PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000227507	[[69455854, 69456279], [69457798, 69458014], [69458599, 69458759], [69462761, 69462910], [69465885, 69469242]]	[[69456081, 69456279], [69457798, 69458014], [69458599, 69458759], [69462761, 69462910], [69465885, 69466050]]
ENST00000539241	[[69455932, 69456279], [69457798, 69458014], [69458599, 69458956]]	None
ENST00000536559	[[69455973, 69456279], [69462761, 69463008]]	[[69456081, 69456279], [69462761, 69462767]]
ENST00000535993	[[69455998, 69456279], [69457798, 69458085]]	None
ENST00000545484	[[69458479, 69458759], [69462761, 69462911]]	None
ENST00000542367	[[69462724, 69462910], [69465885, 69466175]]	None
NM_053056	[[69455872, 69456279], [69457798, 69458014], [69458599, 69458759], [69462761, 69462910], [69465885, 69469242]]	[[69456081, 69456279], [69457798, 69458014], [69458599, 69458759], [69462761, 69462910], [69465885, 69466050]]

Promoter

Chrom	Start	End	Description
chr11	69455707	69455723	CAGE_peak_11_at_CCND1_5end
chr11	69455914	69455932	CAGE_peak_1_at_CCND1_5end
chr11	69458592	69458678	CAGE_peak_4_at_CCND1_5end
chr11	69462821	69462870	CAGE_peak_6_at_CCND1_5end
chr11	69466187	69466212	CAGE_peak_9_at_CCND1_5end
chr11	69466948	69466985	CAGE_peak_10_at_CCND1_5end
chr11	69467214	69467238	CAGE_peak_5_at_CCND1_5end
chr11	69467344	69467411	CAGE_peak_2_at_CCND1_5end
chr11	69467416	69467438	CAGE_peak_7_at_CCND1_5end
chr11	69467457	69467532	CAGE_peak_3_at_CCND1_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr11	GH11I069635	69635738	69649193	2.5	[{'connected_gene': 'CCND1', 'score': 553.61}, {'connected_gene': 'ORAOV1', 'score': 18.79}, {'connected_gene': 'ANO1', 'score': 9.97}]
chr11	GH11I069651	69651876	69652574	0.38	[{'connected_gene': 'CCND1', 'score': 0.39}, {'connected_gene': 'ORAOV1', 'score': 0.34}]
chr11	GH11I069653	69653393	69653750	0.31	[{'connected_gene': 'CCND1', 'score': 0.39}, {'connected_gene': 'ORAOV1', 'score': 0.34}]
chr11	GH11I069258	69258010	69259083	0.87	[{'connected_gene': 'CCND1', 'score': 5.58}, {'connected_gene': 'GC11M069240', 'score': 0.39}, {'connected_gene': 'LOC105369368', 'score': 0.34}]
chr11	GH11I069667	69667191	69668767	0.89	[{'connected_gene': 'CCND1', 'score': 11.25}, {'connected_gene': 'MRGPRF-AS1', 'score': 9.47}, {'connected_gene': 'MRGPRF', 'score': 9.47}, {'connected_gene': 'ORAOV1', 'score': 6.04}, {'connected_gene': 'GC11M069658', 'score': 0.12}]
chr11	GH11I069636	69635273	69635422	0.31	[{'connected_gene': 'CCND1', 'score': 0.44}, {'connected_gene': 'GC11P069613', 'score': 0.34}]
chr11	GH11I069634	69634508	69635040	0.59	[{'connected_gene': 'CCND1', 'score': 0.44}, {'connected_gene': 'GC11P069613', 'score': 0.34}]
chr11	GH11I069654	69653996	69656516	1.16	[{'connected_gene': 'IGHMBP2', 'score': 12.44}, {'connected_gene': 'CCND1', 'score': 0.39}, {'connected_gene': 'ORAOV1', 'score': 0.34}]
chr11	GH11I069673	69673160	69676289	2.06	[{'connected_gene': 'ORAOV1', 'score': 565.65}, {'connected_gene': 'CCND1', 'score': 0.29}, {'connected_gene': 'GC11M069658', 'score': 0.13}]
chr11	GH11I069669	69669698	69670632	0.86	[{'connected_gene': 'ORAOV1', 'score': 0.44}, {'connected_gene': 'CCND1', 'score': 0.31}, {'connected_gene': 'GC11M069658', 'score': 0.12}]
chr11	GH11I069649	69649609	69651329	0.66	[{'connected_gene': 'ORAOV1', 'score': 11.94}, {'connected_gene': 'CCND1', 'score': 0.44}]
chr11	GH11I069657	69657335	69659455	1.1	[{'connected_gene': 'MRGPRF', 'score': 9.46}, {'connected_gene': 'MRGPRF-AS1', 'score': 9.46}, {'connected_gene': 'ANO1-AS1', 'score': 9.08}, {'connected_gene': 'ORAOV1', 'score': 5.98}, {'connected_gene': 'CCND1', 'score': 0.37}, {'connected_gene': 'GC11M069658', 'score': 0.11}]
chr11	GH11I069615	69615406	69616037	0.75	[{'connected_gene': 'GC11P069613', 'score': 0.77}, {'connected_gene': 'CCND1', 'score': 0.31}]
chr11	GH11I069270	69270967	69272191	0.66	[{'connected_gene': 'GC11M069240', 'score': 550.77}, {'connected_gene': 'MYEOV', 'score': 12.45}, {'connected_gene': 'PPFIA1', 'score': 9.97}, {'connected_gene': 'MRGPRF-AS1', 'score': 5.06}, {'connected_gene': 'CCND1', 'score': 4.75}]
chr11	GH11I069442	69442149	69445729	1.76	[{'connected_gene': 'ENSG00000255606', 'score': 550.77}, {'connected_gene': 'ENSG00000246889', 'score': 14.28}, {'connected_gene': 'ORAOV1', 'score': 13.59}, {'connected_gene': 'PPFIA1', 'score': 10.02}, {'connected_gene': 'CCND1', 'score': 2.82}, {'connected_gene': 'LOC102724265', 'score': 0.37}]
chr11	GH11I069368	69368189	69368402	0.61	[{'connected_gene': 'GC11P069370', 'score': 550.77}, {'connected_gene': 'ORAOV1', 'score': 11.4}, {'connected_gene': 'MYEOV', 'score': 7.86}, {'connected_gene': 'CCND1', 'score': 3.6}, {'connected_gene': 'IFITM9P', 'score': 0.21}, {'connected_gene': 'LOC105369370', 'score': 0.2}]