PsyMuKB

PPI network (data source: BioGrid)

A gene is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the mean normalized expression(base 2 log of (TPM+1)) +1 in all brain tissue from GTEx v7 or BrainSpan data.

A protein is determined as “expressed” when its expression values are above the pre-determined cutoff, which is the normalized expression (base 10 log of iBAQ intensity) ≥0.5 in at least one brain tissue from ProteomicsDB data. Otherwise, a gene or protein is determined as either with below-cutoff expressions or no available data.

	The queried gene/protein
	The interacting partner is expressed at mRNA-level
	The interacting partner is expressed at protein-level
	The interacting partner is expressed at both mRNA and protein level
	The interacting partner is with either below-cutoff expressions or no expression data at both mRNA and protein level
	The interacting partner is hit by coding DNMs
	Physical interaction between queried gene/protein and its partner
	Physical interaction between two interacting partners

Symbol A	GeneA coding DNM count	Symbol B	GeneB coding DNM count	Interaction detection method	Publication	Evidence
PRKN	1	UBE2N	1	pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down	Joch M (2007), Olzmann JA (2007), Chaugule VK (2011), Sha D (2010), Lim GG (2013), Durcan TM (2011), McKeon JE (2014), Sha D (2010)	8
MAPK6	1	RAD23B	1	affinity chromatography technology, affinity chromatography technology	Rodriguez J (2016), Rodriguez J (2016)	2
UBE2V2	0	UBC	7	x-ray crystallography, pull down, x-ray crystallography, x-ray crystallography, pull down	McKenna S (2003), McKenna S (2003), McKenna S (2003), Lewis MJ (2006), McKenna S (2001)	5
PSMA2	1	PSMA3	1	affinity chromatography technology, biochemical, two hybrid, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical	Claverol S (2002), Apcher GS (2004), Jayarapu K (2004), Nandi D (1997), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015)	10
UBA2	0	PSMA3	1	biochemical	Wan C (2015)	1
EIF4A3	1	EEF1A1	0	affinity chromatography technology	Singh G (2012)	1
ELAVL1	0	MAPK6	1	affinity chromatography technology	Abdelmohsen K (2009)	1
RAD23B	1	SOX2	4	affinity chromatography technology, imaging technique	Fong YW (2011), Fong YW (2011)	2
TRIM25	5	PKM	1	affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017)	2
UBE3A	4	CALM1	0	affinity chromatography technology, pull down	Jung SY (2005), Kapoor I (2015)	2
KIAA0368	0	PSMC4	6	affinity chromatography technology	Gorbea C (2010)	1
NUBP2	0	UBXN7	3	biochemical	Havugimana PC (2012)	1
EGLN3	0	PSMC1	2	affinity chromatography technology	Rodriguez J (2016)	1
PSMC5	4	PSMA3	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC6	0	EEF1A1	0	biochemical	Wan C (2015)	1
TRIM25	5	ZYX	2	affinity chromatography technology	Choudhury NR (2017)	1
EGLN3	0	NUBP2	0	affinity chromatography technology	Rodriguez J (2016)	1
MAPK6	1	STUB1	4	affinity chromatography technology	Rodriguez J (2016)	1
RAD23A	1	EEF1A1	0	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Scanlon TC (2009), Chen L (2006), Chen L (2006)	3
MAPK6	1	UCHL5	1	affinity chromatography technology	Rodriguez J (2016)	1
EGLN3	0	PSMD1	2	affinity chromatography technology	Rodriguez J (2016)	1
UBE4B	5	UBL7	0	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	4
PSMD4	1	PSMD2	2	biochemical, biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Hamazaki J (2007), Havugimana PC (2012), Su V (2013), Kristensen AR (2012), Wan C (2015), Sparks A (2014)	6
PPIA	0	UBE2N	1	affinity chromatography technology	Hein MY (2015)	1
PSMC4	6	PSMC1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Um JW (2010), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	9
PSMC4	6	PSMD1	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017), Lu X (2017)	7
RAD23B	1	DBI	0	two hybrid	Vinayagam A (2011)	1
RPS21	0	UBE2V2	0	biochemical	Havugimana PC (2012)	1
PSMD2	2	UBQLN1	1	biochemical	Havugimana PC (2012)	1
PRKN	1	PSMB2	0	affinity chromatography technology	Sarraf SA (2013)	1
8339	0	RAD23B	1	bioid	Lambert JP (2015)	1
RAD23B	1	USP5	2	affinity chromatography technology, affinity chromatography technology	Chen L (2006), Chen L (2006)	2
MAPK6	1	PSMD4	1	affinity chromatography technology	Rodriguez J (2016)	1
EIF4A3	1	RAD23B	1	biochemical	Kristensen AR (2012)	1
UCHL5	1	PSMC6	0	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	5
SEM1	0	PSMC1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Krogan NJ (2004)	3
KIAA0368	0	PSMC5	4	biochemical	Kristensen AR (2012)	1
EGLN3	0	ADRM1	4	affinity chromatography technology	Rodriguez J (2016)	1
PRKN	1	MYO6	3	affinity chromatography technology	Sarraf SA (2013)	1
TRIM25	5	NPLOC4	4	affinity chromatography technology	Choudhury NR (2017)	1
TRIM14	1	STUB1	4	bioid	Tan P (2017)	1
UBE2V2	0	UBXN7	3	biochemical	Havugimana PC (2012)	1
CALM1	0	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
IGBP1	1	UBE4B	5	biochemical	Havugimana PC (2012)	1
MAPK6	1	VIM	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMC5	4	RAD23B	1	biochemical	Wan C (2015)	1
NTRK1	1	UBC	7	affinity chromatography technology	Emdal KB (2015)	1
EGLN3	0	PSMC5	4	affinity chromatography technology	Rodriguez J (2016)	1
PLIN3	3	RAD23B	1	biochemical	Kristensen AR (2012)	1
SEM1	0	PSMD2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Krogan NJ (2004), Krogan NJ (2004)	4
PSMA2	1	PSMD4	1	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015), Sparks A (2014), Sparks A (2014)	5
TRIM25	5	PPIA	0	affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017)	2
TRIM25	5	UBA2	0	affinity chromatography technology	Choudhury NR (2017)	1
RAD23B	1	DNAAF5	4	biochemical	Wan C (2015)	1
UBC	7	PSMB2	0	affinity chromatography technology	Matsumoto M (2005)	1
SOX2	4	CORO1B	6	affinity chromatography technology	Cox JL (2013)	1
UBXN7	3	NPLOC4	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Alexandru G (2008), Raman M (2015)	3
PDIA3	0	NMD3	2	biochemical	Wan C (2015)	1
USP25	0	UBC	7	enzymatic study, pull down, enzymatic study, pull down, pull down, pull down, enzymatic study, affinity chromatography technology, pull down, pull down, enzymatic study, pull down	Faesen AC (2011), Nathan JA (2013), Meulmeester E (2008), Meulmeester E (2008), Zhang X (2017), Yang Y (2017), Wrigley JD (2017), Kawaguchi K (2017), Kawaguchi K (2017), Kawaguchi K (2017), Kawaguchi K (2017), Kwasna D (2018)	12
NTRK1	1	UBE4B	5	affinity chromatography technology	Emdal KB (2015)	1
UBQLN2	0	UBC	7	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Chang L (2015), Hjerpe R (2016), Hjerpe R (2016)	3
CETN2	0	SPART	0	bioid	Gupta GD (2015)	1
NTRK1	1	AHSA1	0	affinity chromatography technology	Emdal KB (2015)	1
PSMD13	1	PSMD2	2	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMC6	0	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UCHL5	1	PSMD13	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	5
RAD23B	1	STUB1	4	biochemical	Havugimana PC (2012)	1
BRCA1	7	PHGDH	4	affinity chromatography technology	Ertych N (2016)	1
BRCA1	7	BLM	2	biochemical, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Acharya S (2014), Ertych N (2016)	3
BRCA1	7	PSMD1	2	affinity chromatography technology	Ertych N (2016)	1
SPR	1	UFM1	0	biochemical	Wan C (2015)	1
ATXN3	2	PSMC5	4	affinity chromatography technology	Wang H (2007)	1
MAPK6	1	PSMC1	2	affinity chromatography technology	Rodriguez J (2016)	1
RAD23A	1	PSMD2	2	affinity chromatography technology, biochemical	Scanlon TC (2009), Wan C (2015)	2
EGLN3	0	CBS	0	affinity chromatography technology	Rodriguez J (2016)	1
HMGB1	0	RAD23B	1	pull down	Lange SS (2009)	1
MAPK6	1	PSMA2	1	affinity chromatography technology	Rodriguez J (2016)	1
EEF1A1	0	PHGDH	4	biochemical	Havugimana PC (2012)	1
RPA1	0	RAD23B	1	pull down	Thoma BS (2005)	1
EWSR1	2	PPIA	0	bioid	Elzi DJ (2014)	1
ELAVL1	0	EWSR1	2	affinity chromatography technology	Abdelmohsen K (2009)	1
UBE2N	1	CBS	0	affinity chromatography technology	Boldt K (2016)	1
XPC	1	CETN2	0	biochemical, pull down, affinity chromatography technology, biochemical, bioid, affinity chromatography technology, affinity chromatography technology	Araki M (2001), Araki M (2001), Bunick CG (2006), Havugimana PC (2012), Gupta GD (2015), Huttlin EL (2017), Lan X (2016)	7
RAD23B	1	UBQLN1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RAD23B	1	PAX3	6	pull down	Boutet SC (2007)	1
BRCA1	7	EWSR1	2	affinity chromatography technology	Ertych N (2016)	1
PKM	1	CBS	0	biochemical	Kristensen AR (2012)	1
POU5F1	0	PSMD2	2	affinity chromatography technology	Oliviero G (2015)	1
PSMA2	1	DDI2	2	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
RAD23B	1	PDE12	2	biochemical	Kristensen AR (2012)	1
NTRK1	1	SEC24B	3	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	UBQLN2	0	affinity chromatography technology	Emdal KB (2015)	1
TRIM25	5	UBA1	1	affinity chromatography technology	Pauli EK (2014)	1
PSMB7	1	PSMD1	2	biochemical, affinity chromatography technology, biochemical	Havugimana PC (2012), Seifert U (2010), Wan C (2015)	3
HDAC6	0	RAD23B	1	affinity chromatography technology, affinity chromatography technology	New M (2013), New M (2013)	2
SEM1	0	STUB1	4	affinity chromatography technology	Besche HC (2014)	1
UBC	7	ADSL	5	affinity chromatography technology	Matsumoto M (2005)	1
DRAP1	2	SUMO3	0	biochemical	Kristensen AR (2012)	1
PSMC4	6	PSMC2	2	affinity chromatography technology, pull down, biochemical, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Hartmann-Petersen R (2001), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	8
UBE4B	5	UFM1	0	biochemical	Havugimana PC (2012)	1
AHSA1	0	PSMD2	2	affinity chromatography technology	Wolfgeher D (2015)	1
ABAT	3	RAD23B	1	biochemical	Wan C (2015)	1
UCHL5	1	PSMB7	1	affinity chromatography technology, biochemical	Yao T (2008), Wan C (2015)	2
ELAVL1	0	PPIL3	0	affinity chromatography technology	Abdelmohsen K (2009)	1
RAD23A	1	UBC	7	pull down, pull down, x-ray crystallography, pull down, x-ray crystallography, affinity chromatography technology, pull down, pull down, unspecified method, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down, x-ray crystallography, pull down, pull down, pull down, x-ray crystallography, pull down, pull down	Kang Y (2006), Sims JJ (2009), Kang Y (2007), Kang Y (2007), Wang Q (2003), Scanlon TC (2009), Raasi S (2003), Sokratous K (2012), Varadan R (2005), Fenner BJ (2009), Raasi S (2005), Massey LK (2004), Chen L (2006), Nathan JA (2013), Nathan JA (2013), Jung J (2014), Goh AM (2008), Castaneda CA (2013), Nakasone MA (2013), Lai MY (2012), Kristariyanto YA (2015), Zhang X (2017)	22
