PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Promoter

Chrom	Start	End	Description
chr19	13056663	13056697	CAGE_peak_1_at_RAD23A_5end
chr19	13059063	13059104	CAGE_peak_2_at_RAD23A_5end
chr19	13059130	13059148	CAGE_peak_4_at_RAD23A_5end
chr19	13059546	13059573	CAGE_peak_3_at_RAD23A_5end
chr19	13059576	13059596	CAGE_peak_5_at_RAD23A_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr19	GH19I012955	12955815	12958117	2.03	[{'connected_gene': 'GADD45GIP1', 'score': 550.77}, {'connected_gene': 'MRI1', 'score': 18.98}, {'connected_gene': 'ZNF564', 'score': 17.06}, {'connected_gene': 'ZNF136', 'score': 15.42}, {'connected_gene': 'CCDC130', 'score': 13.64}, {'connected_gene': 'WDR83OS', 'score': 13.35}, {'connected_gene': 'ZNF442', 'score': 12.76}, {'connected_gene': 'ZNF709', 'score': 11.76}, {'connected_gene': 'ZNF625', 'score': 10.71}, {'connected_gene': 'ZNF799', 'score': 10.6}, {'connected_gene': 'ZNF788', 'score': 10.4}, {'connected_gene': 'ENSG00000242615', 'score': 10.34}, {'connected_gene': 'ZNF844', 'score': 10.02}, {'connected_gene': 'RPS6P25', 'score': 9.88}, {'connected_gene': 'TRIR', 'score': 9.83}, {'connected_gene': 'STX10', 'score': 4.83}, {'connected_gene': 'DNASE2', 'score': 4.47}, {'connected_gene': 'RAD23A', 'score': 0.39}]
chr19	GH19I013160	13160386	13174204	1.84	[{'connected_gene': 'CCDC130', 'score': 45.53}, {'connected_gene': 'ZNF799', 'score': 33.54}, {'connected_gene': 'ZNF44', 'score': 33.46}, {'connected_gene': 'ZNF791', 'score': 32.13}, {'connected_gene': 'TRIR', 'score': 31.74}, {'connected_gene': 'ZNF564', 'score': 28.78}, {'connected_gene': 'WDR83OS', 'score': 26.78}, {'connected_gene': 'ZNF442', 'score': 21.9}, {'connected_gene': 'TRMT1', 'score': 21.38}, {'connected_gene': 'DCAF15', 'score': 13.73}, {'connected_gene': 'MRI1', 'score': 12.74}, {'connected_gene': 'MAN2B1', 'score': 11.88}, {'connected_gene': 'RFX1', 'score': 11.15}, {'connected_gene': 'RPS6P25', 'score': 11.01}, {'connected_gene': 'LOC284454', 'score': 10.53}, {'connected_gene': 'LYL1', 'score': 9.37}, {'connected_gene': 'JUNB', 'score': 7.1}, {'connected_gene': 'RAD23A', 'score': 5.07}, {'connected_gene': 'HOOK2', 'score': 4.87}, {'connected_gene': 'ZNF709', 'score': 4.61}, {'connected_gene': 'STX10', 'score': 2.82}, {'connected_gene': 'NACC1', 'score': 1.84}, {'connected_gene': 'GADD45GIP1', 'score': 1.43}, {'connected_gene': 'BEST2', 'score': 1.19}, {'connected_gene': 'RPL12P42', 'score': 0.44}, {'connected_gene': 'GC19P013200', 'score': 0.29}]
chr19	GH19I012943	12943504	12950335	2.3	[{'connected_gene': 'RAD23A', 'score': 550.77}, {'connected_gene': 'CCDC130', 'score': 30.87}, {'connected_gene': 'ZNF564', 'score': 29.25}, {'connected_gene': 'WDR83OS', 'score': 24.59}, {'connected_gene': 'ZNF136', 'score': 23.47}, {'connected_gene': 'TRIR', 'score': 19.38}, {'connected_gene': 'MRI1', 'score': 18.98}, {'connected_gene': 'ZNF799', 'score': 18.79}, {'connected_gene': 'GCDH', 'score': 16.47}, {'connected_gene': 'ZNF44', 'score': 12.79}, {'connected_gene': 'ZNF442', 'score': 12.76}, {'connected_gene': 'ZNF878', 'score': 12.72}, {'connected_gene': 'ZNF433-AS1', 'score': 11.2}, {'connected_gene': 'MAN2B1', 'score': 10.58}, {'connected_gene': 'ZNF20', 'score': 10.22}, {'connected_gene': 'ZNF844', 'score': 10.02}, {'connected_gene': 'RPS6P25', 'score': 9.9}, {'connected_gene': 'TRMT1', 'score': 9.84}, {'connected_gene': 'ZNF763', 'score': 9.65}, {'connected_gene': 'HOOK2', 'score': 6.16}, {'connected_gene': 'CALR', 'score': 5.15}, {'connected_gene': 'ENSG00000267458', 'score': 0.77}, {'connected_gene': 'GADD45GIP1', 'score': 0.39}]
