PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000394532	[[64037301, 64037809], [64039084, 64039275], [64051653, 64052111]]	[[64037680, 64037809], [64039084, 64039275], [64051653, 64051840]]
ENST00000309032	[[64037305, 64037809], [64039084, 64039275], [64051653, 64051848], [64052102, 64052141]]	[[64037680, 64037809], [64039084, 64039275], [64051653, 64051840]]
ENST00000544785	[[64037472, 64037809], [64051653, 64051841]]	[[64037522, 64037809]]
ENST00000394531	[[64037727, 64037809], [64039084, 64039275], [64044375, 64044515], [64051653, 64051848], [64052102, 64052125]]	[[64039110, 64039275], [64044375, 64044515], [64051653, 64051840]]
ENST00000493798	[[64037740, 64037809], [64039084, 64039340]]	[[64037740, 64037809], [64039084, 64039207]]
ENST00000492141	[[64037779, 64037809], [64039084, 64039275], [64040190, 64040328]]	[[64037779, 64037809], [64039084, 64039207]]
ENST00000544271	[[64044232, 64044515], [64051653, 64051848], [64052102, 64052176]]	None
NM_004322	[[64037299, 64037809], [64039084, 64039275], [64051653, 64052176]]	[[64037680, 64037809], [64039084, 64039275], [64051653, 64051840]]
NM_032989	[[64037299, 64037809], [64039084, 64039275], [64051653, 64051848], [64052102, 64052176]]	[[64037680, 64037809], [64039084, 64039275], [64051653, 64051840]]

Promoter

Chrom	Start	End	Description
chr11	64052012	64052026	CAGE_peak_3_at_BAD_5end
chr11	64052114	64052210	CAGE_peak_1_at_BAD_5end
chr11	64052523	64052542	CAGE_peak_6_at_BAD_5end
chr11	64052561	64052571	CAGE_peak_12_at_BAD_5end
chr11	64052579	64052597	CAGE_peak_5_at_BAD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I064354	64354689	64361259	2.72	[{'connected_gene': 'RPS6KA4', 'score': 559.68}, {'connected_gene': 'LOC102723878', 'score': 20.26}, {'connected_gene': 'PLCB3', 'score': 13.55}, {'connected_gene': 'ENSG00000231680', 'score': 6.78}, {'connected_gene': 'TRPT1', 'score': 4.82}, {'connected_gene': 'MARK2', 'score': 4.13}, {'connected_gene': 'PPP1R14B', 'score': 3.69}, {'connected_gene': 'ESRRA', 'score': 3.36}, {'connected_gene': 'PRDX5', 'score': 2.81}, {'connected_gene': 'TRMT112', 'score': 2.76}, {'connected_gene': 'BAD', 'score': 2.56}, {'connected_gene': 'NUDT22', 'score': 2.25}, {'connected_gene': 'CDC42BPG', 'score': 1.9}, {'connected_gene': 'FKBP2', 'score': 1.29}, {'connected_gene': 'GC11M064349', 'score': 0.77}, {'connected_gene': 'CCDC88B', 'score': 0.37}]
chr11	GH11I064204	64204109	64205258	0.93	[{'connected_gene': 'FERMT3', 'score': 550.77}, {'connected_gene': 'TRPT1', 'score': 27.84}, {'connected_gene': 'NUDT22', 'score': 12.24}, {'connected_gene': 'DNAJC4', 'score': 12.21}, {'connected_gene': 'ENSG00000257086', 'score': 11.67}, {'connected_gene': 'PLCB3', 'score': 11.66}, {'connected_gene': 'MACROD1', 'score': 11.44}, {'connected_gene': 'GPR137', 'score': 11.34}, {'connected_gene': 'BAD', 'score': 11.31}, {'connected_gene': 'GC11M064182', 'score': 0.37}, {'connected_gene': 'STIP1', 'score': 0.37}]
chr11	GH11I064205	64205396	64209794	2.19	[{'connected_gene': 'FERMT3', 'score': 550.77}, {'connected_gene': 'TRPT1', 'score': 25.79}, {'connected_gene': 'ZFPL1', 'score': 25.16}, {'connected_gene': 'PLCB3', 'score': 22.46}, {'connected_gene': 'SF1', 'score': 21.61}, {'connected_gene': 'TRMT112', 'score': 12.31}, {'connected_gene': 'ENSG00000257086', 'score': 11.65}, {'connected_gene': 'GPR137', 'score': 11.57}, {'connected_gene': 'BAD', 'score': 11.55}, {'connected_gene': 'KCNK4-TEX40', 'score': 11.54}, {'connected_gene': 'KCNK4', 'score': 11.54}, {'connected_gene': 'ENSG00000207024', 'score': 11.53}, {'connected_gene': 'CATSPERZ', 'score': 11.52}, {'connected_gene': 'ESRRA', 'score': 11.52}, {'connected_gene': 'FAU', 'score': 10.3}, {'connected_gene': 'SYVN1', 'score': 9.66}, {'connected_gene': 'CCDC88B', 'score': 8.56}, {'connected_gene': 'ENSG00000256116', 'score': 5.75}, {'connected_gene': 'NUDT22', 'score': 0.37}]
chr11	GH11I064282	64282937	64286697	2.22	[{'connected_gene': 'BAD', 'score': 550.77}, {'connected_gene': 'GPR137', 'score': 550.37}, {'connected_gene': 'LOC102723878', 'score': 24.8}, {'connected_gene': 'SF1', 'score': 21.65}, {'connected_gene': 'TRMT112', 'score': 21.15}, {'connected_gene': 'POLA2', 'score': 19.77}, {'connected_gene': 'ZFPL1', 'score': 14.52}, {'connected_gene': 'ZNHIT2', 'score': 11.22}, {'connected_gene': 'PLCB3', 'score': 11.1}, {'connected_gene': 'ENSG00000257086', 'score': 10.96}, {'connected_gene': 'FAU', 'score': 10.31}, {'connected_gene': 'DNAJC4', 'score': 9.87}, {'connected_gene': 'NRXN2', 'score': 6.6}, {'connected_gene': 'FERMT3', 'score': 5.36}, {'connected_gene': 'KCNK4', 'score': 0.44}]
chr11	GH11I064267	64267086	64274313	1.82	[{'connected_gene': 'GPR137', 'score': 550.77}, {'connected_gene': 'ZFPL1', 'score': 34.68}, {'connected_gene': 'SF1', 'score': 32.9}, {'connected_gene': 'POLA2', 'score': 32.78}, {'connected_gene': 'PLCB3', 'score': 27.53}, {'connected_gene': 'TRMT112', 'score': 23.09}, {'connected_gene': 'DNAJC4', 'score': 21.3}, {'connected_gene': 'ENSG00000257086', 'score': 20.68}, {'connected_gene': 'FAU', 'score': 20.2}, {'connected_gene': 'LOC102723878', 'score': 19.24}, {'connected_gene': 'TRPT1', 'score': 17.08}, {'connected_gene': 'NAALADL1', 'score': 15.12}, {'connected_gene': 'NRXN2', 'score': 13.07}, {'connected_gene': 'KCNK4', 'score': 12.91}, {'connected_gene': 'SPINDOC', 'score': 12.7}, {'connected_gene': 'ATL3', 'score': 12.19}, {'connected_gene': 'ESRRA', 'score': 11.38}, {'connected_gene': 'ZNHIT2', 'score': 11.22}, {'connected_gene': 'RCOR2', 'score': 11.14}, {'connected_gene': 'PRDX5', 'score': 10.91}, {'connected_gene': 'PPP2R5B', 'score': 10.6}, {'connected_gene': 'C11orf95', 'score': 10.12}, {'connected_gene': 'ENSG00000231680', 'score': 9.23}, {'connected_gene': 'CCDC88B', 'score': 4.54}, {'connected_gene': 'GC11P064262', 'score': 0.44}, {'connected_gene': 'BAD', 'score': 0.39}]
chr11	GH11I064281	64281177	64281861	0.2	[{'connected_gene': 'PLCB3', 'score': 16.63}, {'connected_gene': 'BAD', 'score': 0.77}, {'connected_gene': 'GPR137', 'score': 0.39}]
chr11	GH11I064320	64320461	64325778	1.06	[{'connected_gene': 'PLCB3', 'score': 28.32}, {'connected_gene': 'LOC102723878', 'score': 25.84}, {'connected_gene': 'CATSPERZ', 'score': 12.21}, {'connected_gene': 'ENSG00000207024', 'score': 12.19}, {'connected_gene': 'KCNK4-TEX40', 'score': 12.17}, {'connected_gene': 'KCNK4', 'score': 12.17}, {'connected_gene': 'BAD', 'score': 12.15}, {'connected_gene': 'GPR137', 'score': 12.11}, {'connected_gene': 'ENSG00000257086', 'score': 11.39}, {'connected_gene': 'TRMT112', 'score': 10.65}, {'connected_gene': 'ENSG00000231680', 'score': 8.94}, {'connected_gene': 'FLRT1', 'score': 4.27}, {'connected_gene': 'ENSG00000256116', 'score': 4.2}, {'connected_gene': 'PIR36303', 'score': 0.77}, {'connected_gene': 'PRDX5', 'score': 0.44}, {'connected_gene': 'GC11P064331', 'score': 0.44}]
chr11	GH11I064237	64237035	64253602	2.32	[{'connected_gene': 'PPP1R14B', 'score': 572.68}, {'connected_gene': 'FKBP2', 'score': 550.77}, {'connected_gene': 'LOC105369340', 'score': 550.77}, {'connected_gene': 'PLCB3', 'score': 550.44}, {'connected_gene': 'TRPT1', 'score': 23.86}, {'connected_gene': 'LOC102723878', 'score': 22.35}, {'connected_gene': 'VEGFB', 'score': 19.71}, {'connected_gene': 'TRMT112', 'score': 17.45}, {'connected_gene': 'FERMT3', 'score': 12.7}, {'connected_gene': 'GPR137', 'score': 11.63}, {'connected_gene': 'BAD', 'score': 11.57}, {'connected_gene': 'ENSG00000257086', 'score': 6.66}, {'connected_gene': 'ENSG00000256116', 'score': 5.79}, {'connected_gene': 'FLRT1', 'score': 5.1}, {'connected_gene': 'PIR60417', 'score': 0.44}]
chr11	GH11I064215	64215169	64215258	0.49	[{'connected_gene': 'FKBP2', 'score': 12.56}, {'connected_gene': 'LOC105369340', 'score': 12.55}, {'connected_gene': 'ENSG00000257086', 'score': 12.55}, {'connected_gene': 'PPP1R14B', 'score': 12.55}, {'connected_gene': 'PLCB3', 'score': 12.53}, {'connected_gene': 'GPR137', 'score': 11.59}, {'connected_gene': 'BAD', 'score': 11.56}, {'connected_gene': 'MACROD1', 'score': 10.78}, {'connected_gene': 'FERMT3', 'score': 0.44}, {'connected_gene': 'NUDT22', 'score': 0.39}]
chr11	GH11I064274	64274879	64277731	0.82	[{'connected_gene': 'LOC102723878', 'score': 22.76}, {'connected_gene': 'DNAJC4', 'score': 11.65}, {'connected_gene': 'ESRRA', 'score': 11.4}, {'connected_gene': 'PRDX5', 'score': 10.92}, {'connected_gene': 'TRMT112', 'score': 10.92}, {'connected_gene': 'ENSG00000231680', 'score': 9.18}, {'connected_gene': 'BAD', 'score': 0.44}, {'connected_gene': 'GPR137', 'score': 0.44}]
chr11	GH11I064347	64347430	64349332	0.76	[{'connected_gene': 'LOC102723878', 'score': 22.34}, {'connected_gene': 'MIR1237', 'score': 11.87}, {'connected_gene': 'PRDX5', 'score': 11.82}, {'connected_gene': 'TRMT112', 'score': 11.82}, {'connected_gene': 'ESRRA', 'score': 11.79}, {'connected_gene': 'CATSPERZ', 'score': 11.5}, {'connected_gene': 'ENSG00000207024', 'score': 11.48}, {'connected_gene': 'KCNK4-TEX40', 'score': 11.47}, {'connected_gene': 'KCNK4', 'score': 11.47}, {'connected_gene': 'BAD', 'score': 11.46}, {'connected_gene': 'GPR137', 'score': 11.43}, {'connected_gene': 'GC11M064349', 'score': 0.77}, {'connected_gene': 'CCDC88B', 'score': 0.44}, {'connected_gene': 'MIR7155', 'score': 0.44}]