MAPK6	1	PSMC2	2	affinity chromatography technology	Rodriguez J (2016)	1
HDAC6	0	PSMC5	4	affinity chromatography technology	New M (2013)	1
RAD23A	1	PSMB2	0	affinity chromatography technology	Scanlon TC (2009)	1
PSMC1	2	PSMB7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	BLM	2	affinity chromatography technology	Rodriguez J (2016)	1
CBS	0	NMD3	2	biochemical	Wan C (2015)	1
UBA2	0	PDLIM5	0	biochemical	Kristensen AR (2012)	1
KIAA0368	0	PSMD4	1	affinity chromatography technology	Gorbea C (2010)	1
UBC	7	PSMB7	1	affinity chromatography technology	Matsumoto M (2005)	1
PRKN	1	RBM8A	2	affinity chromatography technology	Zanon A (2013)	1
ADRM1	4	UBC	7	x-ray crystallography, pull down, two hybrid, pull down, pull down, x-ray crystallography, pull down	Schreiner P (2008), Hennig J (2012), Husnjak K (2008), Sahtoe DD (2015), Chen X (2016), Chen X (2016), Zhang X (2017)	7
UBL7	0	ZYX	2	biochemical	Havugimana PC (2012)	1
PSMD13	1	PSMD1	2	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
CORO1B	6	ZYX	2	biochemical	Kristensen AR (2012)	1
TRIM14	1	PSMA2	1	bioid	Tan P (2017)	1
UBC	7	GTF2H1	0	pull down	Zhu Q (2004)	1
RAD23A	1	PSMC5	4	affinity chromatography technology, pull down	Scanlon TC (2009), Zhu Q (2004)	2
EWSR1	2	RAD23B	1	bioid	Elzi DJ (2014)	1
RAD23A	1	PSMA3	1	affinity chromatography technology	Scanlon TC (2009)	1
UBC	7	STUB1	4	affinity chromatography technology, affinity chromatography technology, enzymatic study, enzymatic study	Connell P (2001), Connell P (2001), Windheim M (2008), Zhang M (2005)	4
UBE3A	4	UBQLN1	1	two hybrid, affinity chromatography technology	Kleijnen MF (2000), Kleijnen MF (2000)	2
PSMC5	4	PSMD14	3	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015), Braunstein I (2015), Huttlin EL (2017)	7
XPNPEP1	4	RAD23B	1	biochemical	Kristensen AR (2012)	1
ABAT	3	ADSL	5	biochemical	Wan C (2015)	1
UBQLN4	2	UBQLN2	0	two hybrid	Lim J (2006)	1
PSMD14	3	PSMD1	2	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Jacobson AD (2014), Jacobson AD (2014), Wan C (2015), Hein MY (2015), Leznicki P (2015)	9
POU5F1	0	EEF1A1	0	affinity chromatography technology	Hawkins PG (2010)	1
UBE3A	4	MAPK6	1	affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Martinez-Noel G (2012), Martinez-Noel G (2012), Rodriguez J (2016), Rodriguez J (2016)	4
GTF2H1	0	XPC	1	affinity chromatography technology	Araujo SJ (2001)	1
NANOG	0	KIAA0368	0	affinity chromatography technology	Oliviero G (2015)	1
POU5F1	0	PSMD13	1	affinity chromatography technology	Oliviero G (2015)	1
PSMC4	6	ADRM1	4	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Lu X (2015), Huttlin EL (2017), Lu X (2017)	6
CBS	0	RAD23B	1	biochemical	Kristensen AR (2012)	1
TRIM25	5	ELAVL1	0	affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017)	2
PSMD13	1	ADRM1	4	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
GTF2H1	0	RPA1	0	affinity chromatography technology	Araujo SJ (2001)	1
PPIA	0	RAD23B	1	biochemical	Havugimana PC (2012)	1
PSMD14	3	PSMC2	2	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015), Sun S (2017)	7
SUMO3	0	UBA2	0	affinity chromatography technology	Li T (2006)	1
RAD23B	1	ADSL	5	biochemical	Kristensen AR (2012)	1
UCHL5	1	PKM	1	pull down	Fang Y (2011)	1
BRCA1	7	PSMC1	2	affinity chromatography technology	Ertych N (2016)	1
ADRM1	4	PSMB2	0	biochemical	Wan C (2015)	1
PSMD14	3	RAD23B	1	affinity chromatography technology	Wang X (2007)	1
EWSR1	2	RBM8A	2	affinity chromatography technology	Elzi DJ (2014)	1
UBA6	4	UBE4B	5	biochemical	Havugimana PC (2012)	1
ZYX	2	PDLIM5	0	two hybrid	Rolland T (2014)	1
UBC	7	SUMO3	0	affinity chromatography technology	Sahin U (2014)	1
UBQLN1	1	ATXN3	2	pull down	Heir R (2006)	1
TRIM25	5	KCTD3	2	affinity chromatography technology	Choudhury NR (2017)	1
KIAA0368	0	PSMC2	2	biochemical, affinity chromatography technology, imaging technique	Gorbea C (2010), Gorbea C (2010), Gorbea C (2010)	3
NPLOC4	4	EIF4A3	1	biochemical	Kristensen AR (2012)	1
SEM1	0	UBE3A	4	affinity chromatography technology, affinity chromatography technology	Besche HC (2014), Besche HC (2014)	2
PSMA2	1	PSMD2	2	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
NTRK1	1	MLH1	6	affinity chromatography technology	Emdal KB (2015)	1
UBA2	0	UBQLN2	0	biochemical	Havugimana PC (2012)	1
EEF1A1	0	KIAA0368	0	biochemical	Wan C (2015)	1
RAD23A	1	TACC3	1	biochemical	Havugimana PC (2012)	1
UBE2N	1	PDIA3	0	affinity chromatography technology	Boldt K (2016)	1
PSMC2	2	PSMB7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RAD23B	1	SEC24B	3	biochemical	Wan C (2015)	1
EEF1A1	0	CBS	0	biochemical	Wan C (2015)	1
UBC	7	PSMD13	1	pull down	Zhang X (2017)	1
PSMD14	3	PSMD2	2	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015), Sun S (2017)	6
PSMB7	1	PSMC6	0	affinity chromatography technology, biochemical	Huttlin EL (2015), Wan C (2015)	2
UBC	7	HIF1A	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Haque M (2013), Haque M (2013), Kuo YC (2015), Fan CM (1990), Mabjeesh NJ (2003)	5
UBC	7	XPC	1	affinity chromatography technology	Bish RA (2007)	1
PUF60	16	VIM	0	two hybrid	Stelzl U (2005)	1
SEM1	0	UCHL5	1	affinity chromatography technology	Besche HC (2014)	1
NTRK1	1	PSMC1	2	affinity chromatography technology	Emdal KB (2015)	1
EEF1A1	0	PKM	1	biochemical	Wan C (2015)	1
HDAC6	0	UBC	7	affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology	Pai MT (2007), Pozo FM (2011), Sekimoto T (2010), Kovacs JJ (2004), Hao R (2013), Lee JH (2013), Nakashima H (2014), Banerjee I (2014), Hao R (2013), Zhang X (2017), Yu Q (2018)	11
NTRK1	1	NANS	2	affinity chromatography technology	Emdal KB (2015)	1
PSMD1	2	PSMD2	2	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
USP25	0	KCTD10	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Huttlin EL (2017), Xu D (2017)	3
TRIM14	1	NPLOC4	4	bioid	Tan P (2017)	1
ADRM1	4	PSMD4	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Hamazaki J (2006), Jorgensen JP (2006), Jorgensen JP (2006), Berko D (2014), Huttlin EL (2015), Huttlin EL (2017), Sparks A (2014)	7
RNF185	1	PKM	1	affinity chromatography technology	Iioka H (2007)	1
PRKN	1	PSMD14	3	affinity chromatography technology	Sarraf SA (2013)	1
PDLIM5	0	RAD23B	1	biochemical	Kristensen AR (2012)	1
HDAC6	0	STUB1	4	affinity chromatography technology	Cook C (2012)	1
RBM8A	2	EIF4A3	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Chan CC (2004), Chan CC (2004), Singh G (2012), Singh G (2012), Izumi N (2010), Barbosa I (2012)	6
PSMD1	2	PSMC1	2	biochemical, biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Thompson D (2009), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	6
PHGDH	4	PLIN3	3	biochemical	Wan C (2015)	1
PSMD14	3	PSMC6	0	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Roelofs J (2009), Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015)	6
STUB1	4	PSMA3	1	affinity chromatography technology, affinity chromatography technology	Arndt V (2005), Meacham GC (2001)	2
PSMC1	2	PSMA2	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Barnes CJ (2005), Bousquet-Dubouch MP (2009), Wan C (2015), Sparks A (2014)	4
POU5F1	0	PSMB2	0	affinity chromatography technology	Oliviero G (2015)	1
UBE3A	4	UBQLN2	0	two hybrid, biochemical, affinity chromatography technology	Kleijnen MF (2000), Kleijnen MF (2000), Kleijnen MF (2000)	3
PSMD2	2	PSMC2	2	pull down, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, biochemical, affinity chromatography technology	Gorbea C (2000), Um JW (2010), Lee SH (2012), Shim SM (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Sun S (2017)	8
HDAC6	0	PSMD1	2	affinity chromatography technology	New M (2013)	1
HIST1H3A	3	RAD23B	1	bioid	Lambert JP (2015)	1
PSMA3	1	RAD23B	1	affinity chromatography technology	Fedorova OA (2011)	1
MAPK6	1	UBC	7	affinity chromatography technology	Rodriguez J (2016)	1
IGBP1	1	PPIA	0	biochemical	Havugimana PC (2012)	1
RAD23A	1	UBQLN1	1	x-ray crystallography, affinity chromatography technology, biochemical	Kang Y (2007), Kang Y (2007), Wan C (2015)	3
EGLN3	0	GTF2I	1	affinity chromatography technology	Rodriguez J (2016)	1
G6PD	0	MYO6	3	biochemical	Wan C (2015)	1
PRKN	1	PSMD2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Um JW (2010), Sarraf SA (2013), Sarraf SA (2013)	3
RPA1	0	GTF2I	1	affinity chromatography technology	Marechal A (2014)	1
PSMD14	3	STUB1	4	biochemical	Havugimana PC (2012)	1
BLM	2	PSMD1	2	genetic interference	Vizeacoumar FJ (2013)	1
NGLY1	0	RAD23B	1	x-ray crystallography, two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology	Kamiya Y (2012), Rolland T (2014), Christianson JC (2012), Wan C (2015), Huttlin EL (2017)	5
NGLY1	0	RAD23A	1	x-ray crystallography, two hybrid	Kamiya Y (2012), Rolland T (2014)	2
UBC	7	NPLOC4	4	affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Wang B (2003), Bish RA (2007), Kristariyanto YA (2015), Zhang X (2017)	5
TRIM25	5	UBQLN1	1	affinity chromatography technology	Choudhury NR (2017)	1
UBQLN2	0	RAD23A	1	biochemical	Wan C (2015)	1
PSMC6	0	PSMD1	2	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
UBL7	0	HDAC6	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2015), Huttlin EL (2017)	2
NTRK1	1	EWSR1	2	affinity chromatography technology	Emdal KB (2015)	1
VIM	0	ZYX	2	biochemical	Havugimana PC (2012)	1
HDAC6	0	PUF60	16	affinity chromatography technology	Joshi P (2013)	1
PSMD13	1	PSMC6	0	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
COMMD4	1	UCHL5	1	biochemical	Wan C (2015)	1
BLM	2	RPA1	0	pull down, enzymatic study, imaging technique, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Brosh RM (2000), Opresko PL (2002), Moens PB (2002), Meetei AR (2003), Meetei AR (2003), Meetei AR (2003), Wang J (2013), Marechal A (2014), Chaudhury I (2014), Elia AE (2015)	10
BRCA1	7	UBE3A	4	pull down	Wu-Baer F (2003)	1
PSMD13	1	PSMD14	3	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Ewing RM (2007), Sowa ME (2009), Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015)	7
BRCA1	7	UBA1	1	affinity chromatography technology	Ertych N (2016)	1
PSMA2	1	PSMC2	2	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
NUCB1	1	CBS	0	biochemical	Kristensen AR (2012)	1
PSMD4	1	XPC	1	pull down	He J (2014)	1
UBC	7	DDI2	2	pull down	Zhang X (2017)	1
SEM1	0	UBQLN2	0	affinity chromatography technology	Besche HC (2014)	1
RNF185	1	PSMC2	2	affinity chromatography technology	Iioka H (2007)	1
