD	3	HDAC1	4	affinity chromatography technology, pull down	Lee C (2008), Lee C (2008)	2
SMARCAD1	1	HNRNPR	3	affinity chromatography technology	Rowbotham SP (2011)	1
ARID2	5	SMARCC2	9	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yan Z (2005), Mak AB (2010), Huttlin EL (2017)	3
CDC5L	2	MSH2	4	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	PARP1	3	affinity chromatography technology	Emdal KB (2015)	1
ZNF764	2	GTF3C1	11	affinity chromatography technology	Huttlin EL (2017)	1
CSNK2A1	15	DDX17	2	enzymatic study	Zhang M (2011)	1
HDAC2	1	SMC3	16	biochemical	Hakimi MA (2002)	1
NTRK1	1	MSH2	4	affinity chromatography technology	Emdal KB (2015)	1
HNRNPU	12	ILF3	5	affinity chromatography technology	Hein MY (2015)	1
FOXL1	0	RAD50	3	affinity chromatography technology	Li X (2015)	1
ZNF324B	1	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
HNRNPU	12	RFC2	0	affinity chromatography technology	Hein MY (2015)	1
SNW1	0	SMARCA5	4	affinity chromatography technology	Lleres D (2010)	1
GTF3C3	2	SMARCA4	19	biochemical	Wan C (2015)	1
HNRNPM	1	SRSF1	0	biochemical	Havugimana PC (2012)	1
CBX3	1	EHMT1	18	affinity chromatography technology	Hauri S (2016)	1
RFC2	0	RFC4	1	biochemical, biochemical, biochemical, pull down, affinity chromatography technology, biochemical, affinity chromatography technology	Cai J (1997), Cai J (1998), Havugimana PC (2012), Uhlmann F (1997), Gupte RS (2006), Wan C (2015), Huttlin EL (2017)	7
KDM1A	2	SMARCC1	5	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
USP7	14	RING1	2	affinity chromatography technology, pull down, affinity chromatography technology	Maertens GN (2010), de Bie P (2010), Hein MY (2015)	3
RFC2	0	RFC5	2	biochemical, biochemical, biochemical, biochemical, affinity chromatography technology	Cai J (1997), Cai J (1998), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	5
CDC5L	2	NONO	3	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	SMARCB1	1	affinity chromatography technology	Rowbotham SP (2011)	1
SNW1	0	RFC4	1	affinity chromatography technology	Lleres D (2010)	1
FOXL1	0	SMC3	16	affinity chromatography technology	Li X (2015)	1
SMARCB1	1	SMARCA4	19	biochemical, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, genetic interference, affinity chromatography technology, affinity chromatography technology	Sif S (2001), Sullivan EK (2001), Wang W (1996), Wang W (1996), Otsuki T (2001), Zhao K (1998), Reyes JC (1997), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Pal S (2003), Bultman SJ (2005), Gong F (2008), Medjkane S (2004), Ito T (2008), Sif S (1998), Dallas PB (1998), Tando T (2010), Bakshi R (2010), Bakshi R (2010), Mahmoudi T (2006), Mahmoudi T (2006), Bartlett C (2011), Nishimoto N (2012), Havugimana PC (2012), Wan C (2015), Shen JP (2017), Pchelintsev NA (2013), Pchelintsev NA (2013)	30
SMARCB1	1	CDC23	3	two hybrid	Daakour S (2016)	1
NTRK1	1	MTA2	1	affinity chromatography technology	Emdal KB (2015)	1
MDN1	19	PELP1	3	biochemical	Havugimana PC (2012)	1
FUBP3	0	SMARCC1	5	biochemical	Wan C (2015)	1
SSRP1	1	ZC3H18	4	biochemical	Wan C (2015)	1
U2AF2	7	TMPO	0	affinity chromatography technology	Whisenant TC (2015)	1
RFC3	0	RFC4	1	affinity chromatography technology, pull down, biochemical, pull down, biochemical, affinity chromatography technology	Ellison V (1998), Uhlmann F (1996), Havugimana PC (2012), Uhlmann F (1997), Wan C (2015), Huttlin EL (2017)	6
SIN3A	13	SMARCC2	9	affinity chromatography technology	Nakamura T (2002)	1
SMARCAD1	1	ANAPC7	2	affinity chromatography technology	Rowbotham SP (2011)	1
