PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000298352	[[77731825, 77733013], [77734808, 77734928], [77735557, 77735669], [77737191, 77737655]]	[[77732878, 77733013], [77734808, 77734928], [77735557, 77735669], [77737191, 77737280]]
NM_021257	[[77731833, 77733013], [77734808, 77734928], [77735557, 77735669], [77737191, 77737655]]	[[77732878, 77733013], [77734808, 77734928], [77735557, 77735669], [77737191, 77737280]]

Promoter

Chrom	Start	End	Description
chr14	77737543	77737554	CAGE_peak_1_at_NGB_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr14	GH14I077580	77580445	77583199	1.24	[{'connected_gene': 'SPTLC2', 'score': 27.14}, {'connected_gene': 'RPL21P10', 'score': 14.27}, {'connected_gene': 'ALKBH1', 'score': 12.8}, {'connected_gene': 'SNW1', 'score': 12.7}, {'connected_gene': 'VIPAS39', 'score': 12.33}, {'connected_gene': 'VASH1', 'score': 11.15}, {'connected_gene': 'ZMYND19P1', 'score': 11.12}, {'connected_gene': 'ENSG00000259081', 'score': 11.01}, {'connected_gene': 'RPL22P2', 'score': 10.64}, {'connected_gene': 'NGB', 'score': 9.83}, {'connected_gene': 'ANGEL1', 'score': 4.83}, {'connected_gene': 'RN7SL587P', 'score': 0.29}]
chr14	GH14I077133	77133858	77134027	0.84	[{'connected_gene': 'CIPC', 'score': 16.52}, {'connected_gene': 'ENSG00000201384', 'score': 10.71}, {'connected_gene': 'NGB', 'score': 10.19}, {'connected_gene': 'MIR1260A', 'score': 10.16}, {'connected_gene': 'TMED8', 'score': 9.66}, {'connected_gene': 'SAMD15', 'score': 9.66}, {'connected_gene': 'ENSG00000269883', 'score': 0.44}, {'connected_gene': 'ZDHHC22', 'score': 0.39}, {'connected_gene': 'TMEM63C', 'score': 0.37}, {'connected_gene': 'ENSG00000259164', 'score': 0.28}]
chr14	GH14I077119	77119540	77125855	1.57	[{'connected_gene': 'CIPC', 'score': 18.34}, {'connected_gene': 'ENSG00000201384', 'score': 11.15}, {'connected_gene': 'LINC02289', 'score': 5.67}, {'connected_gene': 'LINC02288', 'score': 4.57}, {'connected_gene': 'IRF2BPL', 'score': 2.06}, {'connected_gene': 'TMED8', 'score': 1.23}, {'connected_gene': 'NGB', 'score': 1.19}, {'connected_gene': 'TMEM63C', 'score': 0.44}, {'connected_gene': 'ENSG00000269883', 'score': 0.37}, {'connected_gene': 'ENSG00000259164', 'score': 0.34}]
chr14	GH14I076987	76987710	76988451	0.31	[{'connected_gene': 'IRF2BPL', 'score': 12.16}, {'connected_gene': 'CIPC', 'score': 10.14}, {'connected_gene': 'NGB', 'score': 9.13}, {'connected_gene': 'LINC01629', 'score': 8.14}, {'connected_gene': 'GC14M076985', 'score': 0.77}, {'connected_gene': 'GC14P077023', 'score': 0.28}]
chr14	GH14I076996	76996471	77001495	1.44	[{'connected_gene': 'IRF2BPL', 'score': 15.22}, {'connected_gene': 'CIPC', 'score': 11.57}, {'connected_gene': 'LINC01629', 'score': 5.4}, {'connected_gene': 'VASH1', 'score': 2.34}, {'connected_gene': 'NGB', 'score': 1.89}, {'connected_gene': 'ZDHHC22', 'score': 1.15}, {'connected_gene': 'GC14M076985', 'score': 0.39}, {'connected_gene': 'GC14P077023', 'score': 0.34}]