SPART	0	VIM	0	affinity chromatography technology	Milewska M (2009)	1
PSMD4	1	PSMC5	4	biochemical, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Hamazaki J (2007), Hamazaki J (2007), Thompson D (2009), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	6
RAD23A	1	UBA6	4	biochemical	Kristensen AR (2012)	1
NUCB1	1	GTF2I	1	biochemical	Kristensen AR (2012)	1
PSMB2	0	PSMD1	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
EGLN3	0	MAPK6	1	two hybrid, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang J (2011), Rodriguez J (2016), Rodriguez J (2016), Rodriguez J (2016), Rodriguez J (2016)	5
EGLN3	0	PSMD2	2	affinity chromatography technology	Rodriguez J (2016)	1
PSMC6	0	ADRM1	4	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
MED20	2	TRIM25	5	affinity chromatography technology	Lambert JP (2015)	1
TRIM14	1	AHSA1	0	bioid	Tan P (2017)	1
UBC	7	PSMC5	4	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Zhu Q (2004), Zhang X (2017)	3
NTRK1	1	PSMD2	2	affinity chromatography technology	Emdal KB (2015)	1
PSMA3	1	PSMB2	0	biochemical, biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	4
PSMA3	1	USP5	2	affinity chromatography technology	Fedorova OA (2011)	1
PSMD14	3	UBQLN1	1	affinity chromatography technology	Wang X (2007)	1
RAD23B	1	UBXN7	3	biochemical	Havugimana PC (2012)	1
NTRK1	1	GTF2I	1	affinity chromatography technology	Emdal KB (2015)	1
PSMB2	0	PSMD14	3	biochemical, affinity chromatography technology	Havugimana PC (2012), Wang X (2007)	2
NTRK1	1	UBA6	4	affinity chromatography technology	Emdal KB (2015)	1
XPNPEP1	4	NUCB1	1	biochemical	Kristensen AR (2012)	1
NTRK1	1	RAD23B	1	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	PUF60	16	affinity chromatography technology	Emdal KB (2015)	1
MED20	2	SPART	0	affinity chromatography technology	Lambert JP (2015)	1
PSMD13	1	PSMC2	2	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
PSMA2	1	UBA2	0	biochemical	Wan C (2015)	1
PKM	1	EGLN3	0	affinity chromatography technology, pull down	Luo W (2011), Luo W (2011)	2
RAD23B	1	PNMA5	0	two hybrid	Rolland T (2014)	1
PDLIM5	0	NPLOC4	4	biochemical	Kristensen AR (2012)	1
PSMD13	1	PSMA3	1	affinity chromatography technology, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Wan C (2015)	3
OTUD1	3	UBC	7	enzymatic study, pull down	Mevissen TE (2013), Kwasna D (2018)	2
UBC	7	UBA1	1	affinity chromatography technology, unspecified method, x-ray crystallography, biochemical, affinity chromatography technology, pull down	Nicassio F (2007), Zhao B (2012), Schaefer A (2014), Schaefer A (2014), Bish RA (2007), Zhang X (2017)	6
UBC	7	XPNPEP1	4	pull down	Nathan JA (2013)	1
NTRK1	1	PSMA3	1	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	UBXN7	3	affinity chromatography technology	Emdal KB (2015)	1
BRCA1	7	PSMC5	4	affinity chromatography technology	Ertych N (2016)	1
NTRK1	1	HMGB1	0	affinity chromatography technology	Emdal KB (2015)	1
NPLOC4	4	DNAAF5	4	biochemical	Kristensen AR (2012)	1
RPS21	0	PSMC6	0	biochemical	Kristensen AR (2012)	1
RNF185	1	UBQLN4	2	affinity chromatography technology	Iioka H (2007)	1
PSMC1	2	UBE3A	4	affinity chromatography technology	Hein MY (2015)	1
PDE12	2	ADSL	5	biochemical	Kristensen AR (2012)	1
RAD23A	1	PSMA2	1	affinity chromatography technology	Scanlon TC (2009)	1
IGBP1	1	RAD23B	1	biochemical	Havugimana PC (2012)	1
PDIA3	0	RAD23B	1	biochemical	Wan C (2015)	1
ELAVL1	0	CALM1	0	affinity chromatography technology	Abdelmohsen K (2009)	1
PRKN	1	RAD23B	1	affinity chromatography technology	Sarraf SA (2013)	1
KIAA0368	0	PSMC6	0	affinity chromatography technology, biochemical	Gorbea C (2010), Wan C (2015)	2
PSMB7	1	RAD23B	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
CALM1	0	RAD23B	1	pull down	Shen X (2005)	1
TRIM25	5	USP5	2	affinity chromatography technology	Choudhury NR (2017)	1
PHGDH	4	RAD23A	1	biochemical	Wan C (2015)	1
BRCA1	7	PDLIM5	0	affinity chromatography technology	Ertych N (2016)	1
SEM1	0	RPA1	0	pull down, x-ray crystallography	Zhao W (2015), Zhao W (2015)	2
UBQLN2	0	UBQLN1	1	two hybrid, affinity chromatography technology	Ford DL (2006), Ford DL (2006)	2
NUBP2	0	UBA6	4	biochemical	Kristensen AR (2012)	1
SEM1	0	RAD23B	1	affinity chromatography technology	Besche HC (2014)	1
NTRK1	1	RPA1	0	affinity chromatography technology	Emdal KB (2015)	1
UBC	7	UBA2	0	pull down	Gong L (1999)	1
CALM1	0	UCHL5	1	pull down	Shen X (2005)	1
TRIM25	5	NUBP2	0	affinity chromatography technology	Choudhury NR (2017)	1
NTRK1	1	PSMD1	2	affinity chromatography technology	Emdal KB (2015)	1
RAD23B	1	BRCA1	7	affinity chromatography technology	Chen L (2006)	1
MAPK6	1	PSMD13	1	affinity chromatography technology	Rodriguez J (2016)	1
MAPK6	1	PSMC4	6	affinity chromatography technology	Rodriguez J (2016)	1
TRIM25	5	STUB1	4	affinity chromatography technology	Choudhury NR (2017)	1
MED20	2	RAD23A	1	affinity chromatography technology	Lambert JP (2015)	1
XPNPEP1	4	UBA6	4	biochemical	Kristensen AR (2012)	1
UBC	7	PSMD14	3	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
RAD23B	1	PAQR3	2	affinity chromatography technology, affinity chromatography technology, pull down	You X (2017), You X (2017), You X (2017)	3
RPA1	0	VIM	0	two hybrid	Wang J (2011)	1
RNF185	1	UBQLN1	1	affinity chromatography technology	Iioka H (2007)	1
NTRK1	1	UBQLN1	1	affinity chromatography technology	Emdal KB (2015)	1
PKM	1	NANS	2	biochemical	Wan C (2015)	1
UBL7	0	RAD23B	1	affinity chromatography technology	Huttlin EL (2017)	1
TRIM25	5	XPNPEP1	4	affinity chromatography technology	Choudhury NR (2017)	1
MAD2L2	0	GTF2I	1	affinity chromatography technology	Vermeulen M (2010)	1
CDKN3	2	RAD23B	1	affinity chromatography technology	Li X (2016)	1
PKM	1	NPLOC4	4	biochemical	Kristensen AR (2012)	1
TRIM14	1	VIM	0	bioid	Tan P (2017)	1
UBL7	0	UBQLN1	1	biochemical	Havugimana PC (2012)	1
AHSA1	0	VIM	0	affinity chromatography technology	Wolfgeher D (2015)	1
SEM1	0	PSMD1	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Krogan NJ (2004)	3
PLIN3	3	EIF4A3	1	biochemical	Kristensen AR (2012)	1
ATXN3	2	KCTD10	1	affinity chromatography technology	Sowa ME (2009)	1
PSMC4	6	RAD23B	1	biochemical	Wan C (2015)	1
POU5F1	0	HMGB1	0	affinity chromatography technology, affinity chromatography technology	Butteroni C (2000), Hawkins PG (2010)	2
UBC	7	MYO6	3	affinity chromatography technology, affinity chromatography technology, pull down, x-ray crystallography, pull down	Matsumoto M (2005), Bish RA (2007), He F (2016), He F (2016), Zhang X (2017)	5
NTRK1	1	UBA2	0	affinity chromatography technology	Emdal KB (2015)	1
TRIM25	5	PSMA3	1	affinity chromatography technology	Choudhury NR (2017)	1
NTRK1	1	PPIA	0	affinity chromatography technology	Emdal KB (2015)	1
UCHL5	1	RAD23B	1	affinity chromatography technology	Sowa ME (2009)	1
PRKN	1	STUB1	4	affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Imai Y (2002), Imai Y (2002), Imai Y (2002), Imai Y (2003), Zhu X (2017)	5
IGBP1	1	NUBP2	0	biochemical	Havugimana PC (2012)	1
RAD23B	1	SUMO3	0	biochemical	Wan C (2015)	1
PSMA3	1	PSMC4	6	affinity chromatography technology, biochemical, biochemical	Fedorova OA (2011), Havugimana PC (2012), Wan C (2015)	3
UBC	7	PDE12	2	affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Nathan JA (2013), Zhang X (2017)	3
TRIM25	5	MAD2L2	0	affinity chromatography technology	Choudhury NR (2017)	1
PKM	1	PDLIM5	0	biochemical	Kristensen AR (2012)	1
BRCA1	7	RPA1	0	affinity chromatography technology, imaging technique, affinity chromatography technology	Suhasini AN (2011), Mok MT (2010), Tian F (2013)	3
RAD23A	1	RAD23B	1	biochemical, affinity chromatography technology	van der Spek PJ (1996), Hsieh HC (2005)	2
UBE3A	4	ADRM1	4	enzymatic study	Jacobson AD (2014)	1
RAD23B	1	PSMC2	2	affinity chromatography technology, biochemical, biochemical, pull down	Chen L (2006), Havugimana PC (2012), Wan C (2015), Sun S (2017)	4
NPLOC4	4	PLIN3	3	biochemical	Kristensen AR (2012)	1
GTF2I	1	ADSL	5	biochemical	Kristensen AR (2012)	1
PSMC6	0	PSMD2	2	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
NMD3	2	UBA1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
HIST1H3A	3	XPC	1	bioid, affinity chromatography technology	Lambert JP (2015), Huttlin EL (2017)	2
VIM	0	PNMA5	0	two hybrid	Rolland T (2014)	1
TRIM25	5	RPA1	0	affinity chromatography technology	Pauli EK (2014)	1
UBC	7	KCTD10	1	affinity chromatography technology	Matsumoto M (2005)	1
SEM1	0	PSMC4	6	affinity chromatography technology	Krogan NJ (2004)	1
PLIN3	3	UBA2	0	biochemical	Kristensen AR (2012)	1
RAD23B	1	G6PD	0	biochemical	Wan C (2015)	1
UBC	7	PSMC6	0	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
HDAC6	0	ATXN3	2	pull down	Bonanomi M (2014)	1
PKM	1	UBA2	0	biochemical	Kristensen AR (2012)	1
SPTA1	10	RPA1	0	affinity chromatography technology, affinity chromatography technology	Sridharan DM (2006), Sridharan DM (2006)	2
PKM	1	UFM1	0	biochemical	Wan C (2015)	1
CORO1C	2	CORO1B	6	biochemical, affinity chromatography technology	Kristensen AR (2012), Huttlin EL (2017)	2
TRIM14	1	RBM8A	2	bioid	Tan P (2017)	1
RAD23B	1	CETN2	0	affinity chromatography technology, bioid, affinity chromatography technology	Fong YW (2011), Gupta GD (2015), Lan X (2016)	3
RNF185	1	UBC	7	affinity chromatography technology	Iioka H (2007)	1
XPNPEP1	4	ADSL	5	biochemical	Kristensen AR (2012)	1
PSMC2	2	UBC	7	pull down, pull down	Jacobson AD (2014), Zhang X (2017)	2
UFM1	0	NPLOC4	4	biochemical	Kristensen AR (2012)	1
SUMO3	0	USP25	0	pull down, pull down	Meulmeester E (2008), Meulmeester E (2008)	2
IGBP1	1	STAT6	1	biochemical	Havugimana PC (2012)	1
PKM	1	PRKN	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, enzymatic study	Liu K (2016), Liu K (2016), Liu K (2016), Liu K (2016), Liu K (2016), Liu K (2016)	6
CETN2	0	PNMA5	0	two hybrid	Rolland T (2014)	1
TRIM14	1	G6PD	0	bioid	Tan P (2017)	1
ADRM1	4	PSMC5	4	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Hamazaki J (2006), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
ATXN3	2	STUB1	4	affinity chromatography technology, pull down, enzymatic study, enzymatic study, enzymatic study, enzymatic study, enzymatic study, affinity chromatography technology, affinity chromatography technology	Scaglione KM (2011), Scaglione KM (2011), Scaglione KM (2011), Todi SV (2010), Todi SV (2010), Gao XC (2011), Todi SV (2009), Kristensen LV (2018), Kristensen LV (2018)	9
HMGB1	0	XPC	1	pull down, affinity chromatography technology, affinity chromatography technology	Lange SS (2009), Lange SS (2009), Lange SS (2009)	3