FOXL1	0	CPSF2	2	affinity chromatography technology	Li X (2015)	1
GTF3C2	2	GTF3C5	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Hsieh YJ (1999), Hsieh YJ (1999), Sinn E (1995), Havugimana PC (2012)	4
NTRK1	1	BEND3	4	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	SMARCC2	9	affinity chromatography technology	Emdal KB (2015)	1
CDC5L	2	MSH6	2	affinity chromatography technology	Lleres D (2010)	1
TMPO	0	HNRNPM	1	affinity chromatography technology	Brady GF (2018)	1
HNRNPM	1	SMC3	16	biochemical	Havugimana PC (2012)	1
L3MBTL2	1	RING1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Huttlin EL (2017), Hauri S (2016), Hauri S (2016)	3
PCNA	0	MSH2	4	affinity chromatography technology, far western blotting	Ohta S (2002), Dzantiev L (2004)	2
RUVBL1	2	DMAP1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Jeronimo C (2007), Negishi M (2009), Doyon Y (2004), Doyon Y (2004), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017), Cloutier P (2017)	8
CDC5L	2	CDC23	3	affinity chromatography technology	Lleres D (2010)	1
MTA3	3	MTA2	1	affinity chromatography technology, biochemical	Bantscheff M (2011), Wan C (2015)	2
CDC5L	2	CPSF3	5	affinity chromatography technology	Lleres D (2010)	1
CHD4	22	SMARCC1	5	affinity chromatography technology, affinity chromatography technology, biochemical	Mahajan MC (2005), ONeill DW (2000), Havugimana PC (2012)	3
YY1	7	ACTL6A	4	biochemical, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Wu S (2007), Wu S (2007), Wu S (2007), Cai Y (2007), Hauri S (2016)	5
L3MBTL2	1	CBX3	1	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Trojer P (2007), Trojer P (2011), Trojer P (2011), Trojer P (2011), Hauri S (2016), Hauri S (2016)	6
SF3B3	4	U2AF2	7	biochemical, affinity chromatography technology	Havugimana PC (2012), Whisenant TC (2015)	2
HNRNPL	3	HNRNPR	3	biochemical	Havugimana PC (2012)	1
HNRNPD	3	MSH2	4	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	ZNF324	1	affinity chromatography technology	Rowbotham SP (2011)	1
YY1	7	ILF3	5	pull down, affinity chromatography technology	Rezai-Zadeh N (2003), Rezai-Zadeh N (2003)	2
SMARCAD1	1	L3MBTL2	1	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	HNRNPU	12	affinity chromatography technology	Rowbotham SP (2011)	1
MSH2	4	EPHA2	3	fluorescent resonance energy transfe	Ivanov AA (2017)	1
SMARCAD1	1	MSH6	2	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPR	3	SF3B3	4	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CPSF1	6	WDR33	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PCNA	0	HDAC1	4	affinity chromatography technology, pull down, affinity chromatography technology	Milutinovic S (2002), Milutinovic S (2002), Naryzhny SN (2004)	3
HNRNPH1	3	HNRNPD	3	affinity chromatography technology	Jeronimo C (2007)	1
NTRK1	1	CSNK2A1	15	affinity chromatography technology	Emdal KB (2015)	1
TOP2A	2	MSH2	4	genetic interference	Srivas R (2016)	1
ILF3	5	RAD50	3	affinity chromatography technology, affinity chromatography technology	Karmakar S (2010), Karmakar S (2010)	2
DHX9	3	SSRP1	1	biochemical	Havugimana PC (2012)	1
HDAC1	4	WIZ	2	affinity chromatography technology	Huttlin EL (2017)	1
CHD4	22	KDM1A	2	affinity chromatography technology, affinity chromatography technology	Cui S (2011), Cui S (2011)	2
HNRNPR	3	KHDRBS1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
ZNF785	0	GTF3C1	11	affinity chromatography technology	Huttlin EL (2017)	1
HDAC1	4	SMARCA4	19	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, genetic interference	Qiu Z (2008), Battaglioli E (2002), Hang CT (2010), DiRenzo J (2000)	4
