PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000248668	[[39797207, 39799182], [39804570, 39805976]]	[[39798272, 39799182], [39804570, 39805976]]
NM_020862	[[39797456, 39799182], [39804570, 39805976]]	[[39798272, 39799182], [39804570, 39805976]]

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I039297	39297737	39299083	0.54	[{'connected_gene': 'SUPT5H', 'score': 21.1}, {'connected_gene': 'ZNF780B', 'score': 15.54}, {'connected_gene': 'PAF1', 'score': 11.75}, {'connected_gene': 'ZNF780A', 'score': 10.66}, {'connected_gene': 'ZNF546', 'score': 10.32}, {'connected_gene': 'SAMD4B', 'score': 10.31}, {'connected_gene': 'PSMC4', 'score': 10.0}, {'connected_gene': 'LRFN1', 'score': 4.86}, {'connected_gene': 'IFNL1', 'score': 0.77}, {'connected_gene': 'GC19M039740', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.37}]
chr19	GH19I039320	39320400	39321201	1.49	[{'connected_gene': 'LRFN1', 'score': 557.68}, {'connected_gene': 'ENSG00000268262', 'score': 550.77}, {'connected_gene': 'HNRNPL', 'score': 44.94}, {'connected_gene': 'SUPT5H', 'score': 38.78}, {'connected_gene': 'ZNF780B', 'score': 31.48}, {'connected_gene': 'PAK4', 'score': 29.41}, {'connected_gene': 'ZNF780A', 'score': 22.63}, {'connected_gene': 'ZNF546', 'score': 22.54}, {'connected_gene': 'FBL', 'score': 22.19}, {'connected_gene': 'FBXO17', 'score': 19.92}, {'connected_gene': 'ENSG00000269688', 'score': 13.34}, {'connected_gene': 'ZFP36', 'score': 12.34}, {'connected_gene': 'RN7SL566P', 'score': 12.28}, {'connected_gene': 'PAF1', 'score': 11.96}, {'connected_gene': 'PLEKHG2', 'score': 11.24}, {'connected_gene': 'AKT2', 'score': 11.2}, {'connected_gene': 'RPS16', 'score': 11.08}, {'connected_gene': 'ACTN4', 'score': 10.11}, {'connected_gene': 'ENSG00000268756', 'score': 10.07}, {'connected_gene': 'GC19M039741', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.28}]
chr19	GH19I039319	39319945	39320336	1.02	[{'connected_gene': 'LRFN1', 'score': 552.83}, {'connected_gene': 'ENSG00000268262', 'score': 550.77}, {'connected_gene': 'HNRNPL', 'score': 44.94}, {'connected_gene': 'SUPT5H', 'score': 38.78}, {'connected_gene': 'PAK4', 'score': 29.41}, {'connected_gene': 'ZNF780B', 'score': 23.02}, {'connected_gene': 'ZNF780A', 'score': 22.63}, {'connected_gene': 'ZNF546', 'score': 22.54}, {'connected_gene': 'FBL', 'score': 22.19}, {'connected_gene': 'FBXO17', 'score': 19.92}, {'connected_gene': 'ENSG00000269688', 'score': 13.34}, {'connected_gene': 'RN7SL566P', 'score': 12.28}, {'connected_gene': 'PAF1', 'score': 11.96}, {'connected_gene': 'PLEKHG2', 'score': 11.24}, {'connected_gene': 'AKT2', 'score': 11.2}, {'connected_gene': 'RPS16', 'score': 11.08}, {'connected_gene': 'ACTN4', 'score': 10.11}, {'connected_gene': 'ENSG00000268756', 'score': 10.09}, {'connected_gene': 'CLC', 'score': 2.12}, {'connected_gene': 'GC19M039741', 'score': 0.44}, {'connected_gene': 'GC19P039283', 'score': 0.28}]
chr19	GH19I039326	39326381	39326570	0.63	[{'connected_gene': 'LRFN1', 'score': 5.29}, {'connected_gene': 'ENSG00000268262', 'score': 0.44}, {'connected_gene': 'GC19P039341', 'score': 0.37}, {'connected_gene': 'GC19P039283', 'score': 0.26}]
chr19	GH19I038829	38829045	38833605	2.33	[{'connected_gene': 'ECH1', 'score': 550.77}, {'connected_gene': 'HNRNPL', 'score': 35.02}, {'connected_gene': 'ENSG00000269688', 'score': 13.69}, {'connected_gene': 'LOC100631378', 'score': 12.11}, {'connected_gene': 'RN7SL566P', 'score': 12.06}, {'connected_gene': 'LGALS7', 'score': 12.06}, {'connected_gene': 'PLEKHG2', 'score': 11.11}, {'connected_gene': 'ENSG00000268756', 'score': 10.44}, {'connected_gene': 'LGALS7B', 'score': 6.74}, {'connected_gene': 'LRFN1', 'score': 5.21}, {'connected_gene': 'ENSG00000269050', 'score': 4.92}, {'connected_gene': 'LGALS4', 'score': 4.71}, {'connected_gene': 'PIR58999', 'score': 0.77}, {'connected_gene': 'ENSG00000268083', 'score': 0.44}]