EWSR1	2	PKM	1	bioid	Elzi DJ (2014)	1
NMD3	2	RAD23B	1	biochemical	Wan C (2015)	1
PKM	1	EIF4A3	1	biochemical	Kristensen AR (2012)	1
8339	0	PLIN3	3	bioid	Lambert JP (2015)	1
MAPK6	1	PSMB2	0	affinity chromatography technology	Rodriguez J (2016)	1
EGLN3	0	PSMD14	3	affinity chromatography technology	Rodriguez J (2016)	1
HMGCS1	0	RAD23B	1	biochemical	Wan C (2015)	1
EEF1A1	0	STAT6	1	two hybrid, biochemical	Wang J (2011), Wan C (2015)	2
BRCA1	7	ADRM1	4	affinity chromatography technology	Ertych N (2016)	1
HMGB1	0	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
PSMB7	1	ADRM1	4	biochemical	Wan C (2015)	1
PKM	1	RAD23B	1	biochemical	Kristensen AR (2012)	1
UBC	7	PSMA3	1	affinity chromatography technology	Matsumoto M (2005)	1
PSMC2	2	PSMC5	4	biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Tipler CP (1997), Kim YC (2011), Lee SH (2012), Lee SH (2012), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	7
ALDH2	2	RAD23B	1	genetic interference	Srivas R (2016)	1
SUMO3	0	VIM	0	two hybrid	Stelzl U (2005)	1
RAD23A	1	ADRM1	4	affinity chromatography technology	Scanlon TC (2009)	1
PRKN	1	PSMC5	4	affinity chromatography technology, pull down, affinity chromatography technology, affinity chromatography technology	Tsai YC (2003), Tsai YC (2003), Um JW (2010), Sarraf SA (2013)	4
UBE2N	1	STUB1	4	pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology, pull down, pull down, pull down	Zhang M (2005), Graf C (2010), Soss SE (2011), Huen MS (2008), Lim GG (2013), Taipale M (2014), Taipale M (2014), Zhu X (2014), Zhang M (2005), Zhang M (2005), Kim HT (2007), Blessing NA (2017)	12
UBE2N	1	UBA1	1	affinity chromatography technology, enzymatic study, enzymatic study, affinity chromatography technology	Huen MS (2008), Wu PY (2003), Wauer T (2015), Boldt K (2016)	4
UBE4B	5	UBXN7	3	biochemical	Havugimana PC (2012)	1
UBC	7	PSMD4	1	pull down, pull down, pull down, pull down, x-ray crystallography, affinity chromatography technology, x-ray crystallography, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, pull down, affinity chromatography technology, affinity chromatography technology, pull down, pull down, pull down	Fallon L (2006), Wang Q (2005), Leonchiks A (2002), Isasa M (2010), Wang Q (2005), Wang Q (2005), Haririnia A (2007), Fenner BJ (2009), Raasi S (2005), Nathan JA (2013), Beal R (1996), Uchiki T (2009), Young P (1998), Fujiwara K (2004), Dimitrov S (2005), Yoshimoto N (2009), Hawryluk MJ (2006), Nakayasu ES (2013), Nakayasu ES (2013), Tomaic V (2015), Aguileta MA (2015), Zhang X (2017), Kristariyanto YA (2017)	23
RAD23A	1	PSMD1	2	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Scanlon TC (2009), Chen L (2006), Wan C (2015), Tan X (2015)	4
PLIN3	3	EEF1A1	0	biochemical	Wan C (2015)	1
PUF60	16	EWSR1	2	affinity chromatography technology	Ewing RM (2007)	1
SEM1	0	PSMA2	1	affinity chromatography technology	Wei SJ (2008)	1
MAPK6	1	KIAA0368	0	affinity chromatography technology	Rodriguez J (2016)	1
UBE3A	4	UCHL5	1	enzymatic study, affinity chromatography technology, affinity chromatography technology	Jacobson AD (2014), Huttlin EL (2015), Huttlin EL (2017)	3
BRCA1	7	PSMC4	6	affinity chromatography technology	Ertych N (2016)	1
NTRK1	1	XPNPEP1	4	affinity chromatography technology	Emdal KB (2015)	1
PRKN	1	PSMB7	1	affinity chromatography technology	Sarraf SA (2013)	1
PSMB7	1	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC5	4	VIM	0	two hybrid	Albers M (2005)	1
POU5F1	0	KIAA0368	0	affinity chromatography technology	Oliviero G (2015)	1
SEM1	0	UBQLN4	2	affinity chromatography technology	Besche HC (2014)	1
PSMD14	3	PSMA3	1	affinity chromatography technology, affinity chromatography technology, biochemical	Roelofs J (2009), Wang X (2007), Wan C (2015)	3
HMGB1	0	PDIA3	0	affinity chromatography technology	Krynetski EY (2003)	1
AHSA1	0	RAD23B	1	biochemical	Wan C (2015)	1
PSMC4	6	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UBL7	0	UBC	7	x-ray crystallography, pull down, pull down	Chang YG (2006), Fenner BJ (2009), Zhang X (2017)	3
UBC	7	GTF2I	1	pull down	Zhang X (2017)	1
HDAC6	0	HIF1A	1	affinity chromatography technology	Qian DZ (2006)	1
TRIM14	1	PSMD4	1	bioid	Tan P (2017)	1
ELAVL1	0	PPIA	0	affinity chromatography technology	Abdelmohsen K (2009)	1
TRIM14	1	PSMD1	2	bioid	Tan P (2017)	1
BRCA1	7	GTF2I	1	pull down, affinity chromatography technology, affinity chromatography technology, imaging technique	Tanikawa M (2011), Tanikawa M (2011), Tanikawa M (2011), Tanikawa M (2011)	4
PSMD13	1	PSMD4	1	affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
NTRK1	1	EEF1A1	0	affinity chromatography technology	Emdal KB (2015)	1
AHSA1	0	UBA1	1	biochemical	Wan C (2015)	1
PSMD14	3	UBE3A	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang X (2007), Jacobson AD (2014), Jacobson AD (2014), Hein MY (2015)	4
NPLOC4	4	UBA2	0	biochemical	Kristensen AR (2012)	1
MAPK6	1	PSMC5	4	affinity chromatography technology	Rodriguez J (2016)	1
SEM1	0	PSMC5	4	affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Krogan NJ (2004)	2
PLIN3	3	PDLIM5	0	biochemical	Kristensen AR (2012)	1
PSMD1	2	ADRM1	4	pull down, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, unspecified method, affinity chromatography technology, affinity chromatography technology, unspecified method, affinity chromatography technology, x-ray crystallography, unspecified method	Hamazaki J (2006), Hendil KB (2009), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Lu X (2015), Lu X (2015), Huttlin EL (2017), Lu X (2017), Lu X (2017), Lu X (2017), VanderLinden RT (2017)	12
PSMA2	1	PSMC5	4	affinity chromatography technology, biochemical	Bousquet-Dubouch MP (2009), Wan C (2015)	2
NTRK1	1	CBS	0	affinity chromatography technology	Emdal KB (2015)	1
NANOG	0	PSMD2	2	affinity chromatography technology	Oliviero G (2015)	1
RAD23B	1	PSMD4	1	two hybrid, pull down, x-ray crystallography, affinity chromatography technology, pull down, x-ray crystallography, biochemical	Hiyama H (1999), Hiyama H (1999), Ryu KS (2003), Fatimababy AS (2010), Fatimababy AS (2010), Fujiwara K (2004), Wan C (2015)	7
BRCA1	7	UBE2N	1	two hybrid, x-ray crystallography, pull down, two hybrid, pull down	Christensen DE (2009), Christensen DE (2009), Christensen DE (2009), Christensen DE (2007), David Y (2011)	5
RPS21	0	PSMC2	2	biochemical	Kristensen AR (2012)	1
ELAVL1	0	UBQLN2	0	affinity chromatography technology	Abdelmohsen K (2009)	1
RAD23B	1	TACC3	1	biochemical	Havugimana PC (2012)	1
POU5F1	0	RAD23B	1	affinity chromatography technology, affinity chromatography technology, imaging technique, affinity chromatography technology	Fong YW (2011), Fong YW (2011), Fong YW (2011), Oliviero G (2015)	4
UBE4B	5	XPC	1	affinity chromatography technology	Li Y (2010)	1
RPS21	0	PSMC1	2	biochemical	Kristensen AR (2012)	1
UCHL5	1	PSMD1	2	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	6
SEM1	0	UBQLN1	1	affinity chromatography technology	Besche HC (2014)	1
UBQLN1	1	ADRM1	4	affinity chromatography technology, pull down, two hybrid	Fatimababy AS (2010), Fatimababy AS (2010), Lim J (2006)	3
PRKN	1	PSMC2	2	affinity chromatography technology, pull down	Sarraf SA (2013), Aguileta MA (2015)	2
PSMD14	3	ADRM1	4	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Kristensen AR (2012), Wang X (2007), Jacobson AD (2014), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	7
RAD23A	1	UBE2N	1	affinity chromatography technology	Scanlon TC (2009)	1
BRCA1	7	PKM	1	affinity chromatography technology	Ertych N (2016)	1
NTRK1	1	UCHL5	1	affinity chromatography technology	Emdal KB (2015)	1
PSMC5	4	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
KIAA0368	0	UCHL5	1	biochemical	Kristensen AR (2012)	1
RAD23A	1	PRKN	1	enzymatic study, affinity chromatography technology	Scanlon TC (2009), Sarraf SA (2013)	2
MED20	2	CORO1C	2	affinity chromatography technology	Lambert JP (2015)	1
TRIM25	5	MAPK6	1	affinity chromatography technology	Choudhury NR (2017)	1
MAPK6	1	PSMD14	3	affinity chromatography technology	Rodriguez J (2016)	1
PSMC2	2	PSMC6	0	biochemical, biochemical, biochemical, biochemical	Tipler CP (1997), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
EWSR1	2	IGBP1	1	bioid	Elzi DJ (2014)	1
NTRK1	1	USP5	2	affinity chromatography technology	Emdal KB (2015)	1
UBC	7	CBS	0	affinity chromatography technology	Matsumoto M (2005)	1
EGLN3	0	MYO6	3	affinity chromatography technology	Rodriguez J (2016)	1
UBXN7	3	KCTD10	1	affinity chromatography technology	Raman M (2015)	1
NPLOC4	4	CBS	0	biochemical	Kristensen AR (2012)	1
PSMD4	1	RPA1	0	affinity chromatography technology	Galanty Y (2012)	1
UBE3A	4	UBC	7	enzymatic study, enzymatic study, pull down	Schwarz SE (1998), Ronchi VP (2013), Zhang X (2017)	3
PRKN	1	ADRM1	4	affinity chromatography technology, affinity chromatography technology, two hybrid, x-ray crystallography, pull down	Sarraf SA (2013), Sarraf SA (2013), Aguileta MA (2015), Aguileta MA (2015), Aguileta MA (2015)	5
ELAVL1	0	RAD23B	1	affinity chromatography technology	Abdelmohsen K (2009)	1
STUB1	4	UBE2V2	0	biochemical	Havugimana PC (2012)	1
NANS	2	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
SEM1	0	PSMD14	3	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Wei SJ (2008), Wang X (2007)	4
BRCA1	7	MLH1	6	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Cannavo E (2007), Suhasini AN (2011), Hill SJ (2014)	4
EGLN3	0	NPLOC4	4	affinity chromatography technology	Rodriguez J (2016)	1
NTRK1	1	ADSL	5	affinity chromatography technology	Emdal KB (2015)	1
XPC	1	RAD23B	1	biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Araki M (2001), Bunick CG (2006), Masutani C (1997), Sugasawa K (1998), Sugasawa K (1997), Sugasawa K (1997), Batty D (2000), Li L (1997), Fong YW (2011), Krzeszinski JY (2013), Krzeszinski JY (2013), Bergink S (2012), Bergink S (2012), Huttlin EL (2017), You X (2017)	15
OTUD1	3	RAD23A	1	affinity chromatography technology	Sowa ME (2009)	1
UBC	7	PSMD2	2	pull down	Zhang X (2017)	1
BRCA1	7	UCHL5	1	affinity chromatography technology	Ertych N (2016)	1
ELAVL1	0	UBE2N	1	affinity chromatography technology	Abdelmohsen K (2009)	1
PSMD14	3	PSMC1	2	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015), Hein MY (2015)	7
RAD23B	1	SPR	1	biochemical	Havugimana PC (2012)	1
PSMA3	1	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
XPNPEP1	4	PDE12	2	biochemical	Kristensen AR (2012)	1
