PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000484437	[[44779152, 44779289], [44794836, 44795044], [44795715, 44795860], [44802986, 44803003]]	None
ENST00000296121	[[44790237, 44795044], [44795715, 44795860], [44802986, 44803154]]	[[44794832, 44795044], [44795715, 44795860], [44802986, 44803094]]
NM_001320334	[[44790235, 44795099], [44795715, 44795860], [44802986, 44803173]]	[[44795040, 44795099], [44795715, 44795860], [44802986, 44803094]]
NM_020696	[[44790235, 44795044], [44795715, 44795860], [44802986, 44803173]]	[[44794832, 44795044], [44795715, 44795860], [44802986, 44803094]]

Promoter

Chrom	Start	End	Description
chr3	44803088	44803126	CAGE_peak_1_at_KIAA1143_5end
chr3	44803141	44803159	CAGE_peak_2_at_KIAA1143_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I045052	45052688	45066370	1.72	[{'connected_gene': 'ZNF502', 'score': 29.2}, {'connected_gene': 'ZNF852', 'score': 25.25}, {'connected_gene': 'RN7SL145P', 'score': 24.84}, {'connected_gene': 'CLEC3B', 'score': 19.26}, {'connected_gene': 'ZNF35', 'score': 19.16}, {'connected_gene': 'CDCP1', 'score': 16.37}, {'connected_gene': 'ZNF197', 'score': 15.66}, {'connected_gene': 'ZNF660', 'score': 15.3}, {'connected_gene': 'EXOSC7', 'score': 12.21}, {'connected_gene': 'RNU5B-3P', 'score': 11.07}, {'connected_gene': 'TMEM158', 'score': 10.63}, {'connected_gene': 'ENSG00000202268', 'score': 10.23}, {'connected_gene': 'ZDHHC3', 'score': 10.2}, {'connected_gene': 'SACM1L', 'score': 10.19}, {'connected_gene': 'ZNF445', 'score': 9.97}, {'connected_gene': 'LIMD1', 'score': 9.48}, {'connected_gene': 'TMEM42', 'score': 6.46}, {'connected_gene': 'KIAA1143', 'score': 5.3}, {'connected_gene': 'ZNF501', 'score': 4.21}, {'connected_gene': 'LOC105377059', 'score': 0.44}]
chr3	GH03I044648	44648109	44649801	1.94	[{'connected_gene': 'ZNF35', 'score': 561.52}, {'connected_gene': 'ZNF852', 'score': 13.13}, {'connected_gene': 'RPS24P8', 'score': 12.77}, {'connected_gene': 'ZNF501', 'score': 12.23}, {'connected_gene': 'ZNF197', 'score': 10.38}, {'connected_gene': 'ZNF502', 'score': 10.09}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'KIAA1143', 'score': 5.05}, {'connected_gene': 'ENSG00000272077', 'score': 0.37}, {'connected_gene': 'ENSG00000236869', 'score': 0.28}]
chr3	GH03I044864	44864798	44865940	0.38	[{'connected_gene': 'KIAA1143', 'score': 12.57}, {'connected_gene': 'LIMD1', 'score': 4.23}, {'connected_gene': 'TMEM42', 'score': 0.77}, {'connected_gene': 'GC03P045071', 'score': 0.77}, {'connected_gene': 'PPIAP18', 'score': 0.44}, {'connected_gene': 'KIF15', 'score': 0.15}]
chr3	GH03I044760	44760800	44763306	2.09	[{'connected_gene': 'KIAA1143', 'score': 572.53}, {'connected_gene': 'KIF15', 'score': 550.77}, {'connected_gene': 'ZNF852', 'score': 23.66}, {'connected_gene': 'RN7SL145P', 'score': 10.5}, {'connected_gene': 'HNRNPA1P77', 'score': 0.18}]
chr3	GH03I044611	44611083	44611373	0.24	[{'connected_gene': 'KIAA1143', 'score': 13.67}, {'connected_gene': 'ZNF197', 'score': 3.77}, {'connected_gene': 'ZNF660', 'score': 3.1}, {'connected_gene': 'ZKSCAN7', 'score': 2.34}, {'connected_gene': 'ZNF445', 'score': 1.85}, {'connected_gene': 'ZNF502', 'score': 1.81}, {'connected_gene': 'ZNF501', 'score': 1.64}, {'connected_gene': 'PIR39553', 'score': 0.39}, {'connected_gene': 'ENSG00000236869', 'score': 0.19}]
chr3	GH03I044892	44892731	44893858	0.84	[{'connected_gene': 'ZNF660', 'score': 25.73}, {'connected_gene': 'TGM4', 'score': 8.2}, {'connected_gene': 'KIAA1143', 'score': 5.68}, {'connected_gene': 'ZNF501', 'score': 4.4}, {'connected_gene': 'ENSG00000235845', 'score': 0.44}]
chr3	GH03I044882	44882710	44887950	1.5	[{'connected_gene': 'ZNF660', 'score': 28.46}, {'connected_gene': 'ZKSCAN7', 'score': 10.2}, {'connected_gene': 'KIAA1143', 'score': 8.7}, {'connected_gene': 'TGM4', 'score': 6.76}, {'connected_gene': 'ZNF501', 'score': 4.57}, {'connected_gene': 'ZNF197', 'score': 4.35}, {'connected_gene': 'ENSG00000235845', 'score': 0.39}]