chr19	GH19I038876	38876690	38881600	1.8	[{'connected_gene': 'RINL', 'score': 556.01}, {'connected_gene': 'PAF1', 'score': 11.62}, {'connected_gene': 'SUPT5H', 'score': 10.8}, {'connected_gene': 'SAMD4B', 'score': 10.09}, {'connected_gene': 'LGALS7', 'score': 9.81}, {'connected_gene': 'LRFN1', 'score': 5.06}, {'connected_gene': 'LGALS4', 'score': 4.89}, {'connected_gene': 'FBXO17', 'score': 4.82}, {'connected_gene': 'ENSG00000267892', 'score': 4.07}, {'connected_gene': 'GC19M038871', 'score': 0.77}, {'connected_gene': 'SIRT2', 'score': 0.34}]
chr19	GH19I039306	39306541	39306690	0.71	[{'connected_gene': 'EID2B', 'score': 17.26}, {'connected_gene': 'HNRNPL', 'score': 16.91}, {'connected_gene': 'PLEKHG2', 'score': 16.47}, {'connected_gene': 'MED29', 'score': 15.45}, {'connected_gene': 'FBL', 'score': 14.19}, {'connected_gene': 'RPS16', 'score': 11.75}, {'connected_gene': 'ACTN4', 'score': 10.74}, {'connected_gene': 'KCNK6', 'score': 10.56}, {'connected_gene': 'EID2', 'score': 10.13}, {'connected_gene': 'ENSG00000269688', 'score': 10.09}, {'connected_gene': 'GC19M039722', 'score': 0.77}, {'connected_gene': 'GC19M039740', 'score': 0.77}, {'connected_gene': 'LRFN1', 'score': 0.39}, {'connected_gene': 'IFNL1', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.34}]
chr19	GH19I039303	39303093	39304008	0.64	[{'connected_gene': 'FBXO17', 'score': 11.85}, {'connected_gene': 'LRFN1', 'score': 4.93}, {'connected_gene': 'GC19M039740', 'score': 0.44}, {'connected_gene': 'IFNL1', 'score': 0.44}, {'connected_gene': 'GC19P039283', 'score': 0.34}]
chr19	GH19I039307	39307695	39308050	0.72	[{'connected_gene': 'GC19M039722', 'score': 550.77}, {'connected_gene': 'GC19M039740', 'score': 550.77}, {'connected_gene': 'LRFN1', 'score': 0.39}, {'connected_gene': 'IFNL1', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.34}]
chr19	GH19I039311	39307421	39307650	0.69	[{'connected_gene': 'GC19M039740', 'score': 550.77}, {'connected_gene': 'GC19M039722', 'score': 0.77}, {'connected_gene': 'LRFN1', 'score': 0.39}, {'connected_gene': 'IFNL1', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.34}]
chr19	GH19I039312	39309561	39309710	0.43	[{'connected_gene': 'GC19M039722', 'score': 550.77}, {'connected_gene': 'GC19M039741', 'score': 550.77}, {'connected_gene': 'GC19M039740', 'score': 550.77}, {'connected_gene': 'LRFN1', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.31}]
chr19	GH19I039308	39308521	39308690	0.86	[{'connected_gene': 'GC19M039722', 'score': 550.77}, {'connected_gene': 'GC19M039740', 'score': 550.77}, {'connected_gene': 'GC19M039741', 'score': 550.77}, {'connected_gene': 'HNRNPL', 'score': 13.04}, {'connected_gene': 'FBL', 'score': 11.78}, {'connected_gene': 'AKT2', 'score': 10.63}, {'connected_gene': 'ZNF780A', 'score': 10.39}, {'connected_gene': 'PAK4', 'score': 9.93}, {'connected_gene': 'LRFN1', 'score': 0.39}, {'connected_gene': 'IFNL1', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.31}]
chr19	GH19I039309	39308061	39308270	0.72	[{'connected_gene': 'GC19M039722', 'score': 550.77}, {'connected_gene': 'GC19M039740', 'score': 550.77}, {'connected_gene': 'HNRNPL', 'score': 13.04}, {'connected_gene': 'FBL', 'score': 11.78}, {'connected_gene': 'AKT2', 'score': 10.63}, {'connected_gene': 'ZNF780A', 'score': 10.39}, {'connected_gene': 'PAK4', 'score': 9.93}, {'connected_gene': 'LRFN1', 'score': 0.39}, {'connected_gene': 'IFNL1', 'score': 0.39}, {'connected_gene': 'GC19P039283', 'score': 0.31}]
chr19	GH19I039310	39310530	39311550	0.92	[{'connected_gene': 'GC19M039722', 'score': 550.77}, {'connected_gene': 'GC19M039740', 'score': 550.77}, {'connected_gene': 'GC19M039741', 'score': 550.77}, {'connected_gene': 'HNRNPL', 'score': 21.42}, {'connected_gene': 'FBL', 'score': 12.0}, {'connected_gene': 'PAK4', 'score': 11.32}, {'connected_gene': 'ENSG00000269688', 'score': 11.0}, {'connected_gene': 'PSMC4', 'score': 10.92}, {'connected_gene': 'PAF1', 'score': 10.46}, {'connected_gene': 'ZNF780A', 'score': 9.91}, {'connected_gene': 'LRFN1', 'score': 0.44}, {'connected_gene': 'GC19P039283', 'score': 0.31}]