PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000367771	[[169818771, 169822913], [169823410, 169824105], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858031], [169862928, 169863093]]	[[169822853, 169822913], [169823410, 169824105], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169857981]]
ENST00000367772	[[169821803, 169822913], [169823410, 169824105], [169824936, 169825098], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858031], [169862928, 169863076]]	[[169822853, 169822913], [169823410, 169824105], [169824936, 169825098], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169857981]]
ENST00000367770	[[169822214, 169822913], [169823410, 169824105], [169824936, 169825098], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858029]]	[[169822853, 169822913], [169823410, 169824105], [169824936, 169825098], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169857981]]
ENST00000423670	[[169823651, 169824105], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858031], [169863147, 169863408]]	[[169823651, 169824105], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169857981]]
ENST00000470238	[[169828259, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838269], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858031], [169862928, 169863093]]	None
NM_181093	[[169822214, 169822913], [169823410, 169824105], [169824936, 169825098], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858031], [169862928, 169863100]]	[[169822853, 169822913], [169823410, 169824105], [169824936, 169825098], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169857981]]
NM_020423	[[169822214, 169822913], [169823410, 169824105], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169858031], [169862928, 169863100]]	[[169822853, 169822913], [169823410, 169824105], [169828181, 169828353], [169831753, 169831938], [169833509, 169833649], [169836036, 169836114], [169838068, 169838180], [169839395, 169839498], [169842836, 169842893], [169845118, 169845232], [169847774, 169847960], [169857816, 169857981]]

Promoter

Chrom	Start	End	Description
chr1	169863016	169863109	CAGE_peak_1_at_SCYL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I170530	170530751	170533992	2.08	[{'connected_gene': 'GORAB', 'score': 564.18}, {'connected_gene': 'LOC101928650', 'score': 558.15}, {'connected_gene': 'C1orf112', 'score': 17.14}, {'connected_gene': 'SCYL3', 'score': 16.21}, {'connected_gene': 'PRRC2C', 'score': 16.07}, {'connected_gene': 'METTL18', 'score': 12.01}, {'connected_gene': 'RN7SL333P', 'score': 11.21}, {'connected_gene': 'ENSG00000271811', 'score': 7.03}]
chr1	GH01I169915	169915001	169915400	0.31	[{'connected_gene': 'METTL18', 'score': 34.09}, {'connected_gene': 'SCYL3', 'score': 12.18}, {'connected_gene': 'KIFAP3', 'score': 7.83}, {'connected_gene': 'GC01M169872', 'score': 0.34}, {'connected_gene': 'GC01P169942', 'score': 0.31}]
chr1	GH01I169916	169915740	169916070	0.82	[{'connected_gene': 'METTL18', 'score': 37.99}, {'connected_gene': 'SCYL3', 'score': 12.18}, {'connected_gene': 'GC01M169872', 'score': 0.34}, {'connected_gene': 'GC01P169942', 'score': 0.31}]
chr1	GH01I169688	169688301	169705691	1.4	[{'connected_gene': 'METTL18', 'score': 42.01}, {'connected_gene': 'C1orf112', 'score': 17.9}, {'connected_gene': 'SELP', 'score': 11.57}, {'connected_gene': 'F5', 'score': 11.47}, {'connected_gene': 'SELL', 'score': 10.04}, {'connected_gene': 'SCYL3', 'score': 6.95}, {'connected_gene': 'KIFAP3', 'score': 4.36}, {'connected_gene': 'ENSG00000230704', 'score': 4.33}, {'connected_gene': 'METTL11B', 'score': 2.5}, {'connected_gene': 'GC01M169692', 'score': 0.31}]
chr1	GH01I169793	169793917	169796209	2.07	[{'connected_gene': 'METTL18', 'score': 614.67}, {'connected_gene': 'C1orf112', 'score': 591.83}, {'connected_gene': 'SCYL3', 'score': 48.61}, {'connected_gene': 'RN7SL333P', 'score': 21.37}, {'connected_gene': 'KIFAP3', 'score': 8.5}]
chr1	GH01I169873	169873922	169875085	0.59	[{'connected_gene': 'METTL18', 'score': 44.0}, {'connected_gene': 'KIFAP3', 'score': 8.43}, {'connected_gene': 'RN7SL333P', 'score': 0.39}, {'connected_gene': 'SCYL3', 'score': 0.37}, {'connected_gene': 'GC01M169872', 'score': 0.34}]
chr1	GH01I169779	169779044	169782639	0.94	[{'connected_gene': 'METTL18', 'score': 39.88}, {'connected_gene': 'F5', 'score': 10.76}, {'connected_gene': 'CCDC181', 'score': 9.78}, {'connected_gene': 'SCYL3', 'score': 8.87}, {'connected_gene': 'LOC101928628', 'score': 0.37}, {'connected_gene': 'C1orf112', 'score': 0.13}]
