PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000368722	[[153430219, 153430446], [153431348, 153431506], [153432293, 153432350]]	[[153430281, 153430446], [153431348, 153431489]]
ENST00000368723	[[153430219, 153430446], [153431348, 153431506], [153433083, 153433177]]	[[153430281, 153430446], [153431348, 153431489]]
NM_002963	[[153430219, 153430446], [153431348, 153431506], [153433083, 153433137]]	[[153430281, 153430446], [153431348, 153431489]]

Promoter

Chrom	Start	End	Description
chr1	153430341	153430348	CAGE_peak_6_at_S100A7_5end
chr1	153430422	153430443	CAGE_peak_3_at_S100A7_5end
chr1	153431372	153431378	CAGE_peak_4_at_S100A7_5end
chr1	153433120	153433129	CAGE_peak_1_at_S100A7_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr1	GH01I153460	153460639	153460698	0.5	[{'connected_gene': 'S100A7', 'score': 550.77}, {'connected_gene': 'S100A7P2', 'score': 0.37}]
chr1	GH01I153489	153489797	153491857	1.31	[{'connected_gene': 'PGLYRP4', 'score': 11.21}, {'connected_gene': 'S100A9', 'score': 10.8}, {'connected_gene': 'RNU6-160P', 'score': 10.26}, {'connected_gene': 'S100A1', 'score': 10.14}, {'connected_gene': 'CHTOP', 'score': 10.13}, {'connected_gene': 'S100A13', 'score': 10.13}, {'connected_gene': 'PGLYRP3', 'score': 9.78}, {'connected_gene': 'RN7SL44P', 'score': 7.32}, {'connected_gene': 'S100A3', 'score': 6.01}, {'connected_gene': 'GC01M153500', 'score': 0.44}, {'connected_gene': 'S100A7', 'score': 0.29}]
chr1	GH01I153465	153465425	153466744	0.71	[{'connected_gene': 'PGLYRP4', 'score': 10.49}, {'connected_gene': