PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000323534	[[152880028, 152886265]]	[[152880482, 152881034]]
NM_002886	[[152880000, 152888413]]	[[152880482, 152881034]]

Promoter

Chrom	Start	End	Description
chr3	152879985	152880038	CAGE_peak_1_at_RAP2B_5end
chr3	152880098	152880109	CAGE_peak_2_at_RAP2B_5end
chr3	152880163	152880181	CAGE_peak_3_at_RAP2B_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr3	GH03I153283	153283426	153288196	1.52	[{'connected_gene': 'RAP2B', 'score': 19.2}, {'connected_gene': 'ENSG00000244268', 'score': 11.94}, {'connected_gene': 'P2RY1', 'score': 1.59}, {'connected_gene': 'LOC105374166', 'score': 0.29}, {'connected_gene': 'LOC105374164', 'score': 0.18}, {'connected_gene': 'GC03P153002', 'score': 0.06}]
chr3	GH03I153288	153288981	153290000	1.37	[{'connected_gene': 'RAP2B', 'score': 21.88}, {'connected_gene': 'ENSG00000244268', 'score': 12.07}, {'connected_gene': 'P2RY1', 'score': 2.45}, {'connected_gene': 'LOC105374166', 'score': 0.29}, {'connected_gene': 'LOC105374164', 'score': 0.17}, {'connected_gene': 'GC03P153002', 'score': 0.06}]
chr3	GH03I153292	153292802	153293940	1.19	[{'connected_gene': 'RAP2B', 'score': 7.04}, {'connected_gene': 'P2RY1', 'score': 1.79}, {'connected_gene': 'LOC105374166', 'score': 0.31}, {'connected_gene': 'LOC105374164', 'score': 0.17}, {'connected_gene': 'GC03P153002', 'score': 0.06}]
chr3	GH03I153246	153246590	153248399	0.81	[{'connected_gene': 'RAP2B', 'score': 27.06}, {'connected_gene': 'ENSG00000244268', 'score': 11.49}, {'connected_gene': 'P2RY1', 'score': 2.35}, {'connected_gene': 'LOC105374164', 'score': 0.26}, {'connected_gene': 'LOC105374166', 'score': 0.19}, {'connected_gene': 'GC03P153002', 'score': 0.07}]
chr3	GH03I153251	153250596	153250800	0.42	[{'connected_gene': 'RAP2B', 'score': 24.19}, {'connected_gene': 'ENSG00000244268', 'score': 11.41}, {'connected_gene': 'P2RY1', 'score': 2.13}, {'connected_gene': 'LOC105374164', 'score': 0.25}, {'connected_gene': 'LOC105374166', 'score': 0.2}, {'connected_gene': 'GC03P153002', 'score': 0.07}]
chr3	GH03I153245	153245111	153245293	0.37	[{'connected_gene': 'RAP2B', 'score': 20.66}, {'connected_gene': 'ENSG00000244268', 'score': 11.04}, {'connected_gene': 'P2RY1', 'score': 1.98}, {'connected_gene': 'LOC105374164', 'score': 0.26}, {'connected_gene': 'LOC105374166', 'score': 0.18}, {'connected_gene': 'GC03P153002', 'score': 0.07}]
chr3	GH03I153158	153158940	153167942	2.65	[{'connected_gene': 'RAP2B', 'score': 559.97}, {'connected_gene': 'ENSG00000244268', 'score': 550.77}, {'connected_gene': 'P2RY1', 'score': 1.15}, {'connected_gene': 'GC03P153191', 'score': 0.31}, {'connected_gene': 'GC03P153002', 'score': 0.1}]
chr3	GH03I152865	152865703	152866081	0.56	[{'connected_gene': 'RAP2B', 'score': 6.8}, {'connected_gene': 'P2RY1', 'score': 2.67}, {'connected_gene': 'GC03P152840', 'score': 0.31}, {'connected_gene': 'GC03P153002', 'score': 0.12}]
chr3	GH03I153137	153137330	153142175	1.71	[{'connected_gene': 'RAP2B', 'score': 17.6}, {'connected_gene': 'ENSG00000244268', 'score': 11.68}, {'connected_gene': 'LOC105374163', 'score': 4.92}, {'connected_gene': 'LOC100418712', 'score': 0.39}, {'connected_gene': 'GC03P153002', 'score': 0.12}]
chr3	GH03I152857	152857123	152857514	0.87	[{'connected_gene': 'P2RY1', 'score': 14.52}, {'connected_gene': 'RAP2B', 'score': 5.49}, {'connected_gene': 'GC03P152840', 'score': 0.37}, {'connected_gene': 'GC03P153002', 'score': 0.11}]
chr3	GH03I153320	153320048	153320400	0.42	[{'connected_gene': 'LOC105374166', 'score': 550.77}, {'connected_gene': 'RAP2B', 'score': 1.73}, {'connected_gene': 'LOC105374164', 'score': 0.13}, {'connected_gene': 'GC03P153002', 'score': 0.06}]
chr3	GH03I153130	153130202	153131599	1.49	[{'connected_gene': 'LOC100418712', 'score': 550.77}, {'connected_gene': 'RAP2B', 'score': 6.72}, {'connected_gene': 'ENSG00000241220', 'score': 4.21}, {'connected_gene': 'ENSG00000244268', 'score': 0.29}, {'connected_gene': 'GC03P153002', 'score': 0.13}]
chr3	GH03I153276	153276845	153277835	0.63	[{'connected_gene': 'ENSG00000244268', 'score': 11.35}, {'connected_gene': 'RAP2B', 'score': 11.35}, {'connected_gene': 'LOC105374166', 'score': 0.26}, {'connected_gene': 'LOC105374164', 'score': 0.19}, {'connected_gene': 'GC03P153002', 'score': 0.06}]
chr3	GH03I153290	153290401	153290600	0.49	[{'connected_gene': 'ENSG00000244268', 'score': 12.07}, {'connected_gene': 'RAP2B', 'score': 12.07}, {'connected_gene': 'LOC105374166', 'score': 0.31}, {'connected_gene': 'LOC105374164', 'score': 0.17}, {'connected_gene': 'GC03P153002', 'score': 0.06}]
chr3	GH03I153250	153250001	153250200	0.31	[{'connected_gene': 'ENSG00000244268', 'score': 11.41}, {'connected_gene': 'RAP2B', 'score': 11.41}, {'connected_gene': 'LOC105374164', 'score': 0.25}, {'connected_gene': 'LOC105374166', 'score': 0.19}, {'connected_gene': 'GC03P153002', 'score': 0.07}]
chr3	GH03I153231	153231612	153233696	0.95	[{'connected_gene': 'ENSG00000244268', 'score': 12.01}, {'connected_gene': 'RAP2B', 'score': 12.01}, {'connected_gene': 'LOC105374164', 'score': 0.31}, {'connected_gene': 'LOC105374166', 'score': 0.17}, {'connected_gene': 'GC03P153002', 'score': 0.07}]
chr3	GH03I153248	153248801	153249000	0.38	[{'connected_gene': 'ENSG00000244268', 'score': 11.41}, {'connected_gene': 'RAP2B', 'score': 11.41}, {'connected_gene': 'LOC105374164', 'score': 0.25}, {'connected_gene': 'LOC105374166', 'score': 0.19}, {'connected_gene': 'GC03P153002', 'score': 0.07}]
chr3	GH03I153219	153219200	153219600	0.2	[{'connected_gene': 'ENSG00000244268', 'score': 13.29}, {'connected_gene': 'RAP2B', 'score': 13.29}, {'connected_gene': 'LOC105374164', 'score': 0.37}, {'connected_gene': 'LOC105374166', 'score': 0.15}, {'connected_gene': 'GC03P153002', 'score': 0.08}]
chr3	GH03I153220	153220048	153224527	1.12	[{'connected_gene': 'ENSG00000244268', 'score': 13.28}, {'connected_gene': 'RAP2B', 'score': 13.28}, {'connected_gene': 'LOC105374164', 'score': 0.37}, {'connected_gene': 'LOC105374166', 'score': 0.15}, {'connected_gene': 'GC03P153002', 'score': 0.08}]
chr3	GH03I153209	153209351	153211203	0.82	[{'connected_gene': 'ENSG00000244268', 'score': 12.43}, {'connected_gene': 'RAP2B', 'score': 12.43}, {'connected_gene': 'LOC105374164', 'score': 0.44}, {'connected_gene': 'LOC105374166', 'score': 0.14}, {'connected_gene': 'GC03P153002', 'score': 0.08}]
chr3	GH03I153028	153028430	153030121	0.74	[{'connected_gene': 'ENSG00000244268', 'score': 11.12}, {'connected_gene': 'RAP2B', 'score': 11.12}, {'connected_gene': 'GC03P153002', 'score': 0.31}, {'connected_gene': 'HMGN2P13', 'score': 0.28}]
chr3	GH03I153182	153182272	153183381	0.49	[{'connected_gene': 'GC03P153191', 'score': 0.44}, {'connected_gene': 'RAP2B', 'score': 0.34}, {'connected_gene': 'GC03P153002', 'score': 0.09}]