PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000524423	[[36597123, 36597521], [36619651, 36619782]]	None
ENST00000311485	[[36613492, 36615745], [36619651, 36619786]]	[[36614134, 36615718]]
ENST00000529083	[[36615266, 36615745], [36616212, 36616305]]	[[36615266, 36615718]]
ENST00000527033	[[36615506, 36615745], [36616356, 36616551], [36619651, 36619786]]	[[36615506, 36615718]]
ENST00000532616	[[36615715, 36615745], [36616356, 36616745], [36619651, 36619786]]	[[36615715, 36615718]]
ENST00000534379	[[36616144, 36616551], [36619651, 36619783]]	None
ENST00000528428	[[36616290, 36616745], [36619651, 36619829]]	None
ENST00000530276	[[36616412, 36616817], [36619651, 36619783]]	None
NM_001243786	[[36613492, 36615745], [36616356, 36616745], [36619651, 36619829]]	[[36614134, 36615718]]
NM_001243785	[[36613492, 36615745], [36616356, 36616551], [36619651, 36619829]]	[[36614134, 36615718]]
NM_000536	[[36613492, 36615745], [36619651, 36619829]]	[[36614134, 36615718]]

Promoter

Chrom	Start	End	Description
chr11	36619771	36619793	CAGE_peak_1_at_RAG2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I036619	36619436	36619674	0.83	[{'connected_gene': 'RAG2', 'score': 5.9}, {'connected_gene': 'RAG1', 'score': 5.11}, {'connected_gene': 'PRR5L', 'score': 3.46}, {'connected_gene': 'GC11M036597', 'score': 0.39}, {'connected_gene': 'C11orf74', 'score': 0.31}, {'connected_gene': 'GC11M036644', 'score': 0.28}]
chr11	GH11I036571	36571933	36572368	0.46	[{'connected_gene': 'RAG2', 'score': 18.72}, {'connected_gene': 'RAG1', 'score': 18.69}, {'connected_gene': 'TRAF6', 'score': 10.69}, {'connected_gene': 'GC11P036555', 'score': 0.37}, {'connected_gene': 'C11orf74', 'score': 0.34}]
chr11	GH11I036596	36596326	36596713	0.46	[{'connected_gene': 'RAG2', 'score': 581.45}, {'connected_gene': 'RAG1', 'score': 39.96}, {'connected_gene': 'C11orf74', 'score': 0.77}]
chr11	GH11I036626	36626493	36628903	0.91	[{'connected_gene': 'RAG2', 'score': 12.61}, {'connected_gene': 'C11orf74', 'score': 11.77}, {'connected_gene': 'RAG1', 'score': 10.48}, {'connected_gene': 'TRAF6', 'score': 10.48}, {'connected_gene': 'GC11M036597', 'score': 0.34}, {'connected_gene': 'GC11M036644', 'score': 0.31}]
chr11	GH11I036629	36629646	36632273	0.43	[{'connected_gene': 'RAG2', 'score': 11.72}, {'connected_gene': 'C11orf74', 'score': 11.7}, {'connected_gene': 'RAG1', 'score': 10.3}, {'connected_gene': 'TRAF6', 'score': 10.3}, {'connected_gene': 'GC11M036644', 'score': 0.34}, {'connected_gene': 'GC11M036597', 'score': 0.31}]
chr11	GH11I036558	36558180	36560450	0.54	[{'connected_gene': 'RAG2', 'score': 12.21}, {'connected_gene': 'C11orf74', 'score': 12.08}, {'connected_gene': 'GC11P036555', 'score': 0.77}, {'connected_gene': 'RAG1', 'score': 0.25}]
chr11	GH11I036577	36577137	36578490	0.76	[{'connected_gene': 'RAG2', 'score': 11.77}, {'connected_gene': 'C11orf74', 'score': 0.37}, {'connected_gene': 'GC11P036555', 'score': 0.34}, {'connected_gene': 'RAG1', 'score': 0.2}]
chr11	GH11I036687	36687574	36693947	0.38	[{'connected_gene': 'RAG2', 'score': 11.01}, {'connected_gene': 'C11orf74', 'score': 10.03}, {'connected_gene': 'LOC100422241', 'score': 0.44}, {'connected_gene': 'GC11P036666', 'score': 0.34}]
chr11	GH11I036622	36622151	36623411	0.57	[{'connected_gene': 'RAG2', 'score': 12.64}, {'connected_gene': 'C11orf74', 'score': 11.78}, {'connected_gene': 'GC11M036597', 'score': 0.37}, {'connected_gene': 'GC11M036644', 'score': 0.29}]
chr11	GH11I036623	36623424	36625091	0.31	[{'connected_gene': 'RAG2', 'score': 12.61}, {'connected_gene': 'C11orf74', 'score': 11.77}, {'connected_gene': 'GC11M036597', 'score': 0.37}, {'connected_gene': 'GC11M036644', 'score': 0.29}]
