PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000295927	[[157154577, 157154852], [157155301, 157155703], [157160154, 157161417]]	[[157154722, 157154852], [157155301, 157155703], [157160154, 157160768]]
NM_002852	[[157154579, 157154852], [157155301, 157155703], [157160154, 157161417]]	[[157154722, 157154852], [157155301, 157155703], [157160154, 157160768]]

Promoter

Chrom	Start	End	Description
chr3	157154631	157154645	CAGE_peak_1_at_PTX3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I157416	157416815	157418251	0.46	[{'connected_gene': 'VEPH1', 'score': 11.14}, {'connected_gene': 'PTX3', 'score': 0.37}, {'connected_gene': 'LOC105374179', 'score': 0.1}]
chr3	GH03I157459	157459726	157461568	0.69	[{'connected_gene': 'VEPH1', 'score': 8.14}, {'connected_gene': 'PTX3', 'score': 0.34}]
chr3	GH03I157493	157493732	157493881	0.63	[{'connected_gene': 'VEPH1', 'score': 0.28}, {'connected_gene': 'PTX3', 'score': 0.22}]
chr3	GH03I157446	157446000	157447400	0.66	[{'connected_gene': 'VEPH1', 'score': 4.46}, {'connected_gene': 'PTX3', 'score': 0.44}]
chr3	GH03I157503	157502000	157502141	0.2	[{'connected_gene': 'VEPH1', 'score': 0.29}, {'connected_gene': 'PTX3', 'score': 0.2}]
chr3	GH03I157463	157463767	157465001	0.2	[{'connected_gene': 'VEPH1', 'score': 13.66}, {'connected_gene': 'PTX3', 'score': 0.31}]
chr3	GH03I157475	157475641	157476836	1.08	[{'connected_gene': 'VEPH1', 'score': 11.4}, {'connected_gene': 'PTX3', 'score': 0.28}]
chr3	GH03I157498	157498973	157500481	1.87	[{'connected_gene': 'VEPH1', 'score': 550.29}, {'connected_gene': 'CCNL1', 'score': 15.79}, {'connected_gene': 'PTX3', 'score': 0.21}]
chr3	GH03I157502	157502980	157504738	0.93	[{'connected_gene': 'VEPH1', 'score': 567.21}, {'connected_gene': 'PQLC2L', 'score': 11.17}, {'connected_gene': 'PTX3', 'score': 0.2}]
chr3	GH03I157495	157495514	157495573	0.5	[{'connected_gene': 'VEPH1', 'score': 561.3}, {'connected_gene': 'PQLC2L', 'score': 10.75}, {'connected_gene': 'PTX3', 'score': 0.22}]
chr3	GH03I157526	157526923	157529283	0.96	[{'connected_gene': 'VEPH1', 'score': 17.59}, {'connected_gene': 'PQLC2L', 'score': 6.55}, {'connected_gene': 'PTX3', 'score': 0.16}]
chr3	GH03I157530	157530114	157534446	1.45	[{'connected_gene': 'VEPH1', 'score': 569.73}, {'connected_gene': 'PQLC2L', 'score': 14.83}, {'connected_gene': 'PTX3', 'score': 0.15}]
chr3	GH03I157496	157496668	157496727	0.5	[{'connected_gene': 'VEPH1', 'score': 561.3}, {'connected_gene': 'PQLC2L', 'score': 10.75}, {'connected_gene': 'PTX3', 'score': 0.22}]
chr3	GH03I157428	157428801	157429000	0.52	[{'connected_gene': 'PTX3', 'score': 0.44}, {'connected_gene': 'VEPH1', 'score': 0.15}, {'connected_gene': 'LOC105374179', 'score': 0.09}]
chr3	GH03I157444	157444063	157444761	0.58	[{'connected_gene': 'PTX3', 'score': 0.44}, {'connected_gene': 'VEPH1', 'score': 0.17}]
