PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000320152	[[25137535, 25138820], [25140316, 25140393], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241533]]	[[25138772, 25138820], [25140316, 25140393], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241504]]
ENST00000376378	[[25138635, 25138820], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241513]]	[[25138800, 25138820], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241504]]
ENST00000376376	[[25197229, 25197614], [25226112, 25226296], [25231258, 25231365], [25241456, 25241521]]	[[25197431, 25197614], [25226112, 25226296], [25231258, 25231365], [25241456, 25241504]]
NM_020200	[[25137535, 25138820], [25140316, 25140393], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241573]]	[[25138772, 25138820], [25140316, 25140393], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241504]]
NM_001282786	[[25137535, 25138820], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241573]]	[[25138800, 25138820], [25144246, 25144293], [25145841, 25145924], [25147320, 25147338], [25160926, 25160992], [25226112, 25226296], [25231258, 25231365], [25241456, 25241504]]

Promoter

Chrom	Start	End	Description
chr10	25241499	25241541	CAGE_peak_1_at_PRTFDC1_5end
chr10	25241660	25241696	CAGE_peak_3_at_PRTFDC1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I024974	24974570	24975801	0.89	[{'connected_gene': 'THNSL1', 'score': 16.38}, {'connected_gene': 'PRTFDC1', 'score': 12.12}, {'connected_gene': 'ENKUR', 'score': 10.29}]
chr10	GH10I024988	24988872	24989021	0.72	[{'connected_gene': 'THNSL1', 'score': 16.19}, {'connected_gene': 'ENKUR', 'score': 11.66}, {'connected_gene': 'ARHGAP21', 'score': 10.97}, {'connected_gene': 'PRTFDC1', 'score': 0.28}]
chr10	GH10I024985	24985032	24985181	0.4	[{'connected_gene': 'THNSL1', 'score': 16.26}, {'connected_gene': 'ENKUR', 'score': 11.65}, {'connected_gene': 'ARHGAP21', 'score': 10.98}, {'connected_gene': 'PRTFDC1', 'score': 0.29}]
chr10	GH10I024962	24962277	24964414	1	[{'connected_gene': 'THNSL1', 'score': 10.22}, {'connected_gene': 'ENKUR', 'score': 10.14}, {'connected_gene': 'PRTFDC1', 'score': 0.44}]
chr10	GH10I024857	24857304	24859740	0.52	[{'connected_gene': 'ARHGAP21', 'score': 11.42}, {'connected_gene': 'THNSL1', 'score': 5.83}, {'connected_gene': 'ENSG00000228667', 'score': 0.44}, {'connected_gene': 'LOC105376456', 'score': 0.18}, {'connected_gene': 'PRTFDC1', 'score': 0.15}]
chr10	GH10I024790	24790788	24790963	0.77	[{'connected_gene': 'ARHGAP21', 'score': 4.51}, {'connected_gene': 'PRTFDC1', 'score': 1.53}, {'connected_gene': 'THNSL1', 'score': 1.39}, {'connected_gene': 'GPR158', 'score': 1.27}, {'connected_gene': 'LOC105376456', 'score': 0.39}, {'connected_gene': 'ENSG00000228667', 'score': 0.18}, {'connected_gene': 'GC10P024495', 'score': 0.06}]