chr14	GH14I077301	77301832	77308334	1.39	[{'connected_gene': 'VIPAS39', 'score': 24.31}, {'connected_gene': 'IRF2BPL', 'score': 16.36}, {'connected_gene': 'GSTZ1', 'score': 15.6}, {'connected_gene': 'ALKBH1', 'score': 13.09}, {'connected_gene': 'NGB', 'score': 11.62}, {'connected_gene': 'MIR1260A', 'score': 11.22}, {'connected_gene': 'ZDHHC22', 'score': 10.98}, {'connected_gene': 'ENSG00000201384', 'score': 10.97}, {'connected_gene': 'SAMD15', 'score': 10.85}, {'connected_gene': 'TMED8', 'score': 10.85}, {'connected_gene': 'AHSA1', 'score': 10.53}, {'connected_gene': 'SNW1', 'score': 10.45}, {'connected_gene': 'RPL21P10', 'score': 10.32}, {'connected_gene': 'CIPC', 'score': 9.66}, {'connected_gene': 'POMT2', 'score': 6.49}, {'connected_gene': 'SPTLC2', 'score': 4.43}, {'connected_gene': 'PIR44060', 'score': 0.77}]
chr14	GH14I076767	76767379	76769592	1.23	[{'connected_gene': 'VIPAS39', 'score': 47.73}, {'connected_gene': 'SNW1', 'score': 37.99}, {'connected_gene': 'ALKBH1', 'score': 37.6}, {'connected_gene': 'ZMYND19P1', 'score': 36.1}, {'connected_gene': 'GPATCH2L', 'score': 33.25}, {'connected_gene': 'RPL22P2', 'score': 32.55}, {'connected_gene': 'IRF2BPL', 'score': 24.3}, {'connected_gene': 'RPL21P10', 'score': 20.19}, {'connected_gene': 'POMT2', 'score': 19.55}, {'connected_gene': 'ENSG00000259081', 'score': 16.72}, {'connected_gene': 'VASH1', 'score': 11.56}, {'connected_gene': 'IFT43', 'score': 10.29}, {'connected_gene': 'NGB', 'score': 9.8}, {'connected_gene': 'ENSG00000258610', 'score': 0.39}]
chr14	GH14I077092	77092865	77094164	0.38	[{'connected_gene': 'TMEM63C', 'score': 11.99}, {'connected_gene': 'IRF2BPL', 'score': 9.86}, {'connected_gene': 'VASH1', 'score': 9.45}, {'connected_gene': 'NGB', 'score': 9.08}, {'connected_gene': 'LINC02288', 'score': 6.19}, {'connected_gene': 'LINC02289', 'score': 5.26}, {'connected_gene': 'GC14P077095', 'score': 0.77}, {'connected_gene': 'ENSG00000258473', 'score': 0.44}]
chr14	GH14I077157	77157961	77159105	1.18	[{'connected_gene': 'TMEM63C', 'score': 17.29}, {'connected_gene': 'POMT2', 'score': 13.28}, {'connected_gene': 'ENSG00000201384', 'score': 11.54}, {'connected_gene': 'NGB', 'score': 10.8}, {'connected_gene': 'NOXRED1', 'score': 10.08}, {'connected_gene': 'SNW1', 'score': 9.96}, {'connected_gene': 'ZDHHC22', 'score': 0.39}, {'connected_gene': 'FAM204DP', 'score': 0.37}, {'connected_gene': 'ENSG00000259164', 'score': 0.21}]
chr14	GH14I077181	77181049	77182535	2.05	[{'connected_gene': 'TMEM63C', 'score': 573.03}, {'connected_gene': 'ZDHHC22', 'score': 11.5}, {'connected_gene': 'NGB', 'score': 10.58}, {'connected_gene': 'FAM204DP', 'score': 0.44}, {'connected_gene': 'ENSG00000201384', 'score': 0.37}, {'connected_gene': 'GC14M077202', 'score': 0.37}, {'connected_gene': 'ENSG00000259164', 'score': 0.18}]
chr14	GH14I077210	77210495	77211537	0.2	[{'connected_gene': 'TMEM63C', 'score': 21.09}, {'connected_gene': 'MIR1260A', 'score': 11.48}, {'connected_gene': 'NGB', 'score': 11.0}, {'connected_gene': 'ENSG00000201384', 'score': 0.44}, {'connected_gene': 'GC14M077202', 'score': 0.44}, {'connected_gene': 'ENSG00000259164', 'score': 0.14}]
chr14	GH14I077308	77308498	77312342	0.49	[{'connected_gene': 'POMT2', 'score': 13.44}, {'connected_gene': 'NGB', 'score': 11.43}, {'connected_gene': 'TMED8', 'score': 10.86}, {'connected_gene': 'SAMD15', 'score': 10.86}, {'connected_gene': 'ENSG00000201384', 'score': 10.7}, {'connected_gene': 'TMEM63C', 'score': 10.48}, {'connected_gene': 'GSTZ1', 'score': 8.63}, {'connected_gene': 'PIR44060', 'score': 0.44}]
chr14	GH14I077296	77296133	77297241	0.69	[{'connected_gene': 'GSTZ1', 'score': 23.4}, {'connected_gene': 'POMT2', 'score': 18.15}, {'connected_gene': 'NGB', 'score': 12.0}, {'connected_gene': 'MIR1260A', 'score': 11.54}, {'connected_gene': 'ZDHHC22', 'score': 11.28}, {'connected_gene': 'ENSG00000201384', 'score': 10.97}, {'connected_gene': 'VIPAS39', 'score': 10.52}, {'connected_gene': 'AHSA1', 'score': 10.52}, {'connected_gene': 'CIPC', 'score': 9.66}, {'connected_gene': 'TMEM63C', 'score': 4.87}, {'connected_gene': 'PIR44060', 'score': 0.44}, {'connected_gene': 'PIR56307', 'score': 0.34}]
chr14	GH14I077299	77299452	77301807	0.92	[{'connected_gene': 'GSTZ1', 'score': 24.52}, {'connected_gene': 'POMT2', 'score': 18.14}, {'connected_gene': 'NGB', 'score': 11.64}, {'connected_gene': 'MIR1260A', 'score': 11.24}, {'connected_gene': 'ZDHHC22', 'score': 10.99}, {'connected_gene': 'ENSG00000201384', 'score': 10.97}, {'connected_gene': 'VIPAS39', 'score': 10.53}, {'connected_gene': 'AHSA1', 'score': 10.53}, {'connected_gene': 'CIPC', 'score': 9.66}, {'connected_gene': 'PIR44060', 'score': 0.77}, {'connected_gene': 'PIR56307', 'score': 0.34}]
chr14	GH14I077312	77312625	77318317	1.5	[{'connected_gene': 'TMED8', 'score': 23.4}, {'connected_gene': 'GSTZ1', 'score': 17.58}, {'connected_gene': 'NGB', 'score': 11.05}, {'connected_gene': 'ZDHHC22', 'score': 10.98}, {'connected_gene': 'ENSG00000201384', 'score': 10.7}, {'connected_gene': 'SAMD15', 'score': 10.69}, {'connected_gene': 'VIPAS39', 'score': 10.42}, {'connected_gene': 'AHSA1', 'score': 10.42}, {'connected_gene': 'TMEM63C', 'score': 10.0}, {'connected_gene': 'POMT2', 'score': 6.19}, {'connected_gene': 'PIR44060', 'score': 0.39}]
chr14	GH14I077502	77502218	77502367	0.8	[{'connected_gene': 'TMED8', 'score': 10.1}, {'connected_gene': 'SAMD15', 'score': 10.1}, {'connected_gene': 'NGB', 'score': 9.19}, {'connected_gene': 'ISM2', 'score': 6.84}, {'connected_gene': 'VIPAS39', 'score': 5.36}, {'connected_gene': 'GC14M077506', 'score': 0.77}]
chr14	GH14I077347	77347564	77348367	0.43	[{'connected_gene': 'TMED8', 'score': 11.61}, {'connected_gene': 'SAMD15', 'score': 11.61}, {'connected_gene': 'NGB', 'score': 10.21}, {'connected_gene': 'GC14M077351', 'score': 0.77}, {'connected_gene': 'PIR41624', 'score': 0.44}, {'connected_gene': 'GC14P077343', 'score': 0.44}]