chr19	GH19I012951	12951569	12955472	1.18	[{'connected_gene': 'GCDH', 'score': 15.44}, {'connected_gene': 'HOOK2', 'score': 5.51}, {'connected_gene': 'DNASE2', 'score': 4.5}, {'connected_gene': 'GADD45GIP1', 'score': 0.77}, {'connected_gene': 'RAD23A', 'score': 0.44}]

Transcript ID	Transcript exon region	Coding exon region
ENST00000541222	[[13056668, 13056834], [13058661, 13058823], [13058990, 13059172], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13064083]]	[[13059522, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13063863]]
ENST00000591499	[[13056668, 13056834], [13058661, 13058823], [13058990, 13059172], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13064083]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059499, 13059512]]
ENST00000588329	[[13056679, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059973], [13060091, 13060096]]	None
ENST00000316856	[[13056689, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060091, 13060222], [13063502, 13063667], [13063749, 13064437]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060091, 13060222], [13063502, 13063667], [13063749, 13063863]]
ENST00000586534	[[13056701, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13064456]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13063863]]
ENST00000592268	[[13056705, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063749, 13064405]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063749, 13063863]]
ENST00000593114	[[13056707, 13056834], [13058661, 13058823], [13058990, 13059172], [13059327, 13059366], [13059499, 13059627], [13059894, 13059973], [13060091, 13060222], [13063502, 13063667], [13063749, 13064427]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059327, 13059331]]
ENST00000588826	[[13056818, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060091, 13060222], [13060312, 13060390]]	None
ENST00000586375	[[13059502, 13059627], [13060088, 13060222], [13063502, 13063667], [13063749, 13064219]]	[[13059502, 13059627], [13060088, 13060151]]
ENST00000590881	[[13059897, 13059973], [13060091, 13060222], [13063502, 13063634], [13063749, 13064409]]	[[13059897, 13059973], [13060091, 13060222], [13063502, 13063634], [13063749, 13063863]]
ENST00000591467	[[13063177, 13063667], [13063749, 13063804]]	None
NR_072976	[[13056627, 13056834], [13058661, 13058823], [13058990, 13059172], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13064457]]	None
NM_001270362	[[13056627, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060091, 13060222], [13063502, 13063667], [13063749, 13064457]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060091, 13060222], [13063502, 13063667], [13063749, 13063863]]
NM_001270363	[[13056627, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063749, 13064457]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063749, 13063863]]
NM_005053	[[13056627, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13064457]]	[[13056762, 13056834], [13058661, 13058823], [13058990, 13059172], [13059310, 13059366], [13059499, 13059627], [13059894, 13059973], [13060088, 13060222], [13063502, 13063667], [13063749, 13063863]]