Visualization of regulatory element with DNMs in transcripts


Visualization of de novo variants in transcripts


Visualization of original de novo CNV set
   There is no corresponding data published yet, we will update it when such data available.
Transcripts
Transcript ID Transcript exon region Coding exon region
ENST00000357139 [[110447765, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110561694, 110561721]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110561694, 110561721]]
ENST00000260283 [[110447765, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582849, 110583146], [110583358, 110583451]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582849, 110582954]]
ENST00000524756 [[110447777, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582380, 110582773]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582380, 110582416]]
ENST00000528829 [[110447777, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110583358, 110583451]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561349]]
ENST00000527598 [[110447777, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110583701, 110583912]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561349]]
ENST00000533353 [[110447777, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110561694, 110561762], [110583701, 110583912]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110561694, 110561721]]
ENST00000529591 [[110447766, 110447876], [110450115, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110460145, 110460409]] [[110447863, 110447876], [110450115, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110456983]]
NM_001258415 [[110447758, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582380, 110582773]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582380, 110582416]]
NM_020809 [[110447758, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582849, 110583146], [110583358, 110583451]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110582849, 110582954]]
NM_001258417 [[110447758, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110583358, 110583451]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561349]]
NM_001258416 [[110447758, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110561694, 110561762], [110583701, 110583912]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110561694, 110561721]]
NM_001258418 [[110447758, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561352], [110583701, 110583912]] [[110450093, 110451949], [110453044, 110453159], [110454271, 110454461], [110456939, 110457049], [110461371, 110461533], [110462700, 110462879], [110477284, 110477473], [110479707, 110479774], [110482032, 110482110], [110485284, 110485369], [110486276, 110486318], [110494885, 110495035], [110501350, 110501515], [110561269, 110561349]]
Promoter
Chrom Start End Description
chr11 110582541 110582558 CAGE_peak_2_at_ARHGAP20_5end
chr11 110583123 110583173 CAGE_peak_1_at_ARHGAP20_5end
Enhancer
Chrom Start End Genehancer ID Score Attributes
chr11 GH11I110762 110762442 110764347 0.9 [{'connected_gene': 'ARHGAP20', 'score': 5.07}, {'connected_gene': 'HNRNPA1P60', 'score': 0.31}]
chr11 GH11I110759 110759538 110760498 0.63 [{'connected_gene': 'ARHGAP20', 'score': 5.35}, {'connected_gene': 'HNRNPA1P60', 'score': 0.31}]
chr11 GH11I110715 110715638 110715787 0.2 [{'connected_gene': 'ARHGAP20', 'score': 0.77}, {'connected_gene': 'HNRNPA1P60', 'score': 0.19}]
chr11 GH11I110710 110710601 110713677 2.35 [{'connected_gene': 'ARHGAP20', 'score': 562.94}, {'connected_gene': 'GC11P110684', 'score': 0.31}]
chr11 GH11I110777 110777458 110779315 0.76 [{'connected_gene': 'HNRNPA1P60', 'score': 0.39}, {'connected_gene': 'ARHGAP20', 'score': 0.2}]

© 2018 bmi.sjtu.edu.cn. All rights reserved.
浙ICP备18030141号.