chr10	GH10I024929	24929082	24929555	0.92	[{'connected_gene': 'ARHGAP21', 'score': 20.56}, {'connected_gene': 'PRTFDC1', 'score': 12.47}, {'connected_gene': 'GC10M024909', 'score': 0.34}, {'connected_gene': 'RN7SKP241', 'score': 0.34}, {'connected_gene': 'ENSG00000273107', 'score': 0.34}]
chr10	GH10I024828	24828592	24828616	0.22	[{'connected_gene': 'ARHGAP21', 'score': 12.85}, {'connected_gene': 'PRTFDC1', 'score': 11.45}, {'connected_gene': 'ENSG00000228667', 'score': 0.28}, {'connected_gene': 'LOC105376456', 'score': 0.23}]
chr10	GH10I024914	24914272	24914421	0.2	[{'connected_gene': 'ARHGAP21', 'score': 10.94}, {'connected_gene': 'GC10M024909', 'score': 0.44}, {'connected_gene': 'RN7SKP241', 'score': 0.44}, {'connected_gene': 'PRTFDC1', 'score': 0.28}, {'connected_gene': 'ENSG00000273107', 'score': 0.28}]
chr10	GH10I024915	24915532	24915681	0.54	[{'connected_gene': 'ARHGAP21', 'score': 10.94}, {'connected_gene': 'GC10M024909', 'score': 0.44}, {'connected_gene': 'RN7SKP241', 'score': 0.44}, {'connected_gene': 'PRTFDC1', 'score': 0.28}, {'connected_gene': 'ENSG00000273107', 'score': 0.28}]
chr10	GH10I024956	24956691	24959763	1.49	[{'connected_gene': 'PRTFDC1', 'score': 7.17}, {'connected_gene': 'THNSL1', 'score': 4.81}, {'connected_gene': 'ARHGAP21', 'score': 2.67}, {'connected_gene': 'GPR158', 'score': 1.23}]
chr10	GH10I024951	24951092	24954480	2.44	[{'connected_gene': 'PRTFDC1', 'score': 566.48}, {'connected_gene': 'ENSG00000273107', 'score': 550.77}, {'connected_gene': 'THNSL1', 'score': 2.08}, {'connected_gene': 'GPR158', 'score': 1.97}, {'connected_gene': 'ARHGAP21', 'score': 1.68}, {'connected_gene': 'GC10M024909', 'score': 0.26}, {'connected_gene': 'RN7SKP241', 'score': 0.26}]
chr10	GH10I024900	24900175	24903727	1.61	[{'connected_gene': 'PRTFDC1', 'score': 21.2}, {'connected_gene': 'ARHGAP21', 'score': 11.28}, {'connected_gene': 'GC10M024909', 'score': 0.44}, {'connected_gene': 'RN7SKP241', 'score': 0.44}, {'connected_gene': 'ENSG00000228667', 'score': 0.29}]
chr10	GH10I024920	24920482	24923253	1.39	[{'connected_gene': 'PRTFDC1', 'score': 10.42}, {'connected_gene': 'ARHGAP21', 'score': 9.44}, {'connected_gene': 'GC10M024909', 'score': 0.39}, {'connected_gene': 'RN7SKP241', 'score': 0.39}, {'connected_gene': 'ENSG00000273107', 'score': 0.29}]
chr10	GH10I024731	24731399	24732808	0.31	[{'connected_gene': 'PRTFDC1', 'score': 11.88}, {'connected_gene': 'ARHGAP21', 'score': 0.44}, {'connected_gene': 'LOC105376456', 'score': 0.25}, {'connected_gene': 'GC10P024495', 'score': 0.07}]
chr10	GH10I024825	24825156	24826801	0.85	[{'connected_gene': 'PRTFDC1', 'score': 11.45}, {'connected_gene': 'ARHGAP21', 'score': 10.13}, {'connected_gene': 'ENSG00000228667', 'score': 0.26}, {'connected_gene': 'LOC105376456', 'score': 0.25}]
chr10	GH10I024762	24762172	24763579	0.88	[{'connected_gene': 'PRTFDC1', 'score': 11.83}, {'connected_gene': 'ARHGAP21', 'score': 11.56}, {'connected_gene': 'LOC105376456', 'score': 0.37}, {'connected_gene': 'GC10P024495', 'score': 0.06}]