SMARCA5	4	HDAC2	1	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, imaging technique, biochemical, biochemical	Hakimi MA (2002), Hakimi MA (2002), Zhou J (2005), Zhou J (2005), Zhou J (2005), Havugimana PC (2012), Wan C (2015)	7
SUPT16H	4	POLR1E	3	affinity chromatography technology	Birch JL (2009)	1
TRIM28	1	MTA2	1	biochemical	Kristensen AR (2012)	1
FOXL1	0	GTF3C4	0	affinity chromatography technology	Li X (2015)	1
PRPF19	2	SRSF1	0	biochemical	Havugimana PC (2012)	1
CDC5L	2	HNRNPR	3	biochemical	Havugimana PC (2012)	1
MATR3	2	HNRNPU	12	biochemical	Wan C (2015)	1
HNRNPM	1	HNRNPR	3	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	DHX9	3	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCA4	19	ACTL6A	4	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical	Wang W (1996), Zhao K (1998), Pal S (2003), Tando T (2010), Van Duyne R (2011), Havugimana PC (2012), Wan C (2015)	7
CSNK2A1	15	MSH6	2	enzymatic study	Zhang M (2011)	1
SMARCAD1	1	SIN3A	13	affinity chromatography technology	Rowbotham SP (2011)	1
FOXL1	0	BAZ1A	5	affinity chromatography technology	Li X (2015)	1
SMARCAD1	1	ANAPC5	2	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	DDX5	2	affinity chromatography technology	Rowbotham SP (2011)	1
ZNF764	2	TRIM28	1	affinity chromatography technology	Huttlin EL (2017)	1
U2AF2	7	PCBP1	2	affinity chromatography technology	Whisenant TC (2015)	1
SMARCB1	1	HDAC2	1	biochemical, biochemical	Sif S (2001), Havugimana PC (2012)	2
GTF3C4	0	SMC3	16	affinity chromatography technology	Boldt K (2016)	1
SMARCE1	1	PBRM1	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ryme J (2009), Yan Z (2005), Huttlin EL (2015), Huttlin EL (2017)	4
SMARCA4	19	SMARCE1	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Wang W (1996), Zhao K (1998), Zhao K (1998), Hu K (2006), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Pal S (2003), Bultman SJ (2005), Battaglioli E (2002), ONeill DW (2000), Tando T (2010), Mak AB (2010), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	18
SMARCAD1	1	CHD4	22	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	HELLS	1	affinity chromatography technology	Rowbotham SP (2011)	1
CDC5L	2	CDC27	2	affinity chromatography technology	Lleres D (2010)	1
SMARCB1	1	SMARCE1	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Wang W (1996), Zhao K (1998), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Chen J (2005), Mak AB (2010), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	12
ZNF785	0	BEND3	4	affinity chromatography technology	Huttlin EL (2017)	1
PRKDC	12	U2AF2	7	biochemical	Havugimana PC (2012)	1
NTRK1	1	XRCC6	3	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	DNAJA2	2	affinity chromatography technology	Emdal KB (2015)	1
SMARCB1	1	ACTL6A	4	biochemical, biochemical	Wang W (1996), Wan C (2015)	2
HNRNPM	1	SNRPD3	0	biochemical	Havugimana PC (2012)	1
CDC5L	2	RFC2	0	affinity chromatography technology	Lleres D (2010)	1
SMARCA5	4	SIN3A	13	affinity chromatography technology	Burgio G (2008)	1
HNRNPM	1	SUPT16H	4	biochemical	Havugimana PC (2012)	1
PARP1	3	HDAC2	1	affinity chromatography technology, pull down, affinity chromatography technology	Hassa PO (2005), Hassa PO (2005), Hang CT (2010)	3
USP7	14	TMPO	0	two hybrid, affinity chromatography technology, affinity chromatography technology	Lim J (2006), Hein MY (2015), Brady GF (2018)	3
FOXL1	0	GTF3C5	4	affinity chromatography technology	Li X (2015)	1
DDX5	2	SNW1	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