chr3	GH03I157442	157442912	157442992	0.57	[{'connected_gene': 'PTX3', 'score': 0.44}, {'connected_gene': 'VEPH1', 'score': 0.16}]
chr3	GH03I157447	157444872	157445021	0.2	[{'connected_gene': 'PTX3', 'score': 0.44}, {'connected_gene': 'VEPH1', 'score': 0.17}]
chr3	GH03I157467	157467200	157467800	0.31	[{'connected_gene': 'PTX3', 'score': 0.29}, {'connected_gene': 'VEPH1', 'score': 0.2}]
chr3	GH03I157445	157445401	157445601	0.2	[{'connected_gene': 'PTX3', 'score': 0.44}, {'connected_gene': 'VEPH1', 'score': 0.17}]
chr3	GH03I157436	157436152	157439839	1.91	[{'connected_gene': 'PTX3', 'score': 550.77}, {'connected_gene': 'KRT18P34', 'score': 6.06}, {'connected_gene': 'VEPH1', 'score': 0.15}]
chr3	GH03I157429	157429811	157430124	0.25	[{'connected_gene': 'CCNL1', 'score': 4.1}, {'connected_gene': 'PTX3', 'score': 2.44}, {'connected_gene': 'VEPH1', 'score': 0.15}, {'connected_gene': 'LOC105374179', 'score': 0.09}]
chr3	GH03I157358	157358549	157361160	0.68	[{'connected_gene': 'KRT18P34', 'score': 16.74}, {'connected_gene': 'PTX3', 'score': 11.41}, {'connected_gene': 'VEPH1', 'score': 11.32}, {'connected_gene': 'ENSG00000243176', 'score': 4.97}, {'connected_gene': 'LOC105374179', 'score': 0.13}, {'connected_gene': 'LOC101928236', 'score': 0.08}]
chr3	GH03I157347	157347912	157348041	0.46	[{'connected_gene': 'KRT18P34', 'score': 15.33}, {'connected_gene': 'PTX3', 'score': 0.17}, {'connected_gene': 'LOC105374179', 'score': 0.14}, {'connected_gene': 'ENSG00000243176', 'score': 0.09}, {'connected_gene': 'LOC101928236', 'score': 0.09}, {'connected_gene': 'VEPH1', 'score': 0.09}]
chr3	GH03I157297	157297479	157299114	0.38	[{'connected_gene': 'KRT18P34', 'score': 27.7}, {'connected_gene': 'ENSG00000243176', 'score': 7.11}, {'connected_gene': 'LOC105374179', 'score': 0.22}, {'connected_gene': 'PTX3', 'score': 0.12}, {'connected_gene': 'LOC101928236', 'score': 0.12}, {'connected_gene': 'VEPH1', 'score': 0.07}]
chr3	GH03I157333	157333171	157336901	1.04	[{'connected_gene': 'KRT18P34', 'score': 17.06}, {'connected_gene': 'ENSG00000243176', 'score': 7.08}, {'connected_gene': 'LOC105374179', 'score': 0.16}, {'connected_gene': 'PTX3', 'score': 0.15}, {'connected_gene': 'LOC101928236', 'score': 0.09}, {'connected_gene': 'VEPH1', 'score': 0.08}]
chr3	GH03I157274	157274352	157275411	0.9	[{'connected_gene': 'KRT18P34', 'score': 28.59}, {'connected_gene': 'LOC105374179', 'score': 0.29}, {'connected_gene': 'ENSG00000243176', 'score': 0.15}, {'connected_gene': 'LOC101928236', 'score': 0.14}, {'connected_gene': 'PTX3', 'score': 0.1}, {'connected_gene': 'VEPH1', 'score': 0.07}]