chr10	GH10I024622	24622501	24623787	0.52	[{'connected_gene': 'PRTFDC1', 'score': 11.42}, {'connected_gene': 'GC10P024641', 'score': 0.37}, {'connected_gene': 'PIR59453', 'score': 0.29}, {'connected_gene': 'ARHGAP21', 'score': 0.15}, {'connected_gene': 'GC10P024495', 'score': 0.13}]
chr10	GH10I024944	24944151	24946342	1.26	[{'connected_gene': 'PRTFDC1', 'score': 0.44}, {'connected_gene': 'ENSG00000273107', 'score': 0.44}, {'connected_gene': 'GC10M024909', 'score': 0.28}, {'connected_gene': 'RN7SKP241', 'score': 0.28}]
chr10	GH10I024896	24896426	24898400	1.1	[{'connected_gene': 'PRTFDC1', 'score': 16.9}, {'connected_gene': 'GC10M024909', 'score': 0.39}, {'connected_gene': 'RN7SKP241', 'score': 0.39}, {'connected_gene': 'ENSG00000228667', 'score': 0.31}]
chr10	GH10I024930	24930552	24930641	0.89	[{'connected_gene': 'PRTFDC1', 'score': 10.85}, {'connected_gene': 'GC10M024909', 'score': 0.34}, {'connected_gene': 'RN7SKP241', 'score': 0.34}, {'connected_gene': 'ENSG00000273107', 'score': 0.34}]
chr10	GH10I024893	24893852	24895390	0.69	[{'connected_gene': 'PRTFDC1', 'score': 5.27}, {'connected_gene': 'GC10M024909', 'score': 0.39}, {'connected_gene': 'RN7SKP241', 'score': 0.39}, {'connected_gene': 'ENSG00000228667', 'score': 0.31}]
chr10	GH10I024947	24947296	24948053	1.1	[{'connected_gene': 'PRTFDC1', 'score': 7.21}, {'connected_gene': 'ENSG00000273107', 'score': 0.44}, {'connected_gene': 'GC10M024909', 'score': 0.28}, {'connected_gene': 'RN7SKP241', 'score': 0.28}]
chr10	GH10I024934	24934460	24936846	0.52	[{'connected_gene': 'PRTFDC1', 'score': 10.91}, {'connected_gene': 'ENSG00000273107', 'score': 0.37}, {'connected_gene': 'GC10M024909', 'score': 0.31}, {'connected_gene': 'RN7SKP241', 'score': 0.31}]
chr10	GH10I024888	24888960	24890712	0.46	[{'connected_gene': 'PRTFDC1', 'score': 6.42}, {'connected_gene': 'GC10M024909', 'score': 0.37}, {'connected_gene': 'RN7SKP241', 'score': 0.37}, {'connected_gene': 'ENSG00000228667', 'score': 0.34}]
chr10	GH10I024992	24992809	24994219	0.59	[{'connected_gene': 'ENKUR', 'score': 18.42}, {'connected_gene': 'THNSL1', 'score': 11.8}, {'connected_gene': 'ARHGAP21', 'score': 10.97}, {'connected_gene': 'PRTFDC1', 'score': 0.28}]
chr10	GH10I024968	24968871	24970713	0.58	[{'connected_gene': 'ENKUR', 'score': 17.11}, {'connected_gene': 'THNSL1', 'score': 15.09}, {'connected_gene': 'PRTFDC1', 'score': 4.89}]
chr10	GH10I024819	24819725	24823400	0.97	[{'connected_gene': 'LOC105376456', 'score': 0.26}, {'connected_gene': 'ENSG00000228667', 'score': 0.25}, {'connected_gene': 'PRTFDC1', 'score': 0.12}]
chr10	GH10I024813	24813983	24816367	0.79	[{'connected_gene': 'LOC105376456', 'score': 0.28}, {'connected_gene': 'ENSG00000228667', 'score': 0.23}, {'connected_gene': 'PRTFDC1', 'score': 0.12}]
