PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000555685	[[44165624, 44166189], [44166602, 44166733], [44171338, 44171506], [44174277, 44174409], [44175905, 44176040]]	[[44166171, 44166189], [44166602, 44166733], [44171338, 44171506], [44174277, 44174409], [44175905, 44175996]]
ENST00000354280	[[44169264, 44170793], [44171338, 44171506], [44174277, 44174409], [44175905, 44176063]]	[[44170782, 44170793], [44171338, 44171506], [44174277, 44174409], [44175905, 44175996]]
ENST00000409554	[[44170471, 44170793], [44171338, 44171396], [44174277, 44174409], [44175905, 44176391]]	[[44171385, 44171396], [44174277, 44174409], [44175905, 44175996]]
ENST00000336443	[[44170483, 44170793], [44171338, 44171506], [44174277, 44175016]]	[[44170782, 44170793], [44171338, 44171506], [44174277, 44174452]]
ENST00000496898	[[44170483, 44174409], [44175905, 44175996]]	None
NM_020398	[[44169264, 44170793], [44171338, 44171506], [44174277, 44174409], [44175905, 44176065]]	[[44170782, 44170793], [44171338, 44171506], [44174277, 44174409], [44175905, 44175996]]
NM_001302861	[[44170483, 44170793], [44171338, 44171517], [44174277, 44174409], [44175905, 44176065]]	[[44171356, 44171517], [44174277, 44174409], [44175905, 44175996]]

Promoter

Chrom	Start	End	Description
chr20	44176013	44176045	CAGE_peak_1_at_SPINLW1-WFDC6_5end,CAGE_peak_1_at_SPINLW1_5end
chr20	44176060	44176067	CAGE_peak_2_at_SPINLW1-WFDC6_5end,CAGE_peak_2_at_SPINLW1_5end
chr20	44176288	44176335	CAGE_peak_3_at_SPINLW1-WFDC6_5end,CAGE_peak_3_at_SPINLW1_5end
chr20	44176392	44176402	CAGE_peak_4_at_SPINLW1-WFDC6_5end,CAGE_peak_4_at_SPINLW1_5end
chr20	44176418	44176425	CAGE_peak_5_at_SPINLW1-WFDC6_5end,CAGE_peak_5_at_SPINLW1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I045547	45547391	45547450	0.5	[{'connected_gene': 'EPPIN', 'score': 550.77}, {'connected_gene': 'EPPIN-WFDC6', 'score': 550.77}, {'connected_gene': 'HSPD1P21', 'score': 0.44}]
chr20	GH20I045546	45546182	45546351	0.54	[{'connected_gene': 'EPPIN', 'score': 550.77}, {'connected_gene': 'EPPIN-WFDC6', 'score': 550.77}, {'connected_gene': 'HSPD1P21', 'score': 0.44}]
chr20	GH20I045770	45770782	45771892	1.33	[{'connected_gene': 'WFDC3', 'score': 49.4}, {'connected_gene': 'WFDC13', 'score': 15.78}, {'connected_gene': 'SPINT5P', 'score': 11.34}, {'connected_gene': 'HNRNPA1P3', 'score': 11.32}, {'connected_gene': 'DNTTIP1', 'score': 11.22}, {'connected_gene': 'EPPIN', 'score': 10.26}, {'connected_gene': 'EPPIN-WFDC6', 'score': 10.26}, {'connected_gene': 'HSPD1P21', 'score': 10.25}, {'connected_gene': 'WFDC6', 'score': 10.25}, {'connected_gene': 'ENSG00000232135', 'score': 10.25}, {'connected_gene': 'PIGT', 'score': 9.33}, {'connected_gene': 'GC20P045773', 'score': 0.77}]
chr20	GH20I045765	45765113	45767693	0.31	[{'connected_gene': 'WFDC3', 'score': 34.91}, {'connected_gene': 'WFDC13', 'score': 16.34}, {'connected_gene': 'DNTTIP1', 'score': 15.53}, {'connected_gene': 'HNRNPA1P3', 'score': 11.34}, {'connected_gene': 'EPPIN', 'score': 10.26}, {'connected_gene': 'EPPIN-WFDC6', 'score': 10.26}, {'connected_gene': 'HSPD1P21', 'score': 10.26}, {'connected_gene': 'WFDC6', 'score': 10.26}, {'connected_gene': 'ENSG00000232135', 'score': 10.26}, {'connected_gene': 'SPINT3', 'score': 10.04}, {'connected_gene': 'WFDC10B', 'score': 9.67}, {'connected_gene': 'PIGT', 'score': 9.38}, {'connected_gene': 'PLTP', 'score': 5.41}, {'connected_gene': 'GC20P045773', 'score': 0.44}, {'connected_gene': 'SPINT5P', 'score': 0.37}]
chr20	GH20I045773	45773773	45776369	0.31	[{'connected_gene': 'GC20P045773', 'score': 550.77}, {'connected_gene': 'WFDC3', 'score': 70.67}, {'connected_gene': 'UBE2C', 'score': 10.41}, {'connected_gene': 'SNX21', 'score': 10.38}, {'connected_gene': 'TNNC2', 'score': 10.38}, {'connected_gene': 'EPPIN', 'score': 10.32}, {'connected_gene': 'EPPIN-WFDC6', 'score': 10.32}, {'connected_gene': 'HSPD1P21', 'score': 10.32}, {'connected_gene': 'WFDC6', 'score': 10.32}, {'connected_gene': 'ENSG00000232135', 'score': 10.32}, {'connected_gene': 'GC20P045779', 'score': 0.77}]