chr3	GH03I157262	157262543	157264046	0.58	[{'connected_gene': 'KRT18P34', 'score': 18.03}, {'connected_gene': 'LOC105374179', 'score': 0.34}, {'connected_gene': 'ENSG00000243176', 'score': 0.17}, {'connected_gene': 'LOC101928236', 'score': 0.15}, {'connected_gene': 'PTX3', 'score': 0.09}, {'connected_gene': 'VEPH1', 'score': 0.06}]
chr3	GH03I157293	157293438	157297043	0.54	[{'connected_gene': 'KRT18P34', 'score': 27.92}, {'connected_gene': 'LOC105374179', 'score': 0.23}, {'connected_gene': 'ENSG00000243176', 'score': 0.13}, {'connected_gene': 'LOC101928236', 'score': 0.12}, {'connected_gene': 'PTX3', 'score': 0.11}, {'connected_gene': 'VEPH1', 'score': 0.07}]
chr3	GH03I157299	157299446	157301445	0.83	[{'connected_gene': 'KRT18P34', 'score': 29.82}, {'connected_gene': 'LOC105374179', 'score': 0.22}, {'connected_gene': 'ENSG00000243176', 'score': 0.13}, {'connected_gene': 'LOC101928236', 'score': 0.12}, {'connected_gene': 'PTX3', 'score': 0.12}, {'connected_gene': 'VEPH1', 'score': 0.07}]
chr3	GH03I157247	157247600	157249474	1.17	[{'connected_gene': 'KRT18P34', 'score': 18.05}, {'connected_gene': 'LOC105374179', 'score': 0.44}, {'connected_gene': 'ENSG00000243176', 'score': 0.19}, {'connected_gene': 'LOC101928236', 'score': 0.18}, {'connected_gene': 'PTX3', 'score': 0.09}]
chr3	GH03I157310	157310833	157312782	0.83	[{'connected_gene': 'KRT18P34', 'score': 27.89}, {'connected_gene': 'LINC02029', 'score': 4.57}, {'connected_gene': 'LOC105374179', 'score': 0.2}, {'connected_gene': 'PTX3', 'score': 0.13}, {'connected_gene': 'ENSG00000243176', 'score': 0.12}, {'connected_gene': 'LOC101928236', 'score': 0.11}, {'connected_gene': 'VEPH1', 'score': 0.07}]
chr3	GH03I157290	157290829	157291103	0.97	[{'connected_gene': 'LOC105374179', 'score': 0.25}, {'connected_gene': 'LOC101928236', 'score': 0.13}, {'connected_gene': 'ENSG00000243176', 'score': 0.13}, {'connected_gene': 'PTX3', 'score': 0.11}, {'connected_gene': 'VEPH1', 'score': 0.07}]
chr3	GH03I157248	157247201	157247401	0.4	[{'connected_gene': 'LOC105374179', 'score': 0.44}, {'connected_gene': 'ENSG00000243176', 'score': 0.19}, {'connected_gene': 'LOC101928236', 'score': 0.18}, {'connected_gene': 'PTX3', 'score': 0.09}]
chr3	GH03I157066	157066198	157068025	1.26	[{'connected_gene': 'TIPARP-AS1', 'score': 10.54}, {'connected_gene': 'TIPARP', 'score': 10.54}, {'connected_gene': 'LINC00886', 'score': 9.09}, {'connected_gene': 'PQLC2L', 'score': 4.16}, {'connected_gene': 'PTX3', 'score': 1.6}, {'connected_gene': 'LINC02029', 'score': 0.39}, {'connected_gene': 'RN7SKP177', 'score': 0.25}]
chr3	GH03I157281	157281863	157284124	0.97	[{'connected_gene': 'ENSG00000243176', 'score': 7.13}, {'connected_gene': 'KRT18P34', 'score': 6.79}, {'connected_gene': 'LOC105374179', 'score': 0.26}, {'connected_gene': 'LOC101928236', 'score': 0.13}, {'connected_gene': 'PTX3', 'score': 0.1}, {'connected_gene': 'VEPH1', 'score': 0.07}]