PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000265080	[[80256490, 80256845], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80388619, 80388780], [80390114, 80390181], [80390674, 80390811], [80404814, 80404897], [80408428, 80408677], [80409356, 80409739], [80419460, 80419586], [80422892, 80422982], [80475993, 80476100], [80497148, 80497261], [80502663, 80502724], [80503064, 80503168], [80504172, 80504257], [80508184, 80508382], [80511694, 80511774], [80513174, 80513292], [80515528, 80515597], [80521496, 80525975]]	[[80256557, 80256845], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80388619, 80388780], [80390114, 80390181], [80390674, 80390811], [80404814, 80404897], [80408428, 80408677], [80409356, 80409739], [80419460, 80419586], [80422892, 80422982], [80475993, 80476100], [80497148, 80497261], [80502663, 80502724], [80503064, 80503168], [80504172, 80504257], [80508184, 80508382], [80511694, 80511774], [80513174, 80513292], [80515528, 80515597], [80521496, 80521589]]
ENST00000503795	[[80256507, 80256845], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80388619, 80388780], [80390114, 80390181], [80390674, 80390811], [80404814, 80404897], [80408428, 80408677], [80409356, 80409739], [80419460, 80419586], [80422892, 80422982], [80475993, 80476100], [80497148, 80497261], [80502663, 80502724], [80503064, 80503168], [80504172, 80504257], [80508184, 80508382], [80511694, 80511774], [80512782, 80512813], [80513174, 80513292], [80515528, 80515597], [80521496, 80521631]]	[[80256557, 80256845], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80388619, 80388780], [80390114, 80390181], [80390674, 80390811], [80404814, 80404897], [80408428, 80408677], [80409356, 80409739], [80419460, 80419586], [80422892, 80422982], [80475993, 80476100], [80497148, 80497261], [80502663, 80502724], [80503064, 80503168], [80504172, 80504257], [80508184, 80508382], [80511694, 80511774], [80512782, 80512804]]
ENST00000514946	[[80315225, 80315404], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369041]]	None
ENST00000502677	[[80365842, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80382946, 80384383]]	None
ENST00000512186	[[80388734, 80388780], [80390114, 80390181], [80390674, 80390811], [80391905, 80392325]]	None
NM_006909	[[80256507, 80256845], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80388619, 80388780], [80390114, 80390181], [80390674, 80390811], [80404814, 80404897], [80408428, 80408677], [80409356, 80409739], [80419460, 80419586], [80422892, 80422982], [80475993, 80476100], [80497148, 80497261], [80502663, 80502724], [80503064, 80503168], [80504172, 80504257], [80508184, 80508382], [80511694, 80511774], [80513174, 80513292], [80515528, 80515597], [80521496, 80525981]]	[[80256557, 80256845], [80338695, 80338802], [80363850, 80363998], [80366310, 80366400], [80369017, 80369271], [80375939, 80376019], [80376414, 80376608], [80381620, 80381730], [80382653, 80382772], [80388619, 80388780], [80390114, 80390181], [80390674, 80390811], [80404814, 80404897], [80408428, 80408677], [80409356, 80409739], [80419460, 80419586], [80422892, 80422982], [80475993, 80476100], [80497148, 80497261], [80502663, 80502724], [80503064, 80503168], [80504172, 80504257], [80508184, 80508382], [80511694, 80511774], [80513174, 80513292], [80515528, 80515597], [80521496, 80521589]]