RAD23A	1	SEM1	0	affinity chromatography technology, affinity chromatography technology	Scanlon TC (2009), Besche HC (2014)	2
EWSR1	2	SUMO3	0	affinity chromatography technology	Elzi DJ (2014)	1
ELAVL1	0	HDAC6	0	affinity chromatography technology, affinity chromatography technology	Scott GK (2008), Scott GK (2008)	2
PSMD13	1	PSMC5	4	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	5
PSMC2	2	PSMA3	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
NTRK1	1	PSMC4	6	affinity chromatography technology	Emdal KB (2015)	1
PSMD4	1	PAX3	6	affinity chromatography technology	Boutet SC (2007)	1
PSMB7	1	PSMD14	3	biochemical, affinity chromatography technology	Havugimana PC (2012), Wang X (2007)	2
UCHL5	1	PSMC1	2	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	6
MLH1	6	RAD23B	1	two hybrid	Brieger A (2010)	1
PSMA2	1	PSMD14	3	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology	Bousquet-Dubouch MP (2009), Wang X (2007), Wan C (2015), Sparks A (2014)	4
NTRK1	1	PDIA3	0	affinity chromatography technology	Emdal KB (2015)	1
ADRM1	4	PSMA3	1	biochemical	Wan C (2015)	1
MED20	2	RAD23B	1	affinity chromatography technology	Lambert JP (2015)	1
PSMA2	1	PSMC4	6	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
PSMB2	0	PSMB7	1	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
MAD2L2	0	RAD23B	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, imaging technique	Bhat A (2017), Bhat A (2017), Bhat A (2017), Bhat A (2017)	4
IGBP1	1	PRDX5	0	biochemical	Havugimana PC (2012)	1
CORO1C	2	PDIA3	0	biochemical	Wan C (2015)	1
CORO1C	2	RPA1	0	biochemical	Wan C (2015)	1
NTRK1	1	EIF4A3	1	affinity chromatography technology	Emdal KB (2015)	1
UBC	7	UCHL5	1	affinity chromatography technology, enzymatic study, pull down, enzymatic study, pull down, pull down, enzymatic study, pull down, x-ray crystallography, pull down	Matsumoto M (2005), Boudreaux D (2012), Sahtoe DD (2015), Flierman D (2016), Zhang X (2017), Kwasna D (2018), Lee YC (2017), Lee YC (2017), Lee YC (2017), Hanpude P (2017)	10
SEM1	0	PSMD4	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Krogan NJ (2004), Krogan NJ (2004)	3
CBS	0	UBA2	0	biochemical	Kristensen AR (2012)	1
UBC	7	UBE2N	1	affinity chromatography technology, enzymatic study, enzymatic study, x-ray crystallography, enzymatic study, enzymatic study, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, enzymatic study, pull down	Matsumoto M (2005), Scheper J (2010), Wu PY (2003), McKenna S (2003), Wiener R (2012), Ye Y (2003), Bish RA (2007), Juang YC (2012), Pastushok L (2007), Singh RK (2012), McKenna S (2001), McKenna S (2001)	12
PSMA3	1	PKM	1	affinity chromatography technology	Fedorova OA (2011)	1
RAD23B	1	VIM	0	affinity chromatography technology, affinity chromatography technology	Chen L (2006), Chen L (2006)	2
PSMA3	1	PUF60	16	affinity chromatography technology	Fedorova OA (2011)	1
PSMC4	6	PSMB7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
MLH1	6	BLM	2	biochemical, pull down, two hybrid, far western blotting, affinity chromatography technology, far western blotting, two hybrid, affinity chromatography technology, far western blotting, two hybrid, unspecified method, affinity chromatography technology, affinity chromatography technology	Wang Y (2000), Langland G (2001), Langland G (2001), Langland G (2001), Langland G (2001), Freire R (2001), Pedrazzi G (2001), Pedrazzi G (2001), Pedrazzi G (2001), Dherin C (2009), Dherin C (2009), Meetei AR (2003), Meetei AR (2003)	13
HIST1H3A	3	HDAC6	0	pull down	Li X (2014)	1
UBQLN2	0	PSMC1	2	pull down	Aguileta MA (2015)	1
PSMA2	1	KIAA0368	0	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
RAD23B	1	UBE2V2	0	biochemical	Havugimana PC (2012)	1
SPR	1	PRDX5	0	biochemical	Wan C (2015)	1
TRIM14	1	RAD23B	1	bioid	Tan P (2017)	1
PSMD13	1	RPS21	0	biochemical	Kristensen AR (2012)	1
PSMC5	4	PSMC6	0	pull down, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Hartmann-Petersen R (2001), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	6
MAPK6	1	PSMD2	2	affinity chromatography technology	Rodriguez J (2016)	1
RPS21	0	PSMD1	2	biochemical	Kristensen AR (2012)	1
PSMD4	1	PPIA	0	biochemical	Wan C (2015)	1
UBA2	0	PDE12	2	biochemical	Kristensen AR (2012)	1
NUBP2	0	STUB1	4	biochemical	Havugimana PC (2012)	1
RAD23B	1	ADRM1	4	affinity chromatography technology, pull down	Fatimababy AS (2010), Fatimababy AS (2010)	2
UBXN7	3	ZYX	2	biochemical	Havugimana PC (2012)	1
PDLIM5	0	EIF4A3	1	biochemical	Kristensen AR (2012)	1
EGLN3	0	PHGDH	4	affinity chromatography technology	Rodriguez J (2016)	1
USP25	0	BTBD9	2	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Huttlin EL (2017)	2
PRKN	1	EEF1A1	0	affinity chromatography technology	Zanon A (2013)	1
RAD23A	1	DBI	0	two hybrid	Vinayagam A (2011)	1
XPNPEP1	4	PUF60	16	biochemical	Wan C (2015)	1
SEM1	0	BRCA1	7	two hybrid	Gudmundsdottir K (2007)	1
NTRK1	1	PDLIM5	0	affinity chromatography technology	Emdal KB (2015)	1
NTRK1	1	UBE3A	4	affinity chromatography technology	Emdal KB (2015)	1
EGLN3	0	BRCA1	7	affinity chromatography technology	Rodriguez J (2016)	1
PSMB7	1	PSMD4	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
SNRPF	0	PUF60	16	two hybrid, two hybrid	Hegele A (2012), Hegele A (2012)	2
IGBP1	1	UBQLN2	0	biochemical	Havugimana PC (2012)	1
PSMB2	0	PSMD4	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
NTRK1	1	PSMD13	1	affinity chromatography technology	Emdal KB (2015)	1
RNF185	1	PSMC5	4	affinity chromatography technology	Iioka H (2007)	1
UBE2V2	0	UFM1	0	biochemical	Havugimana PC (2012)	1
TRIM25	5	EGLN3	0	affinity chromatography technology	Choudhury NR (2017)	1
PSMD2	2	RAD23B	1	biochemical, biochemical, affinity chromatography technology	Havugimana PC (2012), Wan C (2015), Sun S (2017)	3
BRCA1	7	PSMD13	1	affinity chromatography technology	Ertych N (2016)	1
RAD23B	1	HIF1A	1	affinity chromatography technology	Bandau S (2012)	1
EWSR1	2	GTF2I	1	affinity chromatography technology	Elzi DJ (2014)	1
ATXN3	2	EWSR1	2	two hybrid	Lim J (2006)	1
AHSA1	0	NMD3	2	biochemical	Wan C (2015)	1
PSMB2	0	PSMD13	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
UCHL5	1	PSMC4	6	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	5
PSMA3	1	PSMB7	1	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	5
UBQLN2	0	ADSL	5	biochemical	Kristensen AR (2012)	1
IGBP1	1	SNRPF	0	biochemical	Havugimana PC (2012)	1
EWSR1	2	AHSA1	0	bioid	Elzi DJ (2014)	1
ELAVL1	0	HIF1A	1	affinity chromatography technology, unspecified method	Galban S (2008), Galban S (2008)	2
RAD23B	1	DEAF1	12	two hybrid	Vinayagam A (2011)	1
PSMD13	1	PSMC1	2	affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015)	5
TRIM14	1	UBE2N	1	two hybrid	Tan P (2017)	1
SEM1	0	UBC	7	affinity chromatography technology	Besche HC (2014)	1
USP5	2	UBC	7	pull down, affinity chromatography technology, enzymatic study, enzymatic study, enzymatic study, pull down, pull down, pull down, pull down, pull down, pull down, unspecified method, affinity chromatography technology, pull down, x-ray crystallography, pull down, pull down, pull down, enzymatic study, enzymatic study, pull down, pull down	Reyes-Turcu FE (2008), Nicassio F (2007), Zhang YH (2012), Bremm A (2010), Komander D (2009), Melandri F (1996), Sokratous K (2012), Fenner BJ (2009), Schulz S (2012), Raasi S (2005), Nathan JA (2013), Ernst A (2013), Bish RA (2007), Reyes-Turcu FE (2006), Reyes-Turcu FE (2006), Zhang YH (2012), Liu Y (2014), Scott D (2015), Flierman D (2016), Castaneda CA (2016), Zhang X (2017), Kwasna D (2018)	22
RAD23B	1	KCTD10	1	affinity chromatography technology	Huttlin EL (2017)	1
G6PD	0	UFM1	0	biochemical	Wan C (2015)	1
EGLN3	0	PSMD13	1	affinity chromatography technology	Rodriguez J (2016)	1
PRKN	1	PSMD13	1	affinity chromatography technology	Sarraf SA (2013)	1
UBQLN2	0	PDE12	2	biochemical	Kristensen AR (2012)	1
ELAVL1	0	MED20	2	affinity chromatography technology	Abdelmohsen K (2009)	1
SPTA1	10	RAD23B	1	affinity chromatography technology, affinity chromatography technology	Sridharan DM (2006), Sridharan DM (2006)	2
ELAVL1	0	SNRPF	0	affinity chromatography technology	Abdelmohsen K (2009)	1
GTF2H1	0	RAD23B	1	affinity chromatography technology	Araujo SJ (2001)	1
TRIM14	1	PSMB7	1	bioid	Tan P (2017)	1
HDAC6	0	EEF1A1	0	affinity chromatography technology	Watson GW (2016)	1
RAD23B	1	MYO6	3	biochemical	Wan C (2015)	1
MLH1	6	UBC	7	affinity chromatography technology	Cannavo E (2007)	1
TRIM25	5	GTF2H1	0	affinity chromatography technology	Choudhury NR (2017)	1
RAD23A	1	PSMC2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical	Scanlon TC (2009), Chen L (2006), Tsai NP (2012), Wan C (2015)	4
MAPK6	1	SPART	0	affinity chromatography technology	Rodriguez J (2016)	1
BRCA1	7	PSMD14	3	affinity chromatography technology	Ertych N (2016)	1
RAD23B	1	BTBD9	2	affinity chromatography technology	Huttlin EL (2017)	1
NUBP2	0	PSMD4	1	biochemical	Havugimana PC (2012)	1
RAD23B	1	STAT6	1	biochemical	Havugimana PC (2012)	1
PRDX5	0	RAD23B	1	biochemical	Havugimana PC (2012)	1
EGLN3	0	NUCB1	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMC1	2	PSMA3	1	affinity chromatography technology, biochemical, biochemical	Barnes CJ (2005), Havugimana PC (2012), Wan C (2015)	3
RAD23A	1	PSMC1	2	affinity chromatography technology, biochemical	Scanlon TC (2009), Wan C (2015)	2
PRKN	1	PSMC6	0	affinity chromatography technology	Sarraf SA (2013)	1
EGLN3	0	KCTD3	2	affinity chromatography technology	Rodriguez J (2016)	1
PPIL3	0	RAD23B	1	biochemical	Havugimana PC (2012)	1
RAD23A	1	PSMD4	1	two hybrid, pull down, x-ray crystallography, pull down, x-ray crystallography, x-ray crystallography, x-ray crystallography, affinity chromatography technology, affinity chromatography technology	Hiyama H (1999), Mueller TD (2003), Kang Y (2007), Kang Y (2007), Wang Q (2003), Walters KJ (2003), Walters KJ (2002), Scanlon TC (2009), Hsieh HC (2005)	9
UBE3A	4	PDIA3	0	pull down	Kapoor I (2015)	1
TRIM25	5	PSMB7	1	affinity chromatography technology	Choudhury NR (2017)	1
PSMC5	4	PSMC1	2	pull down, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Hartmann-Petersen R (2001), Kim YC (2011), Kim YC (2011), Lee SH (2012), Havugimana PC (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	9
NUCB1	1	RAD23B	1	biochemical	Kristensen AR (2012)	1
PRKN	1	PSMA2	1	affinity chromatography technology	Sarraf SA (2013)	1
PSMD14	3	UBA1	1	affinity chromatography technology, affinity chromatography technology	Jacobson AD (2014), Jacobson AD (2014)	2
