PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000451442	[[24943560, 24944658], [24945010, 24945034], [24949527, 24949720], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973278]]	[[24944448, 24944658], [24945010, 24945034], [24949527, 24949720], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973278]]
ENST00000217456	[[24943560, 24944658], [24949527, 24949720], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973615]]	[[24944448, 24944658], [24949527, 24949720], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973324]]
ENST00000447138	[[24943580, 24944658], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973360]]	[[24944636, 24944658], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973324]]
NM_020531	[[24943579, 24944658], [24949527, 24949720], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973425]]	[[24944448, 24944658], [24949527, 24949720], [24950161, 24950296], [24950832, 24951007], [24952095, 24952212], [24954280, 24954373], [24959402, 24959518], [24964538, 24964655], [24973229, 24973324]]

Promoter

Chrom	Start	End	Description
chr20	24954277	24954281	CAGE_peak_6_at_C20orf3_5end
chr20	24964628	24964647	CAGE_peak_3_at_C20orf3_5end
chr20	24964780	24964791	CAGE_peak_7_at_C20orf3_5end
chr20	24973265	24973274	CAGE_peak_4_at_C20orf3_5end
chr20	24973318	24973394	CAGE_peak_1_at_C20orf3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr20	GH20I024984	24984401	24986800	0.74	[{'connected_gene': 'CST7', 'score': 19.85}, {'connected_gene': 'ACSS1', 'score': 11.58}, {'connected_gene': 'APMAP', 'score': 7.23}, {'connected_gene': 'VN1R108P', 'score': 5.39}, {'connected_gene': 'VSX1', 'score': 4.39}, {'connected_gene': 'RNU6-1257P', 'score': 0.39}]
chr20	GH20I024948	24948589	24956969	1.91	[{'connected_gene': 'CST7', 'score': 573.09}, {'connected_gene': 'APMAP', 'score': 19.14}, {'connected_gene': 'ACSS1', 'score': 10.78}, {'connected_gene': 'VN1R108P', 'score': 5.63}, {'connected_gene': 'PYGB', 'score': 4.79}, {'connected_gene': 'PIR45392', 'score': 0.39}]
chr20	GH20I025022	25022420	25023512	0.72	[{'connected_gene': 'CST7', 'score': 12.39}, {'connected_gene': 'PIR53263', 'score': 0.37}, {'connected_gene': 'APMAP', 'score': 0.31}, {'connected_gene': 'ACSS1', 'score': 0.28}]
chr20	GH20I025019	25019767	25020288	0.2	[{'connected_gene': 'CST7', 'score': 7.11}, {'connected_gene': 'APMAP', 'score': 6.6}, {'connected_gene': 'PIR53263', 'score': 0.37}, {'connected_gene': 'ACSS1', 'score': 0.28}]
chr20	GH20I025024	25024738	25028196	0.46	[{'connected_gene': 'CST7', 'score': 11.84}, {'connected_gene': 'APMAP', 'score': 6.29}, {'connected_gene': 'PIR53263', 'score': 0.39}, {'connected_gene': 'ACSS1', 'score': 0.29}]
chr20	GH20I024969	24969346	24973202	0.38	[{'connected_gene': 'CST7', 'score': 19.04}, {'connected_gene': 'APMAP', 'score': 7.97}, {'connected_gene': 'VN1R108P', 'score': 5.39}, {'connected_gene': 'GC20P024974', 'score': 0.77}, {'connected_gene': 'PIR45392', 'score': 0.44}]
chr20	GH20I024996	24996762	24997732	0.4	[{'connected_gene': 'CST7', 'score': 14.75}, {'connected_gene': 'APMAP', 'score': 7.13}, {'connected_gene': 'PIR53263', 'score': 0.26}]
chr20	GH20I025000	25000025	25001254	1.22	[{'connected_gene': 'CST7', 'score': 8.08}, {'connected_gene': 'APMAP', 'score': 7.42}, {'connected_gene': 'PIR53263', 'score': 0.28}]
chr20	GH20I024994	24994465	24995514	1.27	[{'connected_gene': 'CST7', 'score': 18.95}, {'connected_gene': 'ZNF337', 'score': 15.75}, {'connected_gene': 'NINL', 'score': 10.09}, {'connected_gene': 'APMAP', 'score': 8.29}, {'connected_gene': 'PIR53263', 'score': 0.26}]
chr20	GH20I025029	25029938	25034673	1.74	[{'connected_gene': 'ACSS1', 'score': 568.29}, {'connected_gene': 'CST7', 'score': 12.29}, {'connected_gene': 'APMAP', 'score': 6.13}, {'connected_gene': 'FAM182B', 'score': 4.75}, {'connected_gene': 'PIR53263', 'score': 0.44}]
chr20	GH20I025013	25013482	25014311	0.2	[{'connected_gene': 'ACSS1', 'score': 12.37}, {'connected_gene': 'CST7', 'score': 10.77}, {'connected_gene': 'APMAP', 'score': 6.12}, {'connected_gene': 'PIR53263', 'score': 0.31}]
chr20	GH20I025006	25005265	25005454	0.66	[{'connected_gene': 'ACSS1', 'score': 12.15}, {'connected_gene': 'CST7', 'score': 8.06}, {'connected_gene': 'APMAP', 'score': 6.39}, {'connected_gene': 'PIR53263', 'score': 0.29}]
