PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000537871	[[63304280, 63304349], [63312092, 63312361], [63313620, 63313934]]	None
ENST00000439013	[[63304287, 63304349], [63306987, 63307096], [63312092, 63312859]]	[[63304340, 63304349], [63306987, 63307096], [63312092, 63312445]]
ENST00000255688	[[63304292, 63304349], [63306987, 63307096], [63312092, 63312361], [63313620, 63313934]]	[[63304340, 63304349], [63306987, 63307096], [63312092, 63312361], [63313620, 63313728]]
ENST00000544107	[[63304316, 63304349], [63312071, 63312361], [63313620, 63313797]]	None
ENST00000354445	[[63305867, 63305886], [63306997, 63307096], [63312092, 63312361], [63313620, 63313929]]	[[63305867, 63305886], [63306997, 63307096], [63312092, 63312361], [63313620, 63313728]]
NM_004585	[[63304272, 63304349], [63306987, 63307096], [63312092, 63312361], [63313620, 63313930]]	[[63304340, 63304349], [63306987, 63307096], [63312092, 63312361], [63313620, 63313728]]

Promoter

Chrom	Start	End	Description
chr11	63304273	63304292	CAGE_peak_2_at_RARRES3_5end
chr11	63304309	63304325	CAGE_peak_1_at_RARRES3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I063504	63504801	63508432	1.74	[{'connected_gene': 'LGALS12', 'score': 563.23}, {'connected_gene': 'RARRES3', 'score': 11.95}, {'connected_gene': 'ENSG00000203520', 'score': 11.66}, {'connected_gene': 'PLA2G16', 'score': 11.66}, {'connected_gene': 'ENSG00000256789', 'score': 10.79}, {'connected_gene': 'ATL3', 'score': 10.16}, {'connected_gene': 'TMSB4XP5', 'score': 0.39}]
chr11	GH11I063505	63504401	63504788	0.78	[{'connected_gene': 'LGALS12', 'score': 550.77}, {'connected_gene': 'RARRES3', 'score': 11.95}, {'connected_gene': 'PLA2G16', 'score': 11.66}, {'connected_gene': 'ENSG00000203520', 'score': 11.66}, {'connected_gene': 'ENSG00000256789', 'score': 10.79}, {'connected_gene': 'ATL3', 'score': 10.16}, {'connected_gene': 'HRASLS5', 'score': 0.39}]
chr11	GH11I063530	63530802	63539234	2.7	[{'connected_gene': 'RARRES3', 'score': 555.19}, {'connected_gene': 'CSKMT', 'score': 15.23}, {'connected_gene': 'GANAB', 'score': 12.96}, {'connected_gene': 'SNHG1', 'score': 12.72}, {'connected_gene': 'HRASLS2', 'score': 11.97}, {'connected_gene': 'ENSG00000203520', 'score': 11.27}, {'connected_gene': 'PLA2G16', 'score': 11.27}, {'connected_gene': 'TUT1', 'score': 11.13}, {'connected_gene': 'ENSG00000256789', 'score': 10.94}, {'connected_gene': 'NXF1', 'score': 10.38}, {'connected_gene': 'TAF6L', 'score': 10.24}, {'connected_gene': 'OTUB1', 'score': 5.95}, {'connected_gene': 'MARK2', 'score': 1.39}, {'connected_gene': 'PIR35897', 'score': 0.39}]
chr11	GH11I063494	63494821	63496061	0.69	[{'connected_gene': 'RARRES3', 'score': 11.92}, {'connected_gene': 'PLA2G16', 'score': 11.65}, {'connected_gene': 'ENSG00000203520', 'score': 11.65}, {'connected_gene': 'ENSG00000256789', 'score': 11.29}, {'connected_gene': 'ATL3', 'score': 10.15}, {'connected_gene': 'LGALS12', 'score': 6.51}, {'connected_gene': 'HRASLS5', 'score': 0.77}]
chr11	GH11I063502	63502053	63504338	1.02	[{'connected_gene': 'RARRES3', 'score': 11.95}, {'connected_gene': 'ENSG00000203520', 'score': 11.66}, {'connected_gene': 'PLA2G16', 'score': 11.66}, {'connected_gene': 'ENSG00000256789', 'score': 10.79}, {'connected_gene': 'ATL3', 'score': 10.16}, {'connected_gene': 'MARK2', 'score': 4.3}, {'connected_gene': 'RTN3', 'score': 3.23}, {'connected_gene': 'LGALS12', 'score': 2.03}, {'connected_gene': 'HRASLS5', 'score': 0.39}]