HDAC2	1	CHD4	22	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Hakimi MA (2003), Schmidt DR (1999), Schmidt DR (1999), Tong JK (1998), Tong JK (1998), Tong JK (1998), ONeill DW (2000), Zhang Y (1998), Zhang Y (1998), Xue Y (1998), Xue Y (1998), Xue Y (1998), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	17
SNW1	0	WDR18	2	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	FUBP3	0	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	DDX3X	52	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCA4	19	NONO	3	affinity chromatography technology, pull down, affinity chromatography technology	Ito T (2008), Ito T (2008), Tando T (2010)	3
SMARCAD1	1	KHDRBS1	1	affinity chromatography technology	Rowbotham SP (2011)	1
CDC23	3	KDM1A	2	two hybrid	Weimann M (2013)	1
ANAPC1	1	CDC16	2	biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Sumara I (2000), Hutchins JR (2010), Havugimana PC (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	6
ZNF785	0	GTF3C2	2	affinity chromatography technology	Huttlin EL (2017)	1
CBX3	1	XRCC6	3	affinity chromatography technology	Rosnoblet C (2011)	1
ZNF211	0	SMARCAD1	1	affinity chromatography technology	Huttlin EL (2017)	1
SMARCAD1	1	RUVBL2	4	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCAD1	1	ZNF460	4	affinity chromatography technology	Rowbotham SP (2011)	1
PCBP1	2	MATR3	2	two hybrid	Lim J (2006)	1
SMARCAD1	1	SMARCC1	5	affinity chromatography technology	Rowbotham SP (2011)	1
HDAC1	4	E2F6	2	affinity chromatography technology, affinity chromatography technology	Hein MY (2015), Huttlin EL (2017)	2
FOXL1	0	YY1	7	affinity chromatography technology	Li X (2015)	1
CPSF2	2	SYMPK	3	affinity chromatography technology, biochemical, affinity chromatography technology	Kolev NG (2008), Wan C (2015), Hein MY (2015)	3
CDC5L	2	SMARCC2	9	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	RFC5	2	affinity chromatography technology	Emdal KB (2015)	1
SNW1	0	WDR33	3	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	CDC23	3	affinity chromatography technology	Rowbotham SP (2011)	1
MTA2	1	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical	Yao YL (2003), Yao YL (2003), Hakimi MA (2003), Zhang Y (1999), Banach-Orlowska M (2009), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Wang Y (2009), Fu J (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	14
SMARCAD1	1	GTF3C2	2	affinity chromatography technology	Rowbotham SP (2011)	1
NONO	3	PTBP1	2	pull down	Hall-Pogar T (2007)	1
SMARCAD1	1	NUMA1	10	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPM	1	SF3B3	4	biochemical	Havugimana PC (2012)	1
EHMT2	4	ZNF785	0	two hybrid	Rolland T (2014)	1
FOXL1	0	SMARCAD1	1	affinity chromatography technology	Li X (2015)	1
DDX3X	52	U2AF2	7	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	RING1	2	affinity chromatography technology	Rowbotham SP (2011)	1
SF3B2	7	KDM1A	2	affinity chromatography technology, two hybrid	Weimann M (2013), Weimann M (2013)	2
YY1	7	RUVBL2	4	biochemical, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wu S (2007), Wu S (2007), Wu S (2007), Cai Y (2007), Cai Y (2007), Vella P (2011), Huttlin EL (2017), Hauri S (2016)	8
SNW1	0	U2AF2	7	affinity chromatography technology, affinity chromatography technology	Lleres D (2010), Whisenant TC (2015)	2
NTRK1	1	PRPF19	2	affinity chromatography technology	Emdal KB (2015)	1
SNW1	0	SMC3	16	affinity chromatography technology	Lleres D (2010)	1
SMARCAD1	1	PCNA	0	pull down, fluorescent resonance energy transfe	Rowbotham SP (2011), Rowbotham SP (2011)	2
MSH6	2	PRKDC	12	affinity chromatography technology	Shahi A (2011)	1
CDC5L	2	ANAPC2	0	affinity chromatography technology	Lleres D (2010)	1
