PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000359842	[[165370158, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165397955, 165398203], [165414081, 165414433]]	[[165370499, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165397955, 165398203], [165414081, 165414130]]
ENST00000465764	[[165406164, 165406438], [165414081, 165414409]]	None
ENST00000470566	[[165379986, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165393987, 165394209]]	None
NM_001256570	[[165370158, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165393987, 165394045], [165397955, 165398203], [165414081, 165414592]]	[[165370499, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389179]]
NM_006917	[[165370158, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165397955, 165398203], [165414081, 165414592]]	[[165370499, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165397955, 165398203], [165414081, 165414130]]
NR_033824	[[165406164, 165406438], [165414081, 165414592]]	None
NM_001256571	[[165370158, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389251], [165393987, 165394221]]	[[165370499, 165370647], [165376048, 165376154], [165377463, 165377555], [165378794, 165378927], [165379938, 165380068], [165380185, 165380346], [165386277, 165386457], [165389106, 165389179]]

Promoter

Chrom	Start	End	Description
chr1	165394215	165394226	CAGE_peak_8_at_RXRG_5end
chr1	165414227	165414242	CAGE_peak_2_at_RXRG_5end
chr1	165414259	165414273	CAGE_peak_6_at_RXRG_5end
chr1	165414280	165414289	CAGE_peak_10_at_RXRG_5end
chr1	165414304	165414313	CAGE_peak_12_at_RXRG_5end
chr1	165414325	165414369	CAGE_peak_1_at_RXRG_5end
chr1	165414382	165414394	CAGE_peak_4_at_RXRG_5end
chr1	165414414	165414430	CAGE_peak_3_at_RXRG_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I165398	165398084	165398233	0.38	[{'connected_gene': 'RXRG', 'score': 10.75}, {'connected_gene': 'MGST3', 'score': 10.4}, {'connected_gene': 'LMX1A', 'score': 0.26}, {'connected_gene': 'GC01M165392', 'score': 0.26}]
chr1	GH01I165423	165423799	165425981	0.72	[{'connected_gene': 'RXRG', 'score': 11.45}, {'connected_gene': 'GC01M165392', 'score': 0.39}, {'connected_gene': 'LMX1A', 'score': 0.2}]
chr1	GH01I165486	165486409	165487534	0.38	[{'connected_gene': 'RXRG', 'score': 11.38}, {'connected_gene': 'ENSG00000230748', 'score': 0.39}, {'connected_gene': 'LOC400794', 'score': 0.15}]
chr1	GH01I165482	165482024	165482740	0.83	[{'connected_gene': 'RXRG', 'score': 11.39}, {'connected_gene': 'ENSG00000230748', 'score': 0.37}, {'connected_gene': 'LOC400794', 'score': 0.15}]
chr1	GH01I165537	165537451	165537661	0.22	[{'connected_gene': 'RXRG', 'score': 10.4}, {'connected_gene': 'ENSG00000236206', 'score': 9.31}, {'connected_gene': 'LOC105371565', 'score': 0.77}, {'connected_gene': 'LRRC52', 'score': 0.44}, {'connected_gene': 'LOC400794', 'score': 0.26}]
chr1	GH01I165236	165236048	165236281	0.76	[{'connected_gene': 'RXRG', 'score': 2.52}, {'connected_gene': 'LOC102725140', 'score': 0.34}, {'connected_gene': 'LMX1A', 'score': 0.13}]
chr1	GH01I165235	165235515	165235885	0.8	[{'connected_gene': 'RXRG', 'score': 6.17}, {'connected_gene': 'LOC102725140', 'score': 0.37}, {'connected_gene': 'LMX1A', 'score': 0.13}]
chr1	GH01I165443	165443173	165445841	1.36	[{'connected_gene': 'RXRG', 'score': 550.77}, {'connected_gene': 'GC01M165392', 'score': 0.44}]
chr1	GH01I165452	165452117	165452970	0.2	[{'connected_gene': 'RXRG', 'score': 0.44}, {'connected_gene': 'ENSG00000230748', 'score': 0.25}]
chr1	GH01I165538	165538770	165540314	0.72	[{'connected_gene': 'LRRC52', 'score': 10.84}, {'connected_gene': 'RXRG', 'score': 10.4}, {'connected_gene': 'MGST3', 'score': 5.76}, {'connected_gene': 'LOC105371565', 'score': 0.77}, {'connected_gene': 'LOC400794', 'score': 0.26}]
chr1	GH01I165593	165593044	165593213	0.65	[{'connected_gene': 'MGST3', 'score': 11.06}, {'connected_gene': 'RXRG', 'score': 10.17}, {'connected_gene': 'LMX1A', 'score': 10.01}, {'connected_gene': 'TRK-CTT13-1', 'score': 0.77}, {'connected_gene': 'LOC400794', 'score': 0.39}]
chr1	GH01I165601	165601764	165602001	0.93	[{'connected_gene': 'MGST3', 'score': 17.49}, {'connected_gene': 'RXRG', 'score': 9.73}, {'connected_gene': 'ENSG00000236206', 'score': 0.77}]
chr1	GH01I165383	165383184	165383698	0.38	[{'connected_gene': 'LMX1A', 'score': 11.4}, {'connected_gene': 'RXRG', 'score': 10.4}, {'connected_gene': 'GC01M165392', 'score': 0.22}]