chr20	GH20I025005	25005600	25007136	0.2	[{'connected_gene': 'ACSS1', 'score': 12.15}, {'connected_gene': 'CST7', 'score': 10.65}, {'connected_gene': 'APMAP', 'score': 0.39}, {'connected_gene': 'PIR53263', 'score': 0.29}]
chr20	GH20I025007	25007929	25013070	0.65	[{'connected_gene': 'ACSS1', 'score': 12.37}, {'connected_gene': 'CST7', 'score': 12.12}, {'connected_gene': 'APMAP', 'score': 6.63}, {'connected_gene': 'PIR53263', 'score': 0.31}]
chr20	GH20I024977	24977107	24978495	0.56	[{'connected_gene': 'ACSS1', 'score': 10.87}, {'connected_gene': 'PYGB', 'score': 9.62}, {'connected_gene': 'APMAP', 'score': 6.74}, {'connected_gene': 'RNU6-1257P', 'score': 0.77}]
chr20	GH20I024987	24987405	24987554	1.07	[{'connected_gene': 'ACSS1', 'score': 11.58}, {'connected_gene': 'APMAP', 'score': 0.44}, {'connected_gene': 'RNU6-1257P', 'score': 0.39}]
chr20	GH20I024979	24979932	24980617	0.51	[{'connected_gene': 'ACSS1', 'score': 10.55}, {'connected_gene': 'APMAP', 'score': 8.02}, {'connected_gene': 'RNU6-1257P', 'score': 0.44}]
chr20	GH20I024988	24987731	24989054	0.89	[{'connected_gene': 'ACSS1', 'score': 11.58}, {'connected_gene': 'APMAP', 'score': 0.77}, {'connected_gene': 'RNU6-1257P', 'score': 0.39}]
chr20	GH20I025041	25041259	25044799	1.05	[{'connected_gene': 'ACSS1', 'score': 5.12}, {'connected_gene': 'APMAP', 'score': 4.88}, {'connected_gene': 'PIR53263', 'score': 0.77}]
chr20	GH20I024981	24981341	24982827	0.58	[{'connected_gene': 'ACSS1', 'score': 10.55}, {'connected_gene': 'RNU6-1257P', 'score': 0.44}, {'connected_gene': 'APMAP', 'score': 0.39}]
chr20	GH20I024989	24989063	24994234	2.27	[{'connected_gene': 'APMAP', 'score': 558.48}, {'connected_gene': 'CST7', 'score': 19.93}, {'connected_gene': 'ACSS1', 'score': 12.24}, {'connected_gene': 'VN1R108P', 'score': 5.39}, {'connected_gene': 'PYGB', 'score': 4.34}, {'connected_gene': 'RNU6-1257P', 'score': 0.37}]
chr20	GH20I025016	25016389	25019760	1.05	[{'connected_gene': 'APMAP', 'score': 19.25}, {'connected_gene': 'ACSS1', 'score': 12.39}, {'connected_gene': 'CST7', 'score': 10.09}, {'connected_gene': 'PIR53263', 'score': 0.34}]
chr20	GH20I025020	25020310	25021789	0.31	[{'connected_gene': 'APMAP', 'score': 6.76}, {'connected_gene': 'PIR53263', 'score': 0.37}, {'connected_gene': 'ACSS1', 'score': 0.28}]
chr20	GH20I025045	25045201	25045400	0.74	[{'connected_gene': 'APMAP', 'score': 5.17}, {'connected_gene': 'PIR53263', 'score': 0.44}, {'connected_gene': 'ACSS1', 'score': 0.39}]
chr20	GH20I024918	24918034	24918799	0.95	[{'connected_gene': 'APMAP', 'score': 6.55}, {'connected_gene': 'PIR56829', 'score': 0.77}, {'connected_gene': 'ENSG00000231015', 'score': 0.07}]
chr20	GH20I024999	24999600	24999995	0.38	[{'connected_gene': 'APMAP', 'score': 8.22}, {'connected_gene': 'PIR53263', 'score': 0.28}]
chr20	GH20I024998	24998865	24999014	0.4	[{'connected_gene': 'APMAP', 'score': 0.44}, {'connected_gene': 'PIR53263', 'score': 0.26}]
chr20	GH20I024933	24933993	24934771	0.31	[{'connected_gene': 'RNU6-1257P', 'score': 11.85}, {'connected_gene': 'ACSS1', 'score': 10.87}, {'connected_gene': 'APMAP', 'score': 6.58}, {'connected_gene': 'LOC105372578', 'score': 0.44}, {'connected_gene': 'CST7', 'score': 0.39}]
chr20	GH20I024929	24929482	24932760	0.94	[{'connected_gene': 'LOC105372578', 'score': 550.77}, {'connected_gene': 'CST7', 'score': 19.99}, {'connected_gene': 'RNU6-1257P', 'score': 11.84}, {'connected_gene': 'ACSS1', 'score': 10.87}, {'connected_gene': 'APMAP', 'score': 8.38}, {'connected_gene': 'VN1R108P', 'score': 5.41}]
chr20	GH20I024957	24957263	24966432	1.01	[{'connected_gene': 'PIR45392', 'score': 550.77}, {'connected_gene': 'CST7', 'score': 21.89}, {'connected_gene': 'APMAP', 'score': 11.15}, {'connected_gene': 'ACSS1', 'score': 10.79}, {'connected_gene': 'VN1R108P', 'score': 5.43}]
chr20	GH20I025035	25035078	25041194	1.08	[{'connected_gene': 'PIR53263', 'score': 550.77}, {'connected_gene': 'ACSS1', 'score': 17.02}, {'connected_gene': 'CST7', 'score': 6.78}, {'connected_gene': 'APMAP', 'score': 5.86}]
chr20	GH20I024966	24966936	24967310	0.42	[{'connected_gene': 'PIR45392', 'score': 0.77}, {'connected_gene': 'GC20P024974', 'score': 0.44}, {'connected_gene': 'APMAP', 'score': 0.31}]