GTF2I	1	RAD23B	1	biochemical	Kristensen AR (2012)	1
PDIA3	0	NANS	2	biochemical	Kristensen AR (2012)	1
UCHL5	1	PSMD4	1	affinity chromatography technology, pull down, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Qiu XB (2006), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	6
TRIM14	1	PSMC4	6	bioid	Tan P (2017)	1
PSMA2	1	UCHL5	1	affinity chromatography technology, affinity chromatography technology, biochemical	Bousquet-Dubouch MP (2009), Yao T (2008), Wan C (2015)	3
RPS21	0	ADRM1	4	biochemical	Kristensen AR (2012)	1
UBXN7	3	HIF1A	1	affinity chromatography technology, affinity chromatography technology	Alexandru G (2008), Bandau S (2012)	2
RAD23B	1	EEF1A1	0	affinity chromatography technology	Chen L (2006)	1
HIF1A	1	EGLN3	0	pull down, pull down, affinity chromatography technology, two hybrid, imaging technique, pull down, affinity chromatography technology, affinity chromatography technology	Baek JH (2005), Yoo YG (2008), Yeh IJ (2013), Rolland T (2014), Rantanen K (2013), Barth S (2007), Rodriguez J (2016), Rodriguez J (2016)	8
NPLOC4	4	UBE3A	4	biochemical	Kristensen AR (2012)	1
NTRK1	1	PKM	1	affinity chromatography technology	Emdal KB (2015)	1
EGLN3	0	PDE12	2	affinity chromatography technology	Rodriguez J (2016)	1
EGLN3	0	STUB1	4	affinity chromatography technology	Rodriguez J (2016)	1
RAD23A	1	UBA1	1	affinity chromatography technology, affinity chromatography technology	Chen L (2006), Chen L (2006)	2
RAD23A	1	CORO1B	6	biochemical	Wan C (2015)	1
UBE4B	5	UBQLN1	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
KCTD3	2	RAD23B	1	affinity chromatography technology	Huttlin EL (2017)	1
EGLN3	0	UCHL5	1	affinity chromatography technology	Rodriguez J (2016)	1
BRCA1	7	KIAA0368	0	affinity chromatography technology	Ertych N (2016)	1
ELAVL1	0	UBA6	4	affinity chromatography technology	Abdelmohsen K (2009)	1
NTRK1	1	DNAAF5	4	affinity chromatography technology	Emdal KB (2015)	1
ABAT	3	CBS	0	biochemical	Wan C (2015)	1
TRIM14	1	ZYX	2	bioid	Tan P (2017)	1
PHGDH	4	UBE2N	1	biochemical	Wan C (2015)	1
SPART	0	PLIN3	3	two hybrid, affinity chromatography technology, pull down	Eastman SW (2009), Eastman SW (2009), Tokunaga M (2013)	3
UBE4B	5	STUB1	4	biochemical	Wan C (2015)	1
RAD23B	1	USP25	0	affinity chromatography technology, affinity chromatography technology	Huttlin EL (2017), Xu D (2017)	2
RAD23B	1	UFM1	0	biochemical	Havugimana PC (2012)	1
UBE4B	5	RAD23A	1	pull down	Goh AM (2008)	1
RPA1	0	UBC	7	affinity chromatography technology	Marechal A (2014)	1
PSMC6	0	UFM1	0	biochemical	Havugimana PC (2012)	1
BRCA1	7	PSMD4	1	affinity chromatography technology	Ertych N (2016)	1
BRCA1	7	TRIM25	5	affinity chromatography technology	Ertych N (2016)	1
NPLOC4	4	PDE12	2	biochemical	Kristensen AR (2012)	1
EGLN3	0	PSMC6	0	affinity chromatography technology	Rodriguez J (2016)	1
NTRK1	1	PSMA2	1	affinity chromatography technology	Emdal KB (2015)	1
PSMD4	1	UBQLN4	2	pull down, affinity chromatography technology, affinity chromatography technology	Riley BE (2004), Li X (2008), Su V (2013)	3
TRIM25	5	PSMD1	2	affinity chromatography technology, affinity chromatography technology	Choudhury NR (2017), Choudhury NR (2017)	2
NTRK1	1	PHGDH	4	affinity chromatography technology	Emdal KB (2015)	1
HDAC6	0	PKM	1	affinity chromatography technology, affinity chromatography technology	New M (2013), Watson GW (2016)	2
MLH1	6	USP5	2	biochemical	Wan C (2015)	1
RAD23B	1	UBE2N	1	biochemical	Wan C (2015)	1
EIF4A3	1	VIM	0	affinity chromatography technology	Singh G (2012)	1
PSMB2	0	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
STAT6	1	PDE12	2	biochemical	Kristensen AR (2012)	1
MAPK6	1	PHGDH	4	two hybrid	Vinayagam A (2011)	1
NTRK1	1	HDAC6	0	affinity chromatography technology	Emdal KB (2015)	1
NANOG	0	RAD23B	1	affinity chromatography technology	Oliviero G (2015)	1
RAD23B	1	SNRPF	0	biochemical	Havugimana PC (2012)	1
PSMD4	1	PSMD1	2	affinity chromatography technology, biochemical, biochemical, biochemical	Hendil KB (2009), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	4
UBQLN1	1	NGLY1	0	two hybrid	Rolland T (2014)	1
RAD23A	1	SUMO3	0	biochemical	Wan C (2015)	1
RAD23B	1	KIAA0368	0	biochemical	Wan C (2015)	1
RAD23B	1	UBA1	1	affinity chromatography technology	Chen L (2006)	1
EEF1A1	0	PUF60	16	biochemical	Havugimana PC (2012)	1
UBE2N	1	VIM	0	affinity chromatography technology	Boldt K (2016)	1
UBQLN4	2	UBC	7	pull down	Su V (2010)	1
NTRK1	1	PSMC5	4	affinity chromatography technology	Emdal KB (2015)	1
STUB1	4	USP5	2	biochemical	Wan C (2015)	1
UBC	7	UBQLN1	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, pull down, two hybrid, pull down, two hybrid, pull down, pull down, affinity chromatography technology, pull down, pull down, affinity chromatography technology	Matsumoto M (2005), Ko HS (2004), Ko HS (2004), Sokratous K (2012), Raasi S (2005), Raasi S (2005), Massey LK (2004), Ko HS (2004), Ko HS (2004), Rolland T (2014), Castaneda CA (2013), Nakayasu ES (2013), Nakayasu ES (2013), Kristariyanto YA (2015), Kristariyanto YA (2015), Kurlawala Z (2017)	16
RAD23B	1	UBE3A	4	pull down, enzymatic study	Kumar S (1999), Kumar S (1999)	2
BRCA1	7	PSMC2	2	affinity chromatography technology	Ertych N (2016)	1
PSMC1	2	PSMD2	2	two hybrid, pull down, biochemical, two hybrid, biochemical, two hybrid, biochemical, affinity chromatography technology, affinity chromatography technology	Rual JF (2005), Gorbea C (2000), Havugimana PC (2012), Venkatesan K (2009), Kristensen AR (2012), Rolland T (2014), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	9
SEM1	0	PSMD13	1	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Wei SJ (2008), Krogan NJ (2004)	3
STUB1	4	PSMD1	2	affinity chromatography technology	Arndt V (2005)	1
UBA1	1	XPNPEP1	4	biochemical	Kristensen AR (2012)	1
UBQLN4	2	EEF1A1	0	two hybrid	Stelzl U (2005)	1
UBC	7	PHGDH	4	affinity chromatography technology	Matsumoto M (2005)	1
PSMC4	6	PSMC6	0	affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Lee SH (2012), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	4
NTRK1	1	PSMD14	3	affinity chromatography technology	Emdal KB (2015)	1
RNF185	1	UBQLN2	0	affinity chromatography technology	Iioka H (2007)	1
TRIM25	5	RAD23B	1	affinity chromatography technology	Choudhury NR (2017)	1
UBC	7	RAD23B	1	affinity chromatography technology, x-ray crystallography, affinity chromatography technology, pull down, pull down, pull down, affinity chromatography technology, pull down, pull down	Matsumoto M (2005), Ryu KS (2003), Chen L (2006), Nathan JA (2013), Nathan JA (2013), Nakayasu ES (2013), Nakayasu ES (2013), Kristariyanto YA (2015), Zhang X (2017)	9
USP5	2	UBA1	1	affinity chromatography technology	Song AX (2014)	1
HDAC6	0	PHGDH	4	affinity chromatography technology	Watson GW (2016)	1
HDAC6	0	MLH1	6	affinity chromatography technology, affinity chromatography technology	Zhang M (2014), Zhang M (2014)	2
UBXN7	3	UFM1	0	biochemical	Havugimana PC (2012)	1
HIF1A	1	PKM	1	affinity chromatography technology, pull down	Luo W (2011), Luo W (2011)	2
PRKN	1	PSMC4	6	affinity chromatography technology	Sarraf SA (2013)	1
PSMC1	2	PSMC2	2	pull down, pull down, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Gorbea C (2000), Hartmann-Petersen R (2001), Kaneko T (2009), Kaneko T (2009), Kim YC (2011), Kim YC (2011), Shim SM (2012), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	13
AHSA1	0	ZYX	2	biochemical	Wan C (2015)	1
UBC	7	BRCA1	7	pull down, enzymatic study	Sobhian B (2007), Zhao GY (2007)	2
SEM1	0	KIAA0368	0	affinity chromatography technology	Besche HC (2014)	1
BRCA1	7	PSMC6	0	affinity chromatography technology	Ertych N (2016)	1
PSMC5	4	PSMB7	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC6	0	PSMA3	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RAD23B	1	COMMD4	1	biochemical	Wan C (2015)	1
TRIM25	5	PHGDH	4	affinity chromatography technology	Choudhury NR (2017)	1
UBA2	0	RAD23B	1	biochemical	Kristensen AR (2012)	1
USP25	0	MYO6	3	affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Xu D (2017)	2
KIAA0368	0	PSMD13	1	biochemical	Kristensen AR (2012)	1
BLM	2	RAD23B	1	genetic interference	Vizeacoumar FJ (2013)	1
EIF4A3	1	BLM	2	affinity chromatography technology	Singh G (2012)	1
TRIM14	1	RPA1	0	bioid	Tan P (2017)	1
UBC	7	PSMC1	2	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
UBA2	0	TACC3	1	biochemical	Havugimana PC (2012)	1
EWSR1	2	RAD23A	1	two hybrid	Rual JF (2005)	1
BRCA1	7	SEC24B	3	affinity chromatography technology	Ertych N (2016)	1
PRKN	1	ATXN3	2	pull down, affinity chromatography technology, enzymatic study, enzymatic study, pull down, affinity chromatography technology, x-ray crystallography	Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Durcan TM (2011), Bai JJ (2013)	7
UBQLN1	1	PSMD4	1	pull down, pull down, affinity chromatography technology, x-ray crystallography, affinity chromatography technology, pull down, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology	Fallon L (2006), Heir R (2006), Ko HS (2004), Walters KJ (2002), Fatimababy AS (2010), Fatimababy AS (2010), Ko HS (2004), Ko HS (2004), Kurlawala Z (2017), Kurlawala Z (2017)	10
RAD23A	1	UBL7	0	two hybrid	Rual JF (2005)	1
RAD23B	1	UBA6	4	biochemical	Kristensen AR (2012)	1
PDIA3	0	VIM	0	biochemical	Havugimana PC (2012)	1
RAD23B	1	PSMD1	2	affinity chromatography technology, biochemical, biochemical	Chen L (2006), Havugimana PC (2012), Wan C (2015)	3
NPLOC4	4	UBQLN2	0	biochemical	Kristensen AR (2012)	1
PSMD13	1	PSMC4	6	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical	Ewing RM (2007), Ewing RM (2007), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5
PSMA2	1	PSMD1	2	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
BRCA1	7	HIF1A	1	affinity chromatography technology, affinity chromatography technology	Kang HJ (2006), Kang HJ (2006)	2
NTRK1	1	ALDH2	2	affinity chromatography technology	Emdal KB (2015)	1
SNRPF	0	PSMA3	1	two hybrid	Stelzl U (2005)	1
RAD23B	1	CORO1B	6	biochemical	Wan C (2015)	1
NANOG	0	SOX2	4	affinity chromatography technology	Oliviero G (2015)	1
RAD23A	1	PSMD14	3	affinity chromatography technology	Scanlon TC (2009)	1
UBXN7	3	PSMD2	2	affinity chromatography technology	Alexandru G (2008)	1
RAD23B	1	SPART	0	biochemical	Wan C (2015)	1
RBM8A	2	SNRPF	0	biochemical	Havugimana PC (2012)	1
PSMD2	2	UBQLN4	2	affinity chromatography technology, affinity chromatography technology	Li X (2008), Su V (2013)	2