chr11	GH11I063563	63563091	63568920	2.22	[{'connected_gene': 'HRASLS2', 'score': 555.65}, {'connected_gene': 'RARRES3', 'score': 18.08}, {'connected_gene': 'TTC9C', 'score': 13.08}, {'connected_gene': 'ENSG00000203520', 'score': 11.08}, {'connected_gene': 'PLA2G16', 'score': 11.08}, {'connected_gene': 'ENSG00000256789', 'score': 10.74}, {'connected_gene': 'OTUB1', 'score': 7.81}, {'connected_gene': 'LOC105369335', 'score': 0.44}, {'connected_gene': 'GC11M063550', 'score': 0.14}]
chr11	GH11I063579	63579690	63581008	0.43	[{'connected_gene': 'PLA2G16', 'score': 11.51}, {'connected_gene': 'ENSG00000203520', 'score': 11.51}, {'connected_gene': 'RARRES3', 'score': 11.26}, {'connected_gene': 'ENSG00000256789', 'score': 10.57}, {'connected_gene': 'LOC105369335', 'score': 0.44}, {'connected_gene': 'GC11M063550', 'score': 0.15}]
chr11	GH11I063577	63577261	63578702	0.38	[{'connected_gene': 'PLA2G16', 'score': 15.71}, {'connected_gene': 'ENSG00000203520', 'score': 11.51}, {'connected_gene': 'RARRES3', 'score': 11.26}, {'connected_gene': 'ENSG00000256789', 'score': 10.57}, {'connected_gene': 'LOC105369335', 'score': 0.77}, {'connected_gene': 'GC11M063550', 'score': 0.15}]
chr11	GH11I063528	63528878	63530449	0.58	[{'connected_gene': 'PLA2G16', 'score': 11.4}, {'connected_gene': 'ENSG00000203520', 'score': 11.4}, {'connected_gene': 'ENSG00000256789', 'score': 10.52}, {'connected_gene': 'PIR35897', 'score': 0.44}, {'connected_gene': 'RARRES3', 'score': 0.44}]
chr11	GH11I063573	63573675	63575659	1.36	[{'connected_gene': 'LOC105369335', 'score': 550.77}, {'connected_gene': 'PLA2G16', 'score': 11.49}, {'connected_gene': 'ENSG00000203520', 'score': 11.49}, {'connected_gene': 'RARRES3', 'score': 11.28}, {'connected_gene': 'ENSG00000256789', 'score': 10.55}, {'connected_gene': 'HRASLS2', 'score': 0.44}, {'connected_gene': 'GC11M063550', 'score': 0.14}]
chr11	GH11I063999	63998949	64000024	1.39	[{'connected_gene': 'LOC101927673', 'score': 550.77}, {'connected_gene': 'SF1', 'score': 15.23}, {'connected_gene': 'ENSG00000257086', 'score': 11.6}, {'connected_gene': 'MEN1', 'score': 10.84}, {'connected_gene': 'OTUB1', 'score': 10.32}, {'connected_gene': 'RARRES3', 'score': 4.64}, {'connected_gene': 'NAA40', 'score': 4.6}, {'connected_gene': 'FKBP2', 'score': 4.29}, {'connected_gene': 'GC11P063911', 'score': 0.16}, {'connected_gene': 'MACROD1', 'score': 0.1}]
chr11	GH11I063527	63527342	63528060	0.31	[{'connected_gene': 'PIR35897', 'score': 0.77}, {'connected_gene': 'RARRES3', 'score': 0.44}]
chr11	GH11I063549	63549414	63550086	0.2	[{'connected_gene': 'PIR37090', 'score': 550.77}, {'connected_gene': 'GC11P063556', 'score': 550.77}, {'connected_gene': 'ENSG00000256789', 'score': 10.48}, {'connected_gene': 'RARRES3', 'score': 0.39}]
chr11	GH11I063551	63551136	63555068	1.25	[{'connected_gene': 'PIR37090', 'score': 550.77}, {'connected_gene': 'GC11P063556', 'score': 550.77}, {'connected_gene': 'ENSG00000203520', 'score': 11.43}, {'connected_gene': 'PLA2G16', 'score': 11.43}, {'connected_gene': 'ENSG00000256789', 'score': 10.68}, {'connected_gene': 'OTUB1', 'score': 6.67}, {'connected_gene': 'HRASLS2', 'score': 5.81}, {'connected_gene': 'RARRES3', 'score': 4.46}, {'connected_gene': 'GC11M063550', 'score': 0.13}]