chr14	GH14I077174	77173690	77173935	0.27	[{'connected_gene': 'FAM204DP', 'score': 550.77}, {'connected_gene': 'ZDHHC22', 'score': 12.56}, {'connected_gene': 'ENSG00000201384', 'score': 11.96}, {'connected_gene': 'MIR1260A', 'score': 10.95}, {'connected_gene': 'TMEM63C', 'score': 10.8}, {'connected_gene': 'NGB', 'score': 10.75}, {'connected_gene': 'GC14M077202', 'score': 0.31}, {'connected_gene': 'ENSG00000259164', 'score': 0.18}]
chr14	GH14I077173	77173256	77173349	0.22	[{'connected_gene': 'FAM204DP', 'score': 550.77}, {'connected_gene': 'ZDHHC22', 'score': 12.56}, {'connected_gene': 'ENSG00000201384', 'score': 11.96}, {'connected_gene': 'MIR1260A', 'score': 10.95}, {'connected_gene': 'TMEM63C', 'score': 10.8}, {'connected_gene': 'NGB', 'score': 10.75}, {'connected_gene': 'ENSG00000259164', 'score': 0.19}]
chr14	GH14I077208	77208818	77208967	1.09	[{'connected_gene': 'MIR1260A', 'score': 11.48}, {'connected_gene': 'NGB', 'score': 11.0}, {'connected_gene': 'TMEM63C', 'score': 10.64}, {'connected_gene': 'ENSG00000201384', 'score': 0.44}, {'connected_gene': 'GC14M077202', 'score': 0.44}, {'connected_gene': 'ENSG00000259164', 'score': 0.14}]
chr14	GH14I076915	76915760	76931071	2.14	[{'connected_gene': 'ENSG00000259058', 'score': 550.77}, {'connected_gene': 'IRF2BPL', 'score': 15.0}, {'connected_gene': 'ENSG00000243225', 'score': 7.84}, {'connected_gene': 'LINC01629', 'score': 7.72}, {'connected_gene': 'TGFB3-AS1', 'score': 4.93}, {'connected_gene': 'ZDHHC22', 'score': 2.57}, {'connected_gene': 'VASH1', 'score': 1.7}, {'connected_gene': 'NGB', 'score': 1.44}, {'connected_gene': 'CIPC', 'score': 1.18}, {'connected_gene': 'PIR46005', 'score': 0.34}]
chr14	GH14I077084	77084121	77090263	1.45	[{'connected_gene': 'ENSG00000258473', 'score': 550.77}, {'connected_gene': 'TMEM63C', 'score': 11.48}, {'connected_gene': 'IRF2BPL', 'score': 11.23}, {'connected_gene': 'VASH1', 'score': 9.45}, {'connected_gene': 'NGB', 'score': 9.07}, {'connected_gene': 'LINC02288', 'score': 6.86}, {'connected_gene': 'GC14P077095', 'score': 0.44}]
chr14	GH14I077104	77104205	77105971	0.63	[{'connected_gene': 'ENSG00000201384', 'score': 10.2}, {'connected_gene': 'POMT2', 'score': 10.02}, {'connected_gene': 'GSTZ1', 'score': 10.02}, {'connected_gene': 'NGB', 'score': 9.16}, {'connected_gene': 'CIPC', 'score': 6.76}, {'connected_gene': 'PIR36428', 'score': 0.77}, {'connected_gene': 'ENSG00000259164', 'score': 0.44}]
chr14	GH14I077106	77106472	77107471	0.2	[{'connected_gene': 'ENSG00000201384', 'score': 10.84}, {'connected_gene': 'POMT2', 'score': 10.03}, {'connected_gene': 'GSTZ1', 'score': 10.03}, {'connected_gene': 'NGB', 'score': 9.69}, {'connected_gene': 'LINC02288', 'score': 4.86}, {'connected_gene': 'PIR36428', 'score': 0.77}, {'connected_gene': 'ENSG00000259164', 'score': 0.44}, {'connected_gene': 'CIPC', 'score': 0.44}]