PSMC1	2	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
PSMC6	0	PSMD4	1	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
EGLN3	0	RAD23B	1	affinity chromatography technology	Rodriguez J (2016)	1
ATXN3	2	UBC	7	pull down, pull down, affinity chromatography technology, affinity chromatography technology, enzymatic study, pull down, enzymatic study, affinity chromatography technology, affinity chromatography technology, pull down, pull down, enzymatic study, pull down, x-ray crystallography, affinity chromatography technology, pull down, enzymatic study, pull down, enzymatic study, pull down, enzymatic study, enzymatic study, x-ray crystallography, pull down, imaging technique, enzymatic study, pull down	Winborn BJ (2008), Mao Y (2005), Berke SJ (2005), Matsumoto M (2005), Bremm A (2010), Nicastro G (2010), Nicastro G (2010), Donaldson KM (2003), Chai Y (2004), Chai Y (2004), Nathan JA (2013), Seki T (2013), Yang H (2014), Yang H (2014), Blount JR (2014), Evers MM (2013), Weeks SD (2011), Donaldson KM (2003), Winborn BJ (2008), Faggiano S (2015), Wauer T (2015), Satoh T (2014), Satoh T (2014), Zhang X (2017), Toonen LJA (2017), Toonen LJA (2017), Kwasna D (2018)	27
RNF185	1	RAD23B	1	affinity chromatography technology	Iioka H (2007)	1
PRKN	1	VIM	0	affinity chromatography technology	Zanon A (2013)	1
KIAA0368	0	PSMD14	3	biochemical	Kristensen AR (2012)	1
MAPK6	1	PSMC6	0	affinity chromatography technology	Rodriguez J (2016)	1
OTUD1	3	RAD23B	1	affinity chromatography technology	Sowa ME (2009)	1
LCP1	0	RAD23B	1	biochemical	Havugimana PC (2012)	1
PSMA2	1	PSMB2	0	affinity chromatography technology, affinity chromatography technology, two hybrid, biochemical, biochemical, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Claverol S (2002), Bousquet-Dubouch MP (2009), Fricke B (2007), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	9
PRKN	1	UBC	7	enzymatic study, imaging technique, enzymatic study, fluorescent resonance energy transfe, pull down, pull down, pull down, pull down, x-ray crystallography, imaging technique, affinity chromatography technology, pull down, imaging technique, affinity chromatography technology, enzymatic study, enzymatic study, pull down, x-ray crystallography, enzymatic study	Kondapalli C (2012), Kane LA (2014), Kane LA (2014), Koyano F (2014), Zheng X (2013), Shiba-Fukushima K (2014), Shiba-Fukushima K (2014), Kumar A (2015), Kumar A (2015), Okatsu K (2015), Okatsu K (2015), Okatsu K (2015), Yamano K (2015), Fiesel FC (2015), Ordureau A (2015), Kazlauskaite A (2015), Kazlauskaite A (2015), Kumar A (2017), Kliza K (2017)	19
PDLIM5	0	PDE12	2	biochemical	Kristensen AR (2012)	1
8339	0	IGBP1	1	bioid	Lambert JP (2015)	1
PSMC2	2	PSMD4	1	biochemical, biochemical, biochemical, biochemical, pull down, biochemical, affinity chromatography technology	Kim YC (2011), Shim SM (2012), Havugimana PC (2012), Kristensen AR (2012), Berko D (2014), Wan C (2015), Sun S (2017)	7
EWSR1	2	PSMC6	0	bioid	Elzi DJ (2014)	1
UBC	7	UBXN7	3	pull down, affinity chromatography technology, pull down, affinity chromatography technology	Kelsall IR (2013), Alexandru G (2008), Besten Wd (2012), Besten Wd (2012)	4
UBQLN4	2	RAD23A	1	two hybrid, biochemical	Lim J (2006), Wan C (2015)	2
UCHL5	1	PSMD14	3	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Wang X (2007), Jacobson AD (2014), Huttlin EL (2015), Hein MY (2015), Huttlin EL (2017)	8
PSMC6	0	PSMC1	2	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	6
EWSR1	2	HMGB1	0	bioid	Elzi DJ (2014)	1
PLIN3	3	ADSL	5	biochemical	Kristensen AR (2012)	1
PSMC4	6	PSMD4	1	biochemical, biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	3
CALM1	0	PSMD2	2	pull down	Shen X (2005)	1
NTRK1	1	NPLOC4	4	affinity chromatography technology	Emdal KB (2015)	1
UBQLN2	0	PSMC2	2	pull down	Aguileta MA (2015)	1
COMMD4	1	TRIM25	5	biochemical	Wan C (2015)	1
TRIM25	5	ADRM1	4	affinity chromatography technology	Choudhury NR (2017)	1
TRIM25	5	PSMC5	4	affinity chromatography technology	Choudhury NR (2017)	1
EGLN3	0	PSMC4	6	affinity chromatography technology	Rodriguez J (2016)	1
NTRK1	1	PDE12	2	affinity chromatography technology	Emdal KB (2015)	1
PSMC4	6	PSMD2	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Ewing RM (2007), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	6
IGBP1	1	PPIL3	0	biochemical	Havugimana PC (2012)	1
TRIM25	5	RAD23A	1	affinity chromatography technology	Choudhury NR (2017)	1
PRKN	1	PSMC1	2	affinity chromatography technology, pull down	Sarraf SA (2013), Aguileta MA (2015)	2
RPA1	0	EWSR1	2	affinity chromatography technology	Marechal A (2014)	1
NTRK1	1	MYO6	3	affinity chromatography technology	Emdal KB (2015)	1
UBC	7	SPART	0	affinity chromatography technology	Matsumoto M (2005)	1
ADRM1	4	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
EWSR1	2	CALM1	0	pull down	Deloulme JC (1997)	1
UBE2N	1	TRIM25	5	two hybrid, pull down, x-ray crystallography, affinity chromatography technology	Markson G (2009), Sanchez JG (2016), Sanchez JG (2016), Choudhury NR (2017)	4
EEF1A1	0	GTF2I	1	biochemical	Havugimana PC (2012)	1
HIF1A	1	STUB1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, pull down	Luo W (2010), Luo W (2010), Luo W (2010), Luo W (2010)	4
ELAVL1	0	UFM1	0	affinity chromatography technology	Abdelmohsen K (2009)	1
NTRK1	1	PSMC2	2	affinity chromatography technology	Emdal KB (2015)	1
SEM1	0	PSMC2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Krogan NJ (2004), Besche HC (2014)	3
HMGCS1	0	NMD3	2	biochemical	Wan C (2015)	1
PSMD2	2	RPS21	0	biochemical	Kristensen AR (2012)	1
NTRK1	1	VIM	0	affinity chromatography technology	Emdal KB (2015)	1
EGLN3	0	KIAA0368	0	affinity chromatography technology	Rodriguez J (2016)	1
PSMD1	2	UBC	7	pull down, pull down	Jacobson AD (2014), Zhang X (2017)	2
EGLN3	0	SEC24B	3	affinity chromatography technology	Rodriguez J (2016)	1
PSMD1	2	UBA2	0	genetic interference	Horlbeck MA (2018)	1
RAD23A	1	PSMC4	6	affinity chromatography technology	Scanlon TC (2009)	1
UBE3A	4	PSMD4	1	enzymatic study, biochemical, enzymatic study, enzymatic study, pull down	Uchiki T (2009), Martinez-Noel G (2012), Kim HT (2012), Jacobson AD (2014), Tomaic V (2015)	5
ELAVL1	0	UBE4B	5	affinity chromatography technology	Abdelmohsen K (2009)	1
MAPK6	1	PSMD1	2	affinity chromatography technology	Rodriguez J (2016)	1
EGLN3	0	PSMB2	0	affinity chromatography technology	Rodriguez J (2016)	1
EGLN3	0	PSMC2	2	affinity chromatography technology	Rodriguez J (2016)	1
RAD23A	1	MYO6	3	biochemical	Wan C (2015)	1
PRKN	1	PSMA3	1	affinity chromatography technology	Sarraf SA (2013)	1
UBA6	4	EIF4A3	1	affinity chromatography technology	Hein MY (2015)	1
UBC	7	PSMC4	6	affinity chromatography technology, pull down	Matsumoto M (2005), Zhang X (2017)	2
PSMB7	1	PSMD2	2	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
TRIM25	5	UBE4B	5	affinity chromatography technology	Choudhury NR (2017)	1
RAD23B	1	RPS21	0	biochemical	Havugimana PC (2012)	1
PSMA2	1	VIM	0	biochemical	Havugimana PC (2012)	1
CBS	0	SEC24B	3	biochemical	Wan C (2015)	1
PSMD14	3	PSMD4	1	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Roelofs J (2009), Hendil KB (2009), Havugimana PC (2012), Wang X (2007), Jacobson AD (2014), Wan C (2015), Hein MY (2015), Sun S (2017), Sparks A (2014)	9
NTRK1	1	KIAA0368	0	affinity chromatography technology	Emdal KB (2015)	1
ATXN3	2	RAD23A	1	two hybrid, pull down, affinity chromatography technology, affinity chromatography technology, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, affinity chromatography technology	Wang G (2000), Wang G (2000), Wang G (2000), Scanlon TC (2009), Lim J (2006), Laco MN (2012), Laco MN (2012), Ferro A (2007), Chen L (2006)	9
PKM	1	PLIN3	3	biochemical	Kristensen AR (2012)	1
RAD23B	1	PUF60	16	two hybrid	Rolland T (2014)	1
NUBP2	0	STAT6	1	biochemical	Havugimana PC (2012)	1
NPLOC4	4	RAD23B	1	biochemical	Kristensen AR (2012)	1
EEF1A1	0	PSMD1	2	biochemical	Wan C (2015)	1
EGLN3	0	IGBP1	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMD4	1	PRKN	1	pull down, enzymatic study, x-ray crystallography, affinity chromatography technology, affinity chromatography technology, biochemical, enzymatic study, pull down, affinity chromatography technology, affinity chromatography technology	Safadi SS (2010), Uchiki T (2009), Sakata E (2003), Safadi SS (2011), Um JW (2010), Um JW (2010), Kim HT (2012), Beasley SA (2012), Sarraf SA (2013), Sarraf SA (2013)	10
TRIM25	5	ADSL	5	affinity chromatography technology	Choudhury NR (2017)	1
XPC	1	RAD23A	1	two hybrid, pull down, biochemical, affinity chromatography technology, pull down	Li L (1997), Sugasawa K (1997), Sugasawa K (1997), Krzeszinski JY (2013), Krzeszinski JY (2013)	5
UBE2V2	0	ZYX	2	biochemical	Havugimana PC (2012)	1
PSMC4	6	AHSA1	0	biochemical	Wan C (2015)	1
RPA1	0	XPC	1	pull down	Thoma BS (2005)	1
PSMC1	2	ADRM1	4	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Hein MY (2015), Huttlin EL (2017)	5
ADRM1	4	PSMD2	2	biochemical, affinity chromatography technology, pull down, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Hamazaki J (2006), Hamazaki J (2006), Hamazaki J (2006), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	7
POU5F1	0	XPC	1	affinity chromatography technology, affinity chromatography technology	Fong YW (2011), Oliviero G (2015)	2
TRIM25	5	PSMD2	2	affinity chromatography technology	Choudhury NR (2017)	1
PRKN	1	PSMD1	2	affinity chromatography technology	Sarraf SA (2013)	1
ZYX	2	UBE2N	1	affinity chromatography technology	Boldt K (2016)	1
TRIM25	5	SEC24B	3	affinity chromatography technology	Choudhury NR (2017)	1
RAD23A	1	GTF2H1	0	pull down	Zhu Q (2004)	1
ATXN3	2	RAD23B	1	two hybrid, pull down, affinity chromatography technology, two hybrid, affinity chromatography technology	Wang G (2000), Wang G (2000), Reina CP (2010), Lim J (2006), Chen L (2006)	5
RAD23A	1	VIM	0	affinity chromatography technology	Chen L (2006)	1
BRCA1	7	PSMD2	2	affinity chromatography technology	Ertych N (2016)	1
PSMC5	4	PSMD2	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology	Hamazaki J (2007), Lee SH (2012), Havugimana PC (2012), Wan C (2015), Huttlin EL (2017)	5
UBA1	1	NPLOC4	4	biochemical	Wan C (2015)	1
RAD23A	1	USP25	0	affinity chromatography technology, two hybrid	Scanlon TC (2009), Rolland T (2014)	2
CDKN3	2	RAD23A	1	affinity chromatography technology	Li X (2016)	1
POU5F1	0	PPIA	0	affinity chromatography technology	Hawkins PG (2010)	1
