PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000528697	[[40135842, 40137884], [40162350, 40162403], [40263068, 40263148], [40341177, 40341271], [40669691, 40669828], [40955184, 40955273], [41480980, 41481135]]	[[40135919, 40137842]]
ENST00000530763	[[40135842, 40137884], [40162350, 40162403], [40341177, 40341271], [40669691, 40669828], [41480980, 41481323]]	[[40135919, 40137842]]
ENST00000534577	[[40669773, 40669828], [40955184, 40955273], [41244346, 41244558], [41480980, 41481186]]	None
ENST00000278198	[[40135752, 40137884], [40313742, 40315664]]	[[40135919, 40137842]]
ENST00000527150	[[40135790, 40137884], [40162350, 40162403], [40313742, 40314680]]	[[40135919, 40137842]]
ENST00000533474	[[40137719, 40137884], [40162350, 40162403], [40263068, 40263433]]	[[40137719, 40137842]]
NM_001258419	[[40135748, 40137884], [40162350, 40162403], [40263068, 40263148], [40341177, 40341271], [40669691, 40669828], [40955184, 40955273], [41480980, 41481186]]	[[40135919, 40137842]]
NM_020929	[[40135748, 40137884], [40162350, 40162403], [40341177, 40341271], [40669691, 40669828], [41480980, 41481186]]	[[40135919, 40137842]]
NR_047673	[[40135748, 40137884], [40162350, 40162403], [40313742, 40314680]]	None
NR_047674	[[40135748, 40137884], [40313742, 40314680]]	None

Promoter

Chrom	Start	End	Description
chr11	40263097	40263118	CAGE_peak_19_at_LRRC4C_5end
chr11	40314652	40314669	CAGE_peak_8_at_LRRC4C_5end
chr11	40315134	40315154	CAGE_peak_10_at_LRRC4C_5end
chr11	40315234	40315252	CAGE_peak_24_at_LRRC4C_5end
chr11	40315625	40315638	CAGE_peak_7_at_LRRC4C_5end
chr11	40315640	40315684	CAGE_peak_2_at_LRRC4C_5end
chr11	40315686	40315714	CAGE_peak_3_at_LRRC4C_5end
chr11	41481144	41481215	CAGE_peak_1_at_LRRC4C_5end
chr11	41481753	41481767	CAGE_peak_4_at_LRRC4C_5end
chr11	41481776	41481797	CAGE_peak_11_at_LRRC4C_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I040783	40783099	40783400	0.22	[{'connected_gene': 'LRRC4C', 'score': 2.16}, {'connected_gene': 'GC11P040773', 'score': 0.44}, {'connected_gene': 'RNU6-365P', 'score': 0.05}]
chr11	GH11I040734	40734968	40735012	0.22	[{'connected_gene': 'LRRC4C', 'score': 1.46}, {'connected_gene': 'GC11P040773', 'score': 0.28}, {'connected_gene': 'LOC100419712', 'score': 0.06}]
chr11	GH11I041521	41521707	41524022	0.31	[{'connected_gene': 'LRRC4C', 'score': 10.97}, {'connected_gene': 'RPL9P23', 'score': 0.39}, {'connected_gene': 'LOC105376640', 'score': 0.08}]
chr11	GH11I041497	41497591	41498403	0.38	[{'connected_gene': 'LRRC4C', 'score': 11.14}, {'connected_gene': 'RPL9P23', 'score': 0.28}]
chr11	GH11I041450	41450484	41450655	0.22	[{'connected_gene': 'LRRC4C', 'score': 0.44}, {'connected_gene': 'ENSG00000255132', 'score': 0.22}]
chr11	GH11I041460	41459619	41459678	0.5	[{'connected_gene': 'LRRC4C', 'score': 550.77}, {'connected_gene': 'ENSG00000255132', 'score': 0.2}]
chr11	GH11I041455	41455892	41456887	0.38	[{'connected_gene': 'LRRC4C', 'score': 0.77}, {'connected_gene': 'ENSG00000255132', 'score': 0.21}]
chr11	GH11I041449	41449766	41450143	0.26	[{'connected_gene': 'LRRC4C', 'score': 0.39}, {'connected_gene': 'ENSG00000255132', 'score': 0.22}]
chr11	GH11I041459	41459781	41460200	0.7	[{'connected_gene': 'LRRC4C', 'score': 550.77}, {'connected_gene': 'ENSG00000255132', 'score': 0.2}]
chr11	GH11I041428	41428913	41429185	0.24	[{'connected_gene': 'LRRC4C', 'score': 11.33}, {'connected_gene': 'ENSG00000255132', 'score': 0.29}]
chr11	GH11I041051	41051016	41055184	0.4	[{'connected_gene': 'RNU6-365P', 'score': 0.2}, {'connected_gene': 'GC11P040773', 'score': 0.06}, {'connected_gene': 'LRRC4C', 'score': 0.05}]
chr11	GH11I041118	41118651	41118760	0.31	[{'connected_gene': 'RNU6-365P', 'score': 0.77}, {'connected_gene': 'GC11P040773', 'score': 0.05}, {'connected_gene': 'LRRC4C', 'score': 0.05}]
chr11	GH11I041116	41116917	41117280	0.31	[{'connected_gene': 'RNU6-365P', 'score': 0.44}, {'connected_gene': 'GC11P040773', 'score': 0.05}, {'connected_gene': 'LRRC4C', 'score': 0.05}]
chr11	GH11I040602	40602951	40603100	0.2	[{'connected_gene': 'LOC100419712', 'score': 0.1}, {'connected_gene': 'GC11P040773', 'score': 0.09}, {'connected_gene': 'LRRC4C', 'score': 0.03}]
chr11	GH11I041534	41534098	41535545	0.2	[{'connected_gene': 'RPL9P23', 'score': 550.77}, {'connected_gene': 'LRRC4C', 'score': 10.21}, {'connected_gene': 'LOC105376640', 'score': 0.1}]
chr11	GH11I041500	41500371	41500771	0.23	[{'connected_gene': 'RPL9P23', 'score': 0.28}, {'connected_gene': 'LRRC4C', 'score': 0.26}]
chr11	GH11I041392	41392097	41395412	0.31	[{'connected_gene': 'ENSG00000255132', 'score': 550.77}, {'connected_gene': 'LRRC4C', 'score': 10.53}, {'connected_gene': 'GC11M041362', 'score': 0.29}]
chr11	GH11I040787	40787230	40787553	0.2	[{'connected_gene': 'GC11P040773', 'score': 0.39}, {'connected_gene': 'RNU6-365P', 'score': 0.05}, {'connected_gene': 'LRRC4C', 'score': 0.03}]
chr11	GH11I040847	40847653	40847802	0.23	[{'connected_gene': 'GC11P040773', 'score': 0.19}, {'connected_gene': 'RNU6-365P', 'score': 0.06}, {'connected_gene': 'LRRC4C', 'score': 0.03}]
chr11	GH11I041247	41247636	41248930	0.2	[{'connected_gene': 'GC11P041305', 'score': 0.22}, {'connected_gene': 'RNU6-365P', 'score': 0.13}, {'connected_gene': 'LRRC4C', 'score': 0.08}]
chr11	GH11I040679	40679072	40680021	0.2	[{'connected_gene': 'GC11P040773', 'score': 0.16}, {'connected_gene': 'LOC100419712', 'score': 0.07}, {'connected_gene': 'LRRC4C', 'score': 0.03}]