PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000468480	[[26706252, 26706589], [26789610, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26796139, 26796398]]	None
ENST00000346166	[[26786904, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26795918, 26795979]]	[[26787960, 26789729], [26792647, 26792743], [26793593, 26793786]]
ENST00000381588	[[26786904, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26796139, 26796791]]	[[26787960, 26789729], [26792647, 26792743], [26793593, 26793786]]
ENST00000381570	[[26786911, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26795650, 26795840]]	[[26787960, 26789729], [26792647, 26792743], [26793593, 26793786]]
ENST00000399762	[[26787922, 26788906], [26789610, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26795918, 26795949]]	[[26787960, 26788906], [26789610, 26789654]]
ENST00000498039	[[26789275, 26789729], [26792647, 26792725], [26793593, 26793804], [26795384, 26795467], [26795918, 26795947]]	None
ENST00000476347	[[26793432, 26793804], [26795384, 26795467], [26795650, 26795828]]	None
ENST00000474280	[[26795389, 26795467], [26795971, 26796226]]	None
NM_183045	[[26706252, 26706589], [26789610, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26796139, 26796508]]	[[26706568, 26706589], [26789610, 26789729], [26792647, 26792743], [26793593, 26793786]]
NM_183044	[[26786904, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26795650, 26795894]]	[[26787960, 26789729], [26792647, 26792743], [26793593, 26793786]]
NM_183043	[[26786904, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26795918, 26796028]]	[[26787960, 26789729], [26792647, 26792743], [26793593, 26793786]]
NM_005977	[[26786904, 26789729], [26792647, 26792743], [26793593, 26793804], [26795384, 26795467], [26796139, 26796508]]	[[26787960, 26789729], [26792647, 26792743], [26793593, 26793786]]

Promoter

Chrom	Start	End	Description
chr13	26795934	26795995	CAGE_peak_2_at_RNF6_5end
chr13	26796392	26796463	CAGE_peak_1_at_RNF6_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr13	GH13I026185	26185454	26188027	1.46	[{'connected_gene': 'RNF6', 'score': 11.73}, {'connected_gene': 'WASF3', 'score': 1.37}, {'connected_gene': 'ATP8A2P3', 'score': 0.29}, {'connected_gene': 'ENSG00000277368', 'score': 0.28}]
chr13	GH13I026503	26503000	26503201	0.63	[{'connected_gene': 'RNF6', 'score': 10.06}, {'connected_gene': 'WASF3', 'score': 0.23}, {'connected_gene': 'GC13P026404', 'score': 0.15}]
chr13	GH13I026497	26497466	26499622	0.74	[{'connected_gene': 'RNF6', 'score': 10.06}, {'connected_gene': 'WASF3', 'score': 4.95}, {'connected_gene': 'GC13P026404', 'score': 0.16}]
chr13	GH13I026441	26441961	26443707	0.58	[{'connected_gene': 'RNF6', 'score': 10.05}, {'connected_gene': 'CDK8', 'score': 8.05}, {'connected_gene': 'GC13P026404', 'score': 0.28}, {'connected_gene': 'WASF3', 'score': 0.14}]
chr13	GH13I026208	26208244	26208813	0.2	[{'connected_gene': 'RNF6', 'score': 5.66}, {'connected_gene': 'ENSG00000277368', 'score': 0.39}, {'connected_gene': 'ATP8A2P3', 'score': 0.23}]
chr13	GH13I026184	26184804	26184973	0.57	[{'connected_gene': 'RNF6', 'score': 11.34}, {'connected_gene': 'ATP8A2P3', 'score': 0.29}, {'connected_gene': 'ENSG00000277368', 'score': 0.28}]
chr13	GH13I026186	26185000	26185200	0.57	[{'connected_gene': 'RNF6', 'score': 11.34}, {'connected_gene': 'ATP8A2P3', 'score': 0.29}, {'connected_gene': 'ENSG00000277368', 'score': 0.28}]
chr13	GH13I026219	26219998	26223638	2.07	[{'connected_gene': 'RNF6', 'score': 557.57}, {'connected_gene': 'ENSG00000277368', 'score': 550.77}, {'connected_gene': 'ATP8A2P3', 'score': 0.2}]
chr13	GH13I026225	26225547	26227188	0.46	[{'connected_gene': 'RNF6', 'score': 7.77}, {'connected_gene': 'ENSG00000271559', 'score': 0.77}]
chr13	GH13I026253	26253401	26256547	2.02	[{'connected_gene': 'CDK8', 'score': 550.77}, {'connected_gene': 'RNF6', 'score': 11.67}, {'connected_gene': 'ENSG00000278413', 'score': 0.15}]
chr13	GH13I026168	26168158	26169251	0.2	[{'connected_gene': 'ATP8A2P3', 'score': 0.39}, {'connected_gene': 'RNF6', 'score': 0.23}, {'connected_gene': 'ENSG00000277368', 'score': 0.23}]