PSMC2	2	UBQLN1	1	biochemical, affinity chromatography technology	Havugimana PC (2012), Hochrainer K (2015)	2
RAD23A	1	UBE3A	4	pull down, enzymatic study, affinity chromatography technology, pull down, enzymatic study, enzymatic study, enzymatic study, enzymatic study, two hybrid	Kumar S (1999), Kumar S (1999), Scanlon TC (2009), Kuehnle S (2013), Kumar S (1997), Mortensen F (2015), Kim HT (2007), Cooper EM (2004), Cooper EM (2004)	9
NTRK1	1	G6PD	0	affinity chromatography technology	Emdal KB (2015)	1
ATXN3	2	UBE4B	5	pull down	Matsumoto M (2004)	1
PSMD4	1	PSMA3	1	biochemical	Wan C (2015)	1
TRIM25	5	UBC	7	enzymatic study	Sanchez JG (2016)	1
PSMA2	1	EEF1A1	0	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
RPA1	0	ELAVL1	0	affinity chromatography technology	Marechal A (2014)	1
RAD23A	1	USP5	2	affinity chromatography technology, biochemical	Scanlon TC (2009), Kristensen AR (2012)	2
PSMC4	6	PSMC5	4	two hybrid, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, two hybrid, two hybrid, affinity chromatography technology	Rual JF (2005), Ewing RM (2007), Hendil KB (2009), Kaneko T (2009), Kaneko T (2009), Lee SH (2012), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Albers M (2005), Albers M (2005), Huttlin EL (2017)	13
UBQLN2	0	PSMA2	1	pull down	Kleijnen MF (2003)	1
POU5F1	0	CETN2	0	affinity chromatography technology	Fong YW (2011)	1
IGBP1	1	PLIN3	3	biochemical	Havugimana PC (2012)	1
EGLN3	0	G6PD	0	affinity chromatography technology	Rodriguez J (2016)	1
NPLOC4	4	ADSL	5	biochemical	Kristensen AR (2012)	1
PSMA2	1	RAD23B	1	affinity chromatography technology	Bousquet-Dubouch MP (2009)	1
RBM8A	2	RAD23B	1	biochemical	Havugimana PC (2012)	1
SEM1	0	ADRM1	4	affinity chromatography technology	Besche HC (2014)	1
ELAVL1	0	CORO1C	2	affinity chromatography technology	Abdelmohsen K (2009)	1
PLIN3	3	CBS	0	biochemical	Kristensen AR (2012)	1
PSMA2	1	PSMC6	0	affinity chromatography technology, biochemical	Bousquet-Dubouch MP (2009), Wan C (2015)	2
TRIM25	5	EEF1A1	0	biochemical	Wan C (2015)	1
UBC	7	PSMA2	1	affinity chromatography technology	Matsumoto M (2005)	1
PSMA2	1	ADRM1	4	affinity chromatography technology, biochemical	Bousquet-Dubouch MP (2009), Wan C (2015)	2
PHGDH	4	RAD23B	1	biochemical	Wan C (2015)	1
DRAP1	2	RAD23B	1	biochemical	Kristensen AR (2012)	1
CALM1	0	GTF2I	1	pull down	Shen X (2005)	1
KIAA0368	0	PSMD1	2	affinity chromatography technology, biochemical	Gorbea C (2010), Wan C (2015)	2
PSMD13	1	RAD23B	1	biochemical	Havugimana PC (2012)	1
UCHL5	1	PSMC5	4	affinity chromatography technology, affinity chromatography technology, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	5
RAD23B	1	UBE4B	5	affinity chromatography technology	Huttlin EL (2017)	1
PSMB2	0	RAD23B	1	biochemical	Havugimana PC (2012)	1
RAD23A	1	UCHL5	1	affinity chromatography technology	Scanlon TC (2009)	1
PSMC2	2	GTF2H1	0	affinity chromatography technology	Yanagi S (2000)	1
UCHL5	1	PSMC2	2	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Yao T (2008), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	6
HMGCS1	0	UFM1	0	biochemical	Wan C (2015)	1
NTRK1	1	PSMD4	1	affinity chromatography technology	Emdal KB (2015)	1
RAD23B	1	CORO1C	2	biochemical	Wan C (2015)	1
ELAVL1	0	NPLOC4	4	affinity chromatography technology	Abdelmohsen K (2009)	1
RAD23B	1	ZYX	2	biochemical	Wan C (2015)	1
BRCA1	7	PDE12	2	affinity chromatography technology	Ertych N (2016)	1
PSMC1	2	PSMD4	1	biochemical, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Hein MY (2015), Poulsen EG (2012), Sparks A (2014)	6
RPA1	0	EEF1A1	0	affinity chromatography technology	Marechal A (2014)	1
8339	0	BRCA1	7	bioid	Lambert JP (2015)	1
NTRK1	1	ELAVL1	0	affinity chromatography technology	Emdal KB (2015)	1
PSMA2	1	PSMB7	1	affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Claverol S (2002), Bousquet-Dubouch MP (2009), Havugimana PC (2012), Froment C (2005), Froment C (2005), Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	9
UCHL5	1	PSMD2	2	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, affinity chromatography technology, affinity chromatography technology	Sowa ME (2009), Hamazaki J (2006), Yao T (2008), Havugimana PC (2012), Kristensen AR (2012), Huttlin EL (2015), Huttlin EL (2017)	7
AHSA1	0	EEF1A1	0	affinity chromatography technology	Wolfgeher D (2015)	1
UBE3A	4	SUMO3	0	two hybrid	Vinayagam A (2011)	1
PSMA3	1	PSMD1	2	pull down, biochemical, biochemical	Fedorova OA (2011), Havugimana PC (2012), Wan C (2015)	3
UBL7	0	UBQLN2	0	biochemical	Havugimana PC (2012)	1
HMGCS1	0	XPNPEP1	4	biochemical	Wan C (2015)	1
UBQLN4	2	UBQLN1	1	two hybrid, biochemical, affinity chromatography technology, affinity chromatography technology	Lim J (2006), Havugimana PC (2012), Lee DY (2013), Lee DY (2013)	4
PSMB2	0	VIM	0	biochemical	Havugimana PC (2012)	1
MAPK6	1	ADRM1	4	affinity chromatography technology	Rodriguez J (2016)	1
UCHL5	1	ADRM1	4	affinity chromatography technology, affinity chromatography technology, affinity chromatography technology, biochemical, pull down, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, pull down, affinity chromatography technology, pull down, affinity chromatography technology, pull down, biochemical, pull down, x-ray crystallography, two hybrid, affinity chromatography technology, x-ray crystallography, biochemical, biochemical, two hybrid, affinity chromatography technology, affinity chromatography technology, pull down, pull down	Sowa ME (2009), Hamazaki J (2006), Hamazaki J (2006), Hamazaki J (2006), Hamazaki J (2006), Yao T (2006), Yao T (2006), Yao T (2006), Yao T (2006), Chen X (2010), Qiu XB (2006), Qiu XB (2006), Yao T (2008), Yao T (2008), Kristensen AR (2012), Jiao L (2014), Jiao L (2014), Rolland T (2014), Huttlin EL (2015), Sahtoe DD (2015), Sahtoe DD (2015), Wan C (2015), Yu H (2011), Huttlin EL (2017), Lu X (2017), Lu X (2017), VanderLinden RT (2017)	27
RAD23A	1	PSMD13	1	affinity chromatography technology	Scanlon TC (2009)	1
PSMA2	1	PSMD13	1	affinity chromatography technology, biochemical, biochemical	Bousquet-Dubouch MP (2009), Havugimana PC (2012), Wan C (2015)	3
UBC	7	CALM1	0	affinity chromatography technology	Bish RA (2007)	1
8339	0	XPC	1	bioid	Lambert JP (2015)	1
CBS	0	PDLIM5	0	biochemical	Kristensen AR (2012)	1
EGLN3	0	PAX3	6	affinity chromatography technology	Rodriguez J (2016)	1
PSMC6	0	RAD23B	1	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RAD23B	1	NANS	2	biochemical	Havugimana PC (2012)	1
NTRK1	1	TACC3	1	affinity chromatography technology	Emdal KB (2015)	1
PUF60	16	ZYX	2	biochemical	Kristensen AR (2012)	1
PSMB7	1	RAD23A	1	biochemical	Wan C (2015)	1
RPS21	0	UCHL5	1	biochemical	Kristensen AR (2012)	1
NTRK1	1	UBA1	1	affinity chromatography technology	Emdal KB (2015)	1
ADRM1	4	UBQLN2	0	pull down, x-ray crystallography	Chen X (2016), Chen X (2016)	2
PSMC2	2	ADRM1	4	biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Kristensen AR (2012), Huttlin EL (2015), Wan C (2015), Huttlin EL (2017)	4
XPNPEP1	4	UCHL5	1	biochemical	Wan C (2015)	1
UCHL5	1	PSMA3	1	affinity chromatography technology, biochemical	Yao T (2008), Wan C (2015)	2
UBA6	4	UBC	7	pull down, enzymatic study, unspecified method, affinity chromatography technology	Gavin JM (2012), Gavin JM (2012), Zhao B (2012), Bish RA (2007)	4
SEM1	0	EEF1A1	0	affinity chromatography technology	Zhang Y (2014)	1
UCHL5	1	PSMB2	0	affinity chromatography technology, biochemical	Yao T (2008), Wan C (2015)	2
UBQLN2	0	RAD23B	1	biochemical	Wan C (2015)	1
EGLN3	0	AHSA1	0	affinity chromatography technology	Rodriguez J (2016)	1
SEM1	0	PSMC6	0	affinity chromatography technology, affinity chromatography technology	Baillat D (2005), Krogan NJ (2004)	2
PSMD4	1	STUB1	4	pull down, pull down, enzymatic study, enzymatic study, affinity chromatography technology, biochemical	Connell P (2001), Scaglione KM (2011), Uchiki T (2009), Kim HT (2012), Connell P (2001), Wan C (2015)	6
UBQLN4	2	RAD23B	1	biochemical	Wan C (2015)	1
UBE2V2	0	UBE2N	1	pull down, two hybrid, x-ray crystallography, two hybrid, two hybrid, two hybrid, pull down, pull down, x-ray crystallography, affinity chromatography technology, pull down, two hybrid, pull down, pull down, affinity chromatography technology, two hybrid, pull down, biochemical, x-ray crystallography, pull down, affinity chromatography technology, pull down, x-ray crystallography, biochemical, x-ray crystallography, affinity chromatography technology	Andersen PL (2005), Andersen PL (2005), Markin CJ (2010), Wooff J (2004), Wooff J (2004), Plans V (2006), Wu PY (2003), McKenna S (2003), McKenna S (2003), Zou W (2005), Takeuchi T (2005), Pastushok L (2005), Pastushok L (2005), Pastushok L (2005), Huen MS (2008), Huen MS (2008), Ye Y (2003), Havugimana PC (2012), Moraes TF (2001), Pastushok L (2007), Zou W (2005), McKenna S (2001), Hodge CD (2015), Wan C (2015), Branigan E (2015), Boldt K (2016)	26
UBXN7	3	BTBD9	2	affinity chromatography technology	Raman M (2015)	1
PSMA3	1	EEF1A1	0	affinity chromatography technology	Fedorova OA (2011)	1
EGLN3	0	PSMD4	1	affinity chromatography technology	Rodriguez J (2016)	1
PSMC1	2	RAD23B	1	biochemical	Wan C (2015)	1
NTRK1	1	PSMC6	0	affinity chromatography technology	Emdal KB (2015)	1
PSMD1	2	PSMC5	4	pull down, affinity chromatography technology, affinity chromatography technology, biochemical, biochemical, biochemical, affinity chromatography technology	Hartmann-Petersen R (2001), Park Y (2005), Lee SH (2012), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015), Huttlin EL (2017)	7
PSMC4	6	PSMD14	3	biochemical, biochemical, affinity chromatography technology, biochemical, affinity chromatography technology	Havugimana PC (2012), Kristensen AR (2012), Wang X (2007), Wan C (2015), Hein MY (2015)	5
NUBP2	0	RAD23B	1	biochemical, biochemical	Havugimana PC (2012), Kristensen AR (2012)	2
POU5F1	0	SOX2	4	pull down, affinity chromatography technology, affinity chromatography technology	Remenyi A (2003), Xu C (2013), Oliviero G (2015)	3
PRKN	1	ELAVL1	0	affinity chromatography technology	Zanon A (2013)	1
PSMC2	2	PSMB2	0	biochemical, biochemical	Havugimana PC (2012), Wan C (2015)	2
RAD23B	1	DDI2	2	affinity chromatography technology	Huttlin EL (2017)	1
PSMC2	2	PSMD1	2	affinity chromatography technology, biochemical, biochemical, biochemical, biochemical	Grune T (2011), Thompson D (2009), Havugimana PC (2012), Kristensen AR (2012), Wan C (2015)	5