Promoter

Chrom	Start	End	Description
chr5	80255958	80255991	CAGE_peak_3_at_RASGRF2_5end
chr5	80256152	80256157	CAGE_peak_4_at_RASGRF2_5end
chr5	80256173	80256188	CAGE_peak_1_at_RASGRF2_5end
chr5	80256453	80256506	CAGE_peak_2_at_RASGRF2_5end
chr5	80256513	80256530	CAGE_peak_5_at_RASGRF2_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr5	GH05I080238	80238217	80240465	1.06	[{'connected_gene': 'RASGRF2', 'score': 6.99}, {'connected_gene': 'SERINC5', 'score': 5.24}, {'connected_gene': 'GC05P080147', 'score': 0.16}]
chr5	GH05I080233	80233773	80235677	0.38	[{'connected_gene': 'RASGRF2', 'score': 5.44}, {'connected_gene': 'SERINC5', 'score': 5.28}, {'connected_gene': 'GC05P080147', 'score': 0.17}]
chr5	GH05I080989	80989857	80991605	0.49	[{'connected_gene': 'RASGRF2', 'score': 6.67}, {'connected_gene': 'DHFR', 'score': 5.28}, {'connected_gene': 'ENSG00000251001', 'score': 0.44}, {'connected_gene': 'RASGRF2-AS1', 'score': 0.31}]
chr5	GH05I081005	81005808	81008022	0.96	[{'connected_gene': 'RASGRF2', 'score': 13.55}, {'connected_gene': 'RASGRF2-AS1', 'score': 11.61}, {'connected_gene': 'MSH3', 'score': 5.59}, {'connected_gene': 'ENSG00000251001', 'score': 0.44}, {'connected_gene': 'ENSG00000249772', 'score': 0.14}]
chr5	GH05I080959	80959121	80962239	1.92	[{'connected_gene': 'RASGRF2', 'score': 559.29}, {'connected_gene': 'RASGRF2-AS1', 'score': 550.77}, {'connected_gene': 'CKMT2-AS1', 'score': 11.9}, {'connected_gene': 'ENSG00000248794', 'score': 9.79}, {'connected_gene': 'MTX3', 'score': 9.72}, {'connected_gene': 'DHFR', 'score': 4.94}]
chr5	GH05I081020	81020396	81021111	0.64	[{'connected_gene': 'RASGRF2', 'score': 14.57}, {'connected_gene': 'RASGRF2-AS1', 'score': 11.46}, {'connected_gene': 'ENSG00000251001', 'score': 0.34}, {'connected_gene': 'ENSG00000249772', 'score': 0.16}]
chr5	GH05I080962	80962934	80965813	0.91	[{'connected_gene': 'RASGRF2', 'score': 9.24}, {'connected_gene': 'RASGRF2-AS1', 'score': 0.77}, {'connected_gene': 'ENSG00000251001', 'score': 0.29}]
chr5	GH05I080941	80941302	80942607	0.31	[{'connected_gene': 'DHFR', 'score': 5.25}, {'connected_gene': 'RASGRF2', 'score': 0.37}, {'connected_gene': 'RPS26P27', 'score': 0.17}]
chr5	GH05I080860	80860436	80862170	0.2	[{'connected_gene': 'DHFR', 'score': 22.66}, {'connected_gene': 'MSH3', 'score': 14.62}, {'connected_gene': 'RPS26P27', 'score': 0.44}, {'connected_gene': 'RASGRF2', 'score': 0.15}]
chr5	GH05I081212	81212252	81212989	0.6	[{'connected_gene': 'CKMT2', 'score': 11.8}, {'connected_gene': 'ENSG00000249772', 'score': 10.06}, {'connected_gene': 'ENSG00000248794', 'score': 9.84}, {'connected_gene': 'ATG10', 'score': 4.79}, {'connected_gene': 'GC05P081229', 'score': 0.39}, {'connected_gene': 'CKMT2-AS1', 'score': 0.17}, {'connected_gene': 'RASGRF2', 'score': 0.07}]
chr5	GH05I081004	81004001	81004600	0.2	[{'connected_gene': 'RASGRF2-AS1', 'score': 11.62}, {'connected_gene': 'RASGRF2', 'score': 11.62}, {'connected_gene': 'ENSG00000251001', 'score': 0.44}, {'connected_gene': 'ENSG00000249772', 'score': 0.14}]