chr3	GH03I044196	44196666	44201021	1.13	[{'connected_gene': 'ZNF660', 'score': 25.21}, {'connected_gene': 'ZNF197', 'score': 7.8}, {'connected_gene': 'KIAA1143', 'score': 7.47}, {'connected_gene': 'ENSG00000271941', 'score': 5.36}, {'connected_gene': 'TOPAZ1', 'score': 0.26}, {'connected_gene': 'PIR53341', 'score': 0.18}]
chr3	GH03I044974	44974043	44977602	2.21	[{'connected_gene': 'EXOSC7', 'score': 566.38}, {'connected_gene': 'ZDHHC3', 'score': 554.91}, {'connected_gene': 'ZNF445', 'score': 16.55}, {'connected_gene': 'RN7SL145P', 'score': 14.75}, {'connected_gene': 'CLEC3B', 'score': 11.34}, {'connected_gene': 'ZNF502', 'score': 11.08}, {'connected_gene': 'ZKSCAN7', 'score': 10.78}, {'connected_gene': 'ZNF852', 'score': 10.5}, {'connected_gene': 'RNU5B-3P', 'score': 9.69}, {'connected_gene': 'KIAA1143', 'score': 9.3}, {'connected_gene': 'ZNF197', 'score': 6.24}]
chr3	GH03I044729	44729001	44730400	2.03	[{'connected_gene': 'ZNF501', 'score': 550.77}, {'connected_gene': 'LOC105377056', 'score': 550.77}, {'connected_gene': 'KIAA1143', 'score': 20.81}, {'connected_gene': 'ZNF852', 'score': 13.09}, {'connected_gene': 'ZNF35', 'score': 10.92}, {'connected_gene': 'ZNF502', 'score': 10.24}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'PIR43736', 'score': 0.37}]
chr3	GH03I044099	44099357	44101275	0.2	[{'connected_gene': 'RNU6-367P', 'score': 11.38}, {'connected_gene': 'TOPAZ1', 'score': 9.23}, {'connected_gene': 'ZNF502', 'score': 4.97}, {'connected_gene': 'KIAA1143', 'score': 4.09}, {'connected_gene': 'GC03P044115', 'score': 0.39}, {'connected_gene': 'GC03M044082', 'score': 0.37}]
chr3	GH03I044532	44532929	44533078	0.99	[{'connected_gene': 'ZNF197', 'score': 24.83}, {'connected_gene': 'ZNF852', 'score': 12.13}, {'connected_gene': 'ZKSCAN7', 'score': 11.23}, {'connected_gene': 'ENSG00000235845', 'score': 10.51}, {'connected_gene': 'TGM4', 'score': 10.51}, {'connected_gene': 'ZNF445', 'score': 10.46}, {'connected_gene': 'ZNF660', 'score': 10.35}, {'connected_gene': 'ZNF501', 'score': 10.05}, {'connected_gene': 'CLEC3B', 'score': 9.82}, {'connected_gene': 'RNU5B-3P', 'score': 9.81}, {'connected_gene': 'ZNF35', 'score': 9.64}, {'connected_gene': 'KIAA1143', 'score': 6.39}, {'connected_gene': 'LOC100419748', 'score': 0.77}]
chr3	GH03I044624	44624201	44626393	2.02	[{'connected_gene': 'ZNF197', 'score': 584.76}, {'connected_gene': 'ZNF197-AS1', 'score': 550.77}, {'connected_gene': 'ZNF35', 'score': 21.81}, {'connected_gene': 'ZNF852', 'score': 21.56}, {'connected_gene': 'KIAA1143', 'score': 14.13}, {'connected_gene': 'ZNF660', 'score': 11.28}, {'connected_gene': 'ZDHHC3', 'score': 10.08}, {'connected_gene': 'ZNF502', 'score': 10.05}, {'connected_gene': 'ZNF445', 'score': 10.0}, {'connected_gene': 'ENSG00000236869', 'score': 0.21}]
chr3	GH03I045078	45078401	45079975	1.13	[{'connected_gene': 'ENSG00000202268', 'score': 10.43}, {'connected_gene': 'KIAA1143', 'score': 6.77}, {'connected_gene': 'ZNF660', 'score': 6.47}, {'connected_gene': 'EXOSC7', 'score': 5.2}, {'connected_gene': 'ZNF197', 'score': 4.09}, {'connected_gene': 'LOC105377059', 'score': 0.39}, {'connected_gene': 'CDCP1', 'score': 0.2}]
chr3	GH03I044685	44685000	44686200	1.26	[{'connected_gene': 'ENSG00000236869', 'score': 550.77}, {'connected_gene': 'LOC101928592', 'score': 550.77}, {'connected_gene': 'ZNF197', 'score': 24.18}, {'connected_gene': 'ZNF35', 'score': 21.76}, {'connected_gene': 'KIAA1143', 'score': 15.25}, {'connected_gene': 'ZNF852', 'score': 13.11}, {'connected_gene': 'KIF15', 'score': 11.25}, {'connected_gene': 'ZNF501', 'score': 11.14}, {'connected_gene': 'ZNF660', 'score': 10.61}, {'connected_gene': 'ZNF502', 'score': 10.19}, {'connected_gene': 'ZKSCAN7', 'score': 10.17}, {'connected_gene': 'ZDHHC3', 'score': 10.09}, {'connected_gene': 'ZNF445', 'score': 8.93}, {'connected_gene': 'PIR62310', 'score': 0.77}]