chr1	GH01I169707	169707887	169712789	2.12	[{'connected_gene': 'SELL', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 40.93}, {'connected_gene': 'RN7SL333P', 'score': 27.73}, {'connected_gene': 'GORAB', 'score': 22.05}, {'connected_gene': 'SCYL3', 'score': 19.78}, {'connected_gene': 'C1orf112', 'score': 15.13}, {'connected_gene': 'GC01M169692', 'score': 0.39}]
chr1	GH01I169889	169889465	169895007	2.59	[{'connected_gene': 'SCYL3', 'score': 574.38}, {'connected_gene': 'METTL18', 'score': 51.72}, {'connected_gene': 'C1orf112', 'score': 25.15}, {'connected_gene': 'KIFAP3', 'score': 17.0}, {'connected_gene': 'BLZF1', 'score': 11.6}, {'connected_gene': 'RN7SL333P', 'score': 11.48}, {'connected_gene': 'GC01M169872', 'score': 0.77}]
chr1	GH01I169089	169089753	169096440	0.69	[{'connected_gene': 'SCYL3', 'score': 14.03}, {'connected_gene': 'C1orf112', 'score': 11.94}, {'connected_gene': 'RN7SL333P', 'score': 11.31}, {'connected_gene': 'METTL18', 'score': 11.03}, {'connected_gene': 'BLZF1', 'score': 10.33}, {'connected_gene': 'SELP', 'score': 10.01}, {'connected_gene': 'LINC00970', 'score': 0.44}, {'connected_gene': 'LOC101928596', 'score': 0.39}]
chr1	GH01I169917	169917737	169917801	0.24	[{'connected_gene': 'SCYL3', 'score': 12.18}, {'connected_gene': 'GC01M169872', 'score': 0.34}, {'connected_gene': 'GC01P169942', 'score': 0.34}]
chr1	GH01I169878	169878965	169879909	0.31	[{'connected_gene': 'KIFAP3', 'score': 7.31}, {'connected_gene': 'SCYL3', 'score': 0.39}, {'connected_gene': 'RN7SL333P', 'score': 0.37}, {'connected_gene': 'GC01M169872', 'score': 0.37}]
chr1	GH01I169584	169584601	169587000	1.6	[{'connected_gene': 'F5', 'score': 556.07}, {'connected_gene': 'SCYL3', 'score': 4.15}, {'connected_gene': 'BLZF1', 'score': 2.72}, {'connected_gene': 'SLC19A2', 'score': 2.61}, {'connected_gene': 'GC01P169565', 'score': 0.34}]
chr1	GH01I169571	169571508	169573157	1.01	[{'connected_gene': 'F5', 'score': 11.09}, {'connected_gene': 'C1orf112', 'score': 9.9}, {'connected_gene': 'METTL18', 'score': 9.8}, {'connected_gene': 'SELE', 'score': 9.66}, {'connected_gene': 'SCYL3', 'score': 1.4}, {'connected_gene': 'GC01P169565', 'score': 0.44}]
chr1	GH01I169874	169873720	169873869	0.57	[{'connected_gene': 'RN7SL333P', 'score': 0.39}, {'connected_gene': 'SCYL3', 'score': 0.34}, {'connected_gene': 'GC01M169872', 'score': 0.34}]
chr1	GH01I169941	169941255	169943938	1.11	[{'connected_gene': 'GC01P169942', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 47.88}, {'connected_gene': 'C1orf112', 'score': 24.36}, {'connected_gene': 'GORAB', 'score': 12.7}, {'connected_gene': 'SCYL3', 'score': 12.48}, {'connected_gene': 'RN7SL333P', 'score': 10.1}, {'connected_gene': 'GC01M169872', 'score': 0.25}, {'connected_gene': 'KIFAP3', 'score': 0.11}]
chr1	GH01I169721	169721757	169724999	0.43	[{'connected_gene': 'GC01M169692', 'score': 550.77}, {'connected_gene': 'METTL18', 'score': 41.62}, {'connected_gene': 'F5', 'score': 10.78}, {'connected_gene': 'C1orf112', 'score': 10.59}, {'connected_gene': 'SCYL3', 'score': 6.62}, {'connected_gene': 'SELL', 'score': 0.39}, {'connected_gene': 'SELE', 'score': 0.26}]
chr1	GH01I170660	170660990	170671322	2.57	[{'connected_gene': 'ENSG00000271811', 'score': 572.64}, {'connected_gene': 'PRRX1', 'score': 565.98}, {'connected_gene': 'PRRC2C', 'score': 13.02}, {'connected_gene': 'SCYL3', 'score': 11.18}, {'connected_gene': 'RN7SL333P', 'score': 10.47}]
chr1	GH01I169308	169308383	169310319	1.11	[{'connected_gene': 'ENSG00000235575', 'score': 550.77}, {'connected_gene': 'NME7', 'score': 32.1}, {'connected_gene': 'SCYL3', 'score': 22.68}, {'connected_gene': 'RN7SL333P', 'score': 16.76}, {'connected_gene': 'METTL18', 'score': 14.47}, {'connected_gene': 'C1orf112', 'score': 12.02}, {'connected_gene': 'ATP1B1', 'score': 9.81}, {'connected_gene': 'LOC101928596', 'score': 9.81}, {'connected_gene': 'GC01P169297', 'score': 0.37}, {'connected_gene': 'GC01P169294', 'score': 0.37}, {'connected_gene': 'GC01P169296', 'score': 0.37}]
chr1	GH01I169482	169482741	169488400	2.32	[{'connected_gene': 'ENSG00000213062', 'score': 558.34}, {'connected_gene': 'GC01P169486', 'score': 550.77}, {'connected_gene': 'SLC19A2', 'score': 550.77}, {'connected_gene': 'SCYL3', 'score': 24.14}, {'connected_gene': 'METTL18', 'score': 17.93}, {'connected_gene': 'RN7SL333P', 'score': 16.78}, {'connected_gene': 'NME7', 'score': 13.69}, {'connected_gene': 'C1orf112', 'score': 12.07}, {'connected_gene': 'CCDC181', 'score': 10.78}, {'connected_gene': 'PIR61656', 'score': 0.44}]