chr11	GH11I036638	36638981	36639269	0.37	[{'connected_gene': 'RAG2', 'score': 11.27}, {'connected_gene': 'C11orf74', 'score': 10.94}, {'connected_gene': 'GC11M036644', 'score': 0.37}, {'connected_gene': 'GC11M036597', 'score': 0.29}]
chr11	GH11I036598	36598226	36598285	0.7	[{'connected_gene': 'RAG2', 'score': 550.77}, {'connected_gene': 'C11orf74', 'score': 0.77}, {'connected_gene': 'GC11M036597', 'score': 0.44}]
chr11	GH11I036609	36609079	36609138	0.7	[{'connected_gene': 'RAG2', 'score': 550.39}, {'connected_gene': 'GC11M036597', 'score': 0.77}, {'connected_gene': 'C11orf74', 'score': 0.39}, {'connected_gene': 'GC11M036644', 'score': 0.25}]
chr11	GH11I036541	36541000	36541401	0.95	[{'connected_gene': 'RAG1', 'score': 11.98}, {'connected_gene': 'TRAF6', 'score': 11.98}, {'connected_gene': 'C11orf74', 'score': 10.2}, {'connected_gene': 'RAG2', 'score': 10.19}, {'connected_gene': 'GC11M036546', 'score': 0.44}]
chr11	GH11I036569	36569122	36569460	0.42	[{'connected_gene': 'RAG1', 'score': 34.08}, {'connected_gene': 'RAG2', 'score': 30.22}, {'connected_gene': 'C11orf74', 'score': 12.0}, {'connected_gene': 'TRAF6', 'score': 10.42}, {'connected_gene': 'GC11P036555', 'score': 0.39}]
chr11	GH11I036683	36683969	36684121	0.43	[{'connected_gene': 'RAG1', 'score': 6.55}, {'connected_gene': 'RAG2', 'score': 6.12}, {'connected_gene': 'LOC100422241', 'score': 0.39}, {'connected_gene': 'GC11P036666', 'score': 0.37}]
chr11	GH11I036685	36685228	36685502	0.46	[{'connected_gene': 'RAG1', 'score': 12.1}, {'connected_gene': 'RAG2', 'score': 10.3}, {'connected_gene': 'LOC100422241', 'score': 0.39}, {'connected_gene': 'GC11P036666', 'score': 0.37}]
chr11	GH11I036567	36567963	36568022	0.7	[{'connected_gene': 'RAG1', 'score': 560.42}, {'connected_gene': 'C11orf74', 'score': 11.97}, {'connected_gene': 'RAG2', 'score': 11.95}, {'connected_gene': 'TRAF6', 'score': 10.42}, {'connected_gene': 'GC11P036555', 'score': 0.39}]
chr11	GH11I036593	36593847	36595773	2.26	[{'connected_gene': 'C11orf74', 'score': 550.77}, {'connected_gene': 'TRAF6', 'score': 13.32}, {'connected_gene': 'PRR5L', 'score': 6.05}, {'connected_gene': 'RAG2', 'score': 0.77}]
chr11	GH11I036564	36564414	36565000	1	[{'connected_gene': 'C11orf74', 'score': 12.07}, {'connected_gene': 'RAG2', 'score': 12.05}, {'connected_gene': 'PRR5L', 'score': 4.87}, {'connected_gene': 'GC11P036555', 'score': 0.44}, {'connected_gene': 'RAG1', 'score': 0.23}]
chr11	GH11I036709	36709353	36709385	0.22	[{'connected_gene': 'LOC105376631', 'score': 550.77}, {'connected_gene': 'RAG2', 'score': 10.38}, {'connected_gene': 'C11orf74', 'score': 10.37}, {'connected_gene': 'PRR5L', 'score': 5.84}, {'connected_gene': 'LOC100422241', 'score': 0.39}]
chr11	GH11I036601	36601001	36601600	0.97	[{'connected_gene': 'GC11M036597', 'score': 0.77}, {'connected_gene': 'RAG2', 'score': 0.77}, {'connected_gene': 'C11orf74', 'score': 0.44}]
chr11	GH11I036602	36602470	36603641	0.2	[{'connected_gene': 'GC11M036597', 'score': 0.77}, {'connected_gene': 'RAG2', 'score': 0.77}, {'connected_gene': 'C11orf74', 'score': 0.44}]
chr11	GH11I036603	36603941	36606179	0.49	[{'connected_gene': 'GC11M036597', 'score': 550.77}, {'connected_gene': 'RAG1', 'score': 10.06}, {'connected_gene': 'TRAF6', 'score': 10.06}, {'connected_gene': 'RAG2', 'score': 0.44}, {'connected_gene': 'C11orf74', 'score': 0.39}]
chr11	GH11I036312	36312229	36313400	0.64	[{'connected_gene': 'ENSG00000255060', 'score': 10.95}, {'connected_gene': 'COMMD9', 'score': 10.78}, {'connected_gene': 'RAG1', 'score': 10.04}, {'connected_gene': 'TRAF6', 'score': 10.04}, {'connected_gene': 'RAG2', 'score': 9.58}, {'connected_gene': 'C11orf74', 'score': 9.2}, {'connected_gene': 'ENSG00000254566', 'score': 0.39}, {'connected_gene': 'PRR5L', 'score': 0.37}]