PELP1	3	HDAC2	1	affinity chromatography technology, imaging technique	Choi YB (2004), Choi YB (2004)	2
SMARCA4	19	SIN3A	13	biochemical, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Sif S (2001), Sif S (2001), Kuzmichev A (2002), Kuzmichev A (2002), Qiu Z (2008), Xu Z (2006), Pal S (2003), Pal S (2003)	8
CDC5L	2	DHX9	3	biochemical	Wan C (2015)	1
DDX17	2	HNRNPK	4	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
XRCC6	3	ILF3	5	affinity chromatography technology, affinity chromatography technology	Shamanna RA (2011), Shamanna RA (2011)	2
SNRPD3	0	HNRNPR	3	biochemical	Wan C (2015)	1
CPSF3	5	POLR1E	3	biochemical	Havugimana PC (2012)	1
NONO	3	SMARCB1	1	pull down	Ito T (2008)	1
HDAC1	4	MTA2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Yao YL (2003), You A (2001), Zhang Y (1999), Zhang Y (1999), Yasui D (2002), Banach-Orlowska M (2009), Banach-Orlowska M (2009), Cui Y (2006), Pflum MK (2001), Feng Q (2001), Humphrey GW (2001), Humphrey GW (2001), Humphrey GW (2001), Zhang Y (1998), Terhune SS (2010), Opsahl JA (2010), Wang Y (2009), Cui S (2011), Havugimana PC (2012), Bantscheff M (2011), Joshi P (2013), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017), Boldt K (2016)	27
HNRNPK	4	ILF3	5	biochemical	Havugimana PC (2012)	1
HNRNPL	3	ILF3	5	affinity chromatography technology, pull down, affinity chromatography technology	Yao P (2013), Yao P (2013), Yao P (2013)	3
PRKDC	12	ANAPC2	0	affinity chromatography technology, affinity chromatography technology	Shang ZF (2015), Shang ZF (2015)	2
SMARCAD1	1	PRKDC	12	affinity chromatography technology	Rowbotham SP (2011)	1
ANP32A	3	DMAP1	2	biochemical	Wan C (2015)	1
CDC5L	2	WDR18	2	biochemical, affinity chromatography technology	Havugimana PC (2012), Lleres D (2010)	2
SNW1	0	DHX9	3	affinity chromatography technology	Lleres D (2010)	1
HNRNPM	1	MTA2	1	biochemical	Havugimana PC (2012)	1
SMARCAD1	1	RFC4	1	affinity chromatography technology	Rowbotham SP (2011)	1
ARID2	5	SMARCB1	1	affinity chromatography technology, affinity chromatography technology	Yan Z (2005), Yan Z (2005)	2
SMARCE1	1	SMARCC1	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Zhao K (1998), Hu K (2006), Ryme J (2009), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Kaeser MD (2008), Chen J (2005), Chen J (2005), Keppler BR (2010), Mak AB (2010), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	15
ANAPC2	0	ANAPC5	2	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Gmachl M (2000), Vodermaier HC (2003), Vodermaier HC (2003)	4
U2AF2	7	SF3B2	7	affinity chromatography technology, affinity chromatography technology	Whisenant TC (2015), Huttlin EL (2017)	2
TMPO	0	MATR3	2	affinity chromatography technology	Brady GF (2018)	1
ZNF550	3	RBAK	3	affinity chromatography technology	Huttlin EL (2017)	1
SNW1	0	HNRNPM	1	affinity chromatography technology	Lleres D (2010)	1
HDAC1	4	NONO	3	imaging technique, affinity chromatography technology, affinity chromatography technology	Dong X (2007), Liu L (2011), Zhang C (2008)	3
ANAPC5	2	CDC23	3	biochemical, affinity chromatography technology	Havugimana PC (2012), Hein MY (2015)	2
KDM1A	2	PELP1	3	affinity chromatography technology, pull down, imaging technique, imaging technique	Nair SS (2010), Nair SS (2010), Nair SS (2010), Nair SS (2010)	4
HNRNPL	3	MTA3	3	affinity chromatography technology	Fei T (2017)	1
PRKDC	12	ILF3	5	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Ting NS (1998), Ting NS (1998), Shamanna RA (2011), Shamanna RA (2011)	4
SMARCAD1	1	SF3B2	7	affinity chromatography technology	Rowbotham SP (2011)	1
U2AF2	7	RUVBL1	2	affinity chromatography technology	Whisenant TC (2015)	1
NTRK1	1	DDX17	2	affinity chromatography technology	Emdal KB (2015)	1
ZNF816	0	ZC3H18	4	affinity chromatography technology	Huttlin EL (2017)	1
CDC23	3	ANAPC7	2	biochemical, affinity chromatography technology, affinity chromatography technology	Wan C (2015), Hein MY (2015), Boldt K (2016)	3
SMARCAD1	1	PRPF19	2	affinity chromatography technology	Rowbotham SP (2011)	1
RUVBL2	4	PCBP1	2	affinity chromatography technology	Jeronimo C (2007)	1
RAD50	3	MSH2	4	biochemical	Wang Y (2000)	1
CPSF3	5	WDR33	3	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Hein MY (2015)	3
MATR3	2	ILF3	5	affinity chromatography technology	Hein MY (2015)	1
DHX9	3	KHDRBS1	1	affinity chromatography technology, pull down, two hybrid, two hybrid	Reddy TR (2000), Reddy TR (2000), Hegele A (2012), Hegele A (2012)	4
SMARCC2	9	HDAC2	1	affinity chromatography technology	Battaglioli E (2002)	1
SF3B3	4	SRSF1	0	biochemical	Havugimana PC (2012)	1
TMPO	0	PTBP1	2	affinity chromatography technology	Brady GF (2018)	1
ZNF324B	1	ZNF324	1	affinity chromatography technology	Huttlin EL (2017)	1
CDC27	2	PCNA	0	affinity chromatography technology	Williamson A (2011)	1
MTA3	3	HDAC2	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Fujita N (2003), Bantscheff M (2011), Bantscheff M (2011), Joshi P (2013), Wan C (2015)	5
SMARCA5	4	SMARCC2	9	biochemical	Havugimana PC (2012)	1
ZNF214	1	ZC3H18	4	affinity chromatography technology	Huttlin EL (2017)	1
NTRK1	1	PCNA	0	affinity chromatography technology	Emdal KB (2015)	1
SNW1	0	HNRNPK	4	affinity chromatography technology	Lleres D (2010)	1
HNRNPK	4	HNRNPD	3	two hybrid, two hybrid, affinity chromatography technology	Hegele A (2012), Hegele A (2012), Hein MY (2015)	3
CDC5L	2	SMC3	16	affinity chromatography technology	Lleres D (2010)	1
HNRNPK	4	GTF3C4	0	biochemical	Havugimana PC (2012)	1
HNRNPH1	3	HNRNPL	3	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
NTRK1	1	RAD50	3	affinity chromatography technology	Emdal KB (2015)	1
DDX17	2	HNRNPL	3	biochemical	Wan C (2015)	1
MTA2	1	SIN3A	13	affinity chromatography technology, affinity chromatography technology	Yao YL (2003), Pflum MK (2001)	2
RFC4	1	RFC5	2	two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, pull down, two hybrid, biochemical, affinity chromatography technology	Rual JF (2005), Cai J (1997), Cai J (1998), Ellison V (1998), Havugimana PC (2012), Uhlmann F (1997), Rolland T (2014), Wan C (2015), Huttlin EL (2017)	9
SMARCAD1	1	SMARCA5	4	affinity chromatography technology	Rowbotham SP (2011)	1
SMARCA5	4	BAZ1A	5	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, pull down, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Bochar DA (2000), Bochar DA (2000), Poot RA (2000), Poot RA (2000), Bozhenok L (2002), Bozhenok L (2002), Yasui D (2002), Yasui D (2002), Hakimi MA (2002), LeRoy G (2000), LeRoy G (2000), LeRoy G (2000), Klement K (2014), Klement K (2014)	14
USP7	14	SF3B3	4	affinity chromatography technology	Bhattacharya S (2015)	1
NTRK1	1	ANAPC1	1	affinity chromatography technology	Emdal KB (2015)	1
SMARCA4	19	SMARCC2	9	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Wang W (1996), Otsuki T (2001), Zhao K (1998), Kaeser MD (2008), Kaeser MD (2008), Pal S (2003), Trotter KW (2008), Tando T (2010), Mak AB (2010), Nishimoto N (2012), Nishimoto N (2012), Havugimana PC (2012), Wan C (2015), Dallas PB (1998), Huttlin EL (2017)	15
SMC3	16	MSH6	2	biochemical	Wan C (2015)	1
HNRNPM	1	PRPF19	2	biochemical	Havugimana PC (2012)	1