chr5	GH05I080966	80966722	80969045	1.27	[{'connected_gene': 'RASGRF2-AS1', 'score': 6.59}, {'connected_gene': 'RASGRF2', 'score': 6.15}, {'connected_gene': 'ENSG00000251001', 'score': 0.29}]
chr5	GH05I080955	80955961	80958962	0.93	[{'connected_gene': 'ENSG00000249772', 'score': 10.05}, {'connected_gene': 'RASGRF2', 'score': 9.04}, {'connected_gene': 'RASGRF2-AS1', 'score': 0.77}, {'connected_gene': 'RPS26P27', 'score': 0.15}]
chr5	GH05I081076	81076812	81076929	0.24	[{'connected_gene': 'ENSG00000249772', 'score': 0.28}, {'connected_gene': 'ENSG00000251001', 'score': 0.18}, {'connected_gene': 'RASGRF2', 'score': 0.13}]
chr5	GH05I081108	81108542	81108671	0.6	[{'connected_gene': 'ENSG00000249772', 'score': 0.44}, {'connected_gene': 'ENSG00000251001', 'score': 0.14}, {'connected_gene': 'RASGRF2', 'score': 0.11}]
chr5	GH05I081043	81043802	81043951	0.56	[{'connected_gene': 'ENSG00000251001', 'score': 0.25}, {'connected_gene': 'ENSG00000249772', 'score': 0.19}, {'connected_gene': 'RASGRF2', 'score': 0.18}]
chr5	GH05I081126	81126001	81126200	0.64	[{'connected_gene': 'ENSG00000249772', 'score': 0.39}, {'connected_gene': 'GC05P081229', 'score': 0.15}, {'connected_gene': 'RASGRF2', 'score': 0.1}]
chr5	GH05I081141	81140963	81141741	0.31	[{'connected_gene': 'ENSG00000249772', 'score': 11.63}, {'connected_gene': 'GC05P081229', 'score': 0.18}, {'connected_gene': 'RASGRF2', 'score': 0.09}]
chr5	GH05I081140	81140542	81140691	0.38	[{'connected_gene': 'ENSG00000249772', 'score': 11.63}, {'connected_gene': 'GC05P081229', 'score': 0.17}, {'connected_gene': 'RASGRF2', 'score': 0.1}]
chr5	GH05I081107	81107194	81107211	0.22	[{'connected_gene': 'ENSG00000249772', 'score': 0.44}, {'connected_gene': 'ENSG00000251001', 'score': 0.14}, {'connected_gene': 'RASGRF2', 'score': 0.11}]
chr5	GH05I081194	81194924	81195599	1.23	[{'connected_gene': 'GC05P081229', 'score': 0.29}, {'connected_gene': 'ENSG00000249772', 'score': 0.18}, {'connected_gene': 'RASGRF2', 'score': 0.07}]
chr5	GH05I081164	81164274	81165596	0.67	[{'connected_gene': 'ENSG00000249772', 'score': 11.03}, {'connected_gene': 'GC05P081229', 'score': 0.21}, {'connected_gene': 'RASGRF2', 'score': 0.08}]
chr5	GH05I080885	80885145	80886173	0.72	[{'connected_gene': 'ENSG00000249772', 'score': 9.78}, {'connected_gene': 'DHFR', 'score': 8.92}, {'connected_gene': 'RPS26P27', 'score': 0.31}, {'connected_gene': 'RASGRF2', 'score': 0.18}]
chr5	GH05I081184	81184073	81185181	0.49	[{'connected_gene': 'ENSG00000249772', 'score': 11.08}, {'connected_gene': 'CKMT2', 'score': 10.88}, {'connected_gene': 'GC05P081229', 'score': 0.26}, {'connected_gene': 'RASGRF2', 'score': 0.07}]
chr5	GH05I081165	81165622	81165771	0.69	[{'connected_gene': 'ENSG00000249772', 'score': 11.03}, {'connected_gene': 'CKMT2', 'score': 10.05}, {'connected_gene': 'ENSG00000248794', 'score': 5.86}, {'connected_gene': 'GC05P081229', 'score': 0.21}, {'connected_gene': 'RASGRF2', 'score': 0.08}]
chr5	GH05I080998	80998601	80998800	0.31	[{'connected_gene': 'ENSG00000251001', 'score': 550.77}, {'connected_gene': 'RASGRF2-AS1', 'score': 11.73}, {'connected_gene': 'RASGRF2', 'score': 11.73}, {'connected_gene': 'ENSG00000249772', 'score': 0.13}]