chr10	GH10I024866	24866367	24867846	1.34	[{'connected_gene': 'ENSG00000228667', 'score': 550.77}, {'connected_gene': 'THNSL1', 'score': 4.46}, {'connected_gene': 'ARHGAP21', 'score': 1.63}, {'connected_gene': 'PRTFDC1', 'score': 0.17}, {'connected_gene': 'LOC105376456', 'score': 0.17}]
chr10	GH10I024865	24865412	24865561	0.46	[{'connected_gene': 'ENSG00000228667', 'score': 0.77}, {'connected_gene': 'PRTFDC1', 'score': 0.17}, {'connected_gene': 'LOC105376456', 'score': 0.17}]
chr10	GH10I024909	24908440	24909981	0.98	[{'connected_gene': 'GC10M024909', 'score': 550.77}, {'connected_gene': 'RN7SKP241', 'score': 550.77}, {'connected_gene': 'ARHGAP21', 'score': 9.06}, {'connected_gene': 'PRTFDC1', 'score': 7.04}, {'connected_gene': 'ENSG00000273107', 'score': 0.26}]
chr10	GH10I024886	24886226	24888815	1.14	[{'connected_gene': 'ENSG00000228667', 'score': 0.37}, {'connected_gene': 'GC10M024909', 'score': 0.34}, {'connected_gene': 'RN7SKP241', 'score': 0.34}, {'connected_gene': 'PRTFDC1', 'score': 0.2}]
chr10	GH10I024871	24871914	24874321	1.07	[{'connected_gene': 'ENSG00000228667', 'score': 0.44}, {'connected_gene': 'GC10M024909', 'score': 0.28}, {'connected_gene': 'RN7SKP241', 'score': 0.28}, {'connected_gene': 'PRTFDC1', 'score': 0.18}]
chr10	GH10I024912	24912200	24912601	1.05	[{'connected_gene': 'GC10M024909', 'score': 0.77}, {'connected_gene': 'RN7SKP241', 'score': 0.77}, {'connected_gene': 'PRTFDC1', 'score': 0.26}, {'connected_gene': 'ENSG00000273107', 'score': 0.26}]
chr10	GH10I024908	24908072	24908221	0.4	[{'connected_gene': 'GC10M024909', 'score': 550.77}, {'connected_gene': 'RN7SKP241', 'score': 550.77}, {'connected_gene': 'PRTFDC1', 'score': 4.87}, {'connected_gene': 'ENSG00000228667', 'score': 0.26}]
chr10	GH10I024882	24882201	24883101	0.72	[{'connected_gene': 'ENSG00000228667', 'score': 0.37}, {'connected_gene': 'GC10M024909', 'score': 0.31}, {'connected_gene': 'RN7SKP241', 'score': 0.31}, {'connected_gene': 'PRTFDC1', 'score': 0.19}]
chr10	GH10I024891	24891972	24892161	0.88	[{'connected_gene': 'GC10M024909', 'score': 0.37}, {'connected_gene': 'RN7SKP241', 'score': 0.37}, {'connected_gene': 'ENSG00000228667', 'score': 0.34}, {'connected_gene': 'PRTFDC1', 'score': 0.21}]
chr10	GH10I024847	24847381	24847946	0.31	[{'connected_gene': 'ENSG00000228667', 'score': 0.37}, {'connected_gene': 'LOC105376456', 'score': 0.2}, {'connected_gene': 'PRTFDC1', 'score': 0.14}]
chr10	GH10I024849	24848309	24848546	0.2	[{'connected_gene': 'ENSG00000228667', 'score': 0.37}, {'connected_gene': 'LOC105376456', 'score': 0.19}, {'connected_gene': 'PRTFDC1', 'score': 0.14}]
chr10	GH10I024848	24848794	24852604	0.92	[{'connected_gene': 'ENSG00000273107', 'score': 4.37}, {'connected_gene': 'ENSG00000228667', 'score': 0.37}, {'connected_gene': 'LOC105376456', 'score': 0.19}, {'connected_gene': 'PRTFDC1', 'score': 0.15}]