SNW1	0	KHDRBS1	1	affinity chromatography technology	Lleres D (2010)	1
NTRK1	1	ZC3H18	4	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	U2AF2	7	affinity chromatography technology	Rowbotham SP (2011)	1
MATR3	2	HNRNPM	1	affinity chromatography technology	Hein MY (2015)	1
HNRNPH1	3	USP7	14	biochemical	Havugimana PC (2012)	1
SMARCA4	19	SMARCD2	1	affinity chromatography technology, biochemical, biochemical	Pal S (2003), Havugimana PC (2012), Wan C (2015)	3
U2AF2	7	HNRNPD	3	two hybrid, two hybrid, affinity chromatography technology	Hegele A (2012), Hegele A (2012), Whisenant TC (2015)	3
FOXL1	0	MDN1	19	affinity chromatography technology	Li X (2015)	1
RFC2	0	RFC3	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
NTRK1	1	HNRNPK	4	affinity chromatography technology	Emdal KB (2015)	1
DDX5	2	HDAC2	1	affinity chromatography technology, affinity chromatography technology	Mooney SM (2010), Mooney SM (2010)	2
SMARCAD1	1	PBRM1	5	affinity chromatography technology	Rowbotham SP (2011)	1
NTRK1	1	HDAC2	1	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	HNRNPM	1	affinity chromatography technology	Emdal KB (2015)	1
PCBP1	2	TRIM28	1	affinity chromatography technology	Zhang MP (2017)	1
DDX17	2	DDX5	2	affinity chromatography technology, affinity chromatography technology, biochemical, two hybrid, two hybrid, biochemical, affinity chromatography technology	Mooney SM (2010), Mooney SM (2010), Havugimana PC (2012), Hegele A (2012), Hegele A (2012), Kristensen AR (2012), Huttlin EL (2017)	7
KIF13A	3	SMARCAD1	1	biochemical	Kristensen AR (2012)	1
NTRK1	1	GTF3C2	2	affinity chromatography technology	Emdal KB (2015)	1
SMARCAD1	1	BEND3	4	affinity chromatography technology	Rowbotham SP (2011)	1
ILF3	5	LMNB1	1	biochemical	Havugimana PC (2012)	1
NTRK1	1	SF3B2	7	affinity chromatography technology	Emdal KB (2015)	1
SMARCE1	1	ARID2	5	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kaeser MD (2008), Kaeser MD (2008), Yan Z (2005), Yan Z (2005), Mak AB (2010), Huttlin EL (2015), Huttlin EL (2017)	7
U2AF2	7	HNRNPL	3	affinity chromatography technology, affinity chromatography technology	Whisenant TC (2015), Fei T (2017)	2
TRIM28	1	SMARCA4	19	affinity chromatography technology	Seki Y (2010)	1
SMARCB1	1	SIN3A	13	biochemical, pull down, affinity chromatography technology	Sif S (2001), Pal S (2003), Nakamura T (2002)	3
HDAC2	1	SIN3A	13	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Zhang Y (2003), Fleischer TC (2003), Fleischer TC (2003), Hakimi MA (2003), Yang L (2003), Laherty CD (1997), Zhang Y (2002), Tong JK (1998), Zhang Y (2005), Nakamura T (2002), Sekhavat A (2007), Zou J (2004), Sun JM (2007), Xue Y (1998), Tsai SC (2002), Brandl A (2012), Bantscheff M (2011), Joshi P (2013), Wan C (2015), Hsu DS (2014)	20
NTRK1	1	SMARCC1	5	affinity chromatography technology	Emdal KB (2015)	1
TMPO	0	PCBP1	2	affinity chromatography technology	Brady GF (2018)	1
RFC2	0	PRKDC	12	biochemical	Kristensen AR (2012)	1
NR2F2	4	HDAC1	4	pull down, pull down, genetic interference	Smirnov DA (2000), Smirnov DA (2000), Smirnov DA (2000)	3
GTF3C2	2	GTF3C1	11	affinity chromatography technology, biochemical	Sinn E (1995), Havugimana PC (2012)	2
NTRK1	1	DHX9	3	affinity chromatography technology	Emdal KB (2015)	1
SMARCE1	1	HDAC2	1	affinity chromatography technology	Battaglioli E (2002)	1
SMARCAD1	1	ILF3	5	affinity chromatography technology	Rowbotham SP (2011)	1
HNRNPH1	3	HNRNPR	3	biochemical	Havugimana PC (2012)	1
DMAP1	2	ACTL6A	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Doyon Y (2004), Doyon Y (2004), Cheng J (2017)	3