Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000370931 [[71318035, 71318542], [71419445, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513471]] [[71419468, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513260]]
ENST00000370932 [[71318035, 71318542], [71477987, 71478167], [71512363, 71513491]] [[71318521, 71318542], [71477987, 71478167], [71512363, 71513260]]
ENST00000351052 [[71318035, 71318542], [71419445, 71419472], [71439979, 71440071], [71477900, 71478167], [71512363, 71513491]] [[71419468, 71419472], [71439979, 71440071], [71477900, 71478167], [71512363, 71513260]]
ENST00000497146 [[71318124, 71318542], [71327987, 71328080], [71331371, 71331516], [71419445, 71419472], [71477987, 71478167], [71512363, 71513471]] [[71328051, 71328080], [71331371, 71331516], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
ENST00000361210 [[71318124, 71318542], [71327987, 71328080], [71334926, 71335002], [71419445, 71419472], [71477987, 71478167], [71512363, 71513491]] [[71328051, 71328080], [71334926, 71335002], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
ENST00000479353 [[71318124, 71318542], [71327987, 71328080], [71334926, 71335002], [71477987, 71478167], [71512363, 71513491]] [[71328051, 71328080], [71334926, 71335002], [71477987, 71478167], [71512363, 71513260]]
ENST00000460330 [[71318255, 71318542], [71419445, 71419472], [71477987, 71478167], [71512363, 71513316]] [[71318521, 71318542], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
ENST00000354608 [[71349438, 71349766], [71351960, 71352011], [71419445, 71419472], [71477987, 71478167], [71512363, 71513281]] [[71349631, 71349766], [71351960, 71352011], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
ENST00000356595 [[71418114, 71418742], [71419445, 71419472], [71477987, 71478167], [71512363, 71513471]] [[71418589, 71418742], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
ENST00000414819 [[71418114, 71418742], [71419445, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513491]] [[71419468, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513260]]
ENST00000306666 [[71436463, 71437416], [71439979, 71440071], [71477987, 71478167], [71512363, 71513471]] [[71437412, 71437416], [71439979, 71440071], [71477987, 71478167], [71512363, 71513260]]
ENST00000370924 [[71472313, 71478167], [71512363, 71513491]] [[71477897, 71478167], [71512363, 71513260]]
NM_198714 [[71318035, 71318542], [71419445, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513491]] [[71419468, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513260]]
NR_028292 [[71318035, 71318542], [71327987, 71328080], [71334926, 71335002], [71419445, 71419472], [71477987, 71478167], [71512363, 71513491]] None
NR_028294 [[71318035, 71318542], [71327987, 71328080], [71331371, 71331516], [71419445, 71419472], [71477987, 71478167], [71512363, 71513491]] None
NM_198716 [[71318035, 71318542], [71419445, 71419472], [71477987, 71478167], [71512363, 71513491]] [[71318521, 71318542], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
NR_028293 [[71318035, 71318542], [71327987, 71328080], [71334926, 71335002], [71477987, 71478167], [71512363, 71513491]] None
NM_198717 [[71318035, 71318542], [71477987, 71478167], [71512363, 71513491]] [[71318521, 71318542], [71477987, 71478167], [71512363, 71513260]]
NM_001126044 [[71418114, 71418742], [71419445, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513491]] [[71419468, 71419472], [71439979, 71440071], [71477987, 71478167], [71512363, 71513260]]
NM_198718 [[71418114, 71418742], [71419445, 71419472], [71477987, 71478167], [71512363, 71513491]] [[71418589, 71418742], [71419445, 71419472], [71477987, 71478167], [71512363, 71513260]]
NM_198719 [[71436463, 71437416], [71439979, 71440071], [71477987, 71478167], [71512363, 71513491]] [[71437412, 71437416], [71439979, 71440071], [71477987, 71478167], [71512363, 71513260]]
NM_198715 [[71471536, 71478167], [71512363, 71513491]] [[71477897, 71478167], [71512363, 71513260]]
Promoter
Chrom Start End Description
chr1 71512983 71513015 CAGE_peak_2_at_PTGER3_5end
chr1 71513487 71513506 CAGE_peak_1_at_PTGER3_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr1 GH01I071034 71034224 71035501 0.2 [{'connected_gene': 'PTGER3', 'score': 35.45}, {'connected_gene': 'ZRANB2', 'score': 5.64}, {'connected_gene': 'ZRANB2-AS1', 'score': 0.39}, {'connected_gene': 'GC01M071006', 'score': 0.31}]
chr1 GH01I071026 71026743 71029699 0.46 [{'connected_gene': 'PTGER3', 'score': 34.86}, {'connected_gene': 'ENSG00000235782', 'score': 11.32}, {'connected_gene': 'MIR186', 'score': 10.76}, {'connected_gene': 'ZRANB2', 'score': 10.71}, {'connected_gene': 'ZRANB2-AS1', 'score': 0.37}, {'connected_gene': 'GC01M071006', 'score': 0.34}]
chr1 GH01I071029 71029913 71034199 0.2 [{'connected_gene': 'PTGER3', 'score': 34.86}, {'connected_gene': 'MIR186', 'score': 10.77}, {'connected_gene': 'ZRANB2', 'score': 10.74}, {'connected_gene': 'ENSG00000235782', 'score': 10.59}, {'connected_gene': 'ZRANB2-AS1', 'score': 0.39}, {'connected_gene': 'GC01M071006', 'score': 0.34}]
chr1 GH01I071086 71086478 71086607 0.31 [{'connected_gene': 'PTGER3', 'score': 29.34}, {'connected_gene': 'LOC105378795', 'score': 0.77}, {'connected_gene': 'ZRANB2-AS2', 'score': 0.44}]
chr1 GH01I070779 70779102 70780307 0.31 [{'connected_gene': 'PTGER3', 'score': 4.51}, {'connected_gene': 'GC01M070780', 'score': 0.77}, {'connected_gene': 'GC01M070748', 'score': 0.31}, {'connected_gene': 'LINC01788', 'score': 0.19}]
chr1 GH01I071046 71046312 71048251 1.78 [{'connected_gene': 'PTGER3', 'score': 555.65}, {'connected_gene': 'ZRANB2-AS1', 'score': 550.77}, {'connected_gene': 'SRSF11', 'score': 10.55}]
chr1 GH01I070674 70674926 70676576 0.96 [{'connected_gene': 'PTGER3', 'score': 17.97}, {'connected_gene': 'ZRANB2-AS1', 'score': 11.24}, {'connected_gene': 'MIR186', 'score': 10.19}, {'connected_gene': 'ZRANB2', 'score': 10.19}, {'connected_gene': 'CASP3P1', 'score': 0.39}, {'connected_gene': 'LINC01788', 'score': 0.29}]
chr1 GH01I071011 71011355 71012888 0.31 [{'connected_gene': 'PTGER3', 'score': 21.46}, {'connected_gene': 'ZRANB2-AS1', 'score': 11.16}, {'connected_gene': 'MIR186', 'score': 10.43}, {'connected_gene': 'ZRANB2', 'score': 10.41}, {'connected_gene': 'GC01M071006', 'score': 0.77}]
chr1 GH01I071016 71016487 71023632 0.43 [{'connected_gene': 'PTGER3', 'score': 47.41}, {'connected_gene': 'ZRANB2-AS1', 'score': 13.25}, {'connected_gene': 'ENSG00000235782', 'score': 11.34}, {'connected_gene': 'MIR186', 'score': 11.05}, {'connected_gene': 'ZRANB2', 'score': 11.01}, {'connected_gene': 'GC01M071006', 'score': 0.39}]
chr1 GH01I071037 71037022 71039579 0.46 [{'connected_gene': 'PTGER3', 'score': 35.3}, {'connected_gene': 'ZRANB2-AS1', 'score': 0.44}, {'connected_gene': 'GC01M071006', 'score': 0.29}]
chr1 GH01I070666 70666408 70667324 0.38 [{'connected_gene': 'PTGER3', 'score': 4.04}, {'connected_gene': 'CASP3P1', 'score': 0.44}, {'connected_gene': 'LINC01788', 'score': 0.28}]
chr1 GH01I071014 71014369 71014633 0.42 [{'connected_gene': 'MIR186', 'score': 10.44}, {'connected_gene': 'ZRANB2', 'score': 10.41}, {'connected_gene': 'GC01M071006', 'score': 0.44}, {'connected_gene': 'PTGER3', 'score': 0.29}, {'connected_gene': 'ZRANB2-AS1', 'score': 0.29}]
chr1 GH01I071089 71089123 71090950 0.31 [{'connected_gene': 'LOC105378795', 'score': 550.77}, {'connected_gene': 'PTGER3', 'score': 5.96}, {'connected_gene': 'ZRANB2-AS2', 'score': 0.44}, {'connected_gene': 'GC01M071183', 'score': 0.15}]
chr1 GH01I071079 71079411 71082124 2.07 [{'connected_gene': 'ZRANB2-AS2', 'score': 550.77}, {'connected_gene': 'ZRANB2', 'score': 550.77}, {'connected_gene': 'SRSF11', 'score': 24.11}, {'connected_gene': 'PTGER3', 'score': 4.78}, {'connected_gene': 'MIR186', 'score': 0.39}]
chr1 GH01I071044 71044897 71045749 0.96 [{'connected_gene': 'ZRANB2-AS1', 'score': 550.77}, {'connected_gene': 'PTGER3', 'score': 0.77}, {'connected_gene': 'GC01M071006', 'score': 0.28}]
chr1 GH01I071007 71007558 71009244 0.2 [{'connected_gene': 'ENSG00000269933', 'score': 550.77}, {'connected_gene': 'GC01M071006', 'score': 550.77}, {'connected_gene': 'PTGER3', 'score': 16.48}, {'connected_gene': 'ZRANB2-AS1', 'score': 11.21}]
chr1 GH01I070932 70932567 70932759 0.22 [{'connected_gene': 'ENSG00000235782', 'score': 0.39}, {'connected_gene': 'GC01M070853', 'score': 0.18}, {'connected_gene': 'GC01M070854', 'score': 0.18}, {'connected_gene': 'PTGER3', 'score': 0.13}]
chr1 GH01I070934 70934224 70934551 0.35 [{'connected_gene': 'ENSG00000235782', 'score': 0.39}, {'connected_gene': 'GC01M070853', 'score': 0.18}, {'connected_gene': 'GC01M070854', 'score': 0.18}, {'connected_gene': 'PTGER3', 'score': 0.14}]
chr1 GH01I070948 70948129 70948505 0.29 [{'connected_gene': 'ENSG00000235782', 'score': 550.77}, {'connected_gene': 'GC01M070981', 'score': 0.28}, {'connected_gene': 'PTGER3', 'score': 0.15}]
chr1 GH01I070874 70874261 70875356 0.56 [{'connected_gene': 'GC01M070853', 'score': 0.34}, {'connected_gene': 'GC01M070854', 'score': 0.34}, {'connected_gene': 'ENSG00000235782', 'score': 0.19}, {'connected_gene': 'PTGER3', 'score': 0.09}]
chr1 GH01I070909 70909234 70909718 0.64 [{'connected_gene': 'ENSG00000235782', 'score': 11.8}, {'connected_gene': 'GC01M070853', 'score': 0.22}, {'connected_gene': 'GC01M070854', 'score': 0.22}, {'connected_gene': 'PTGER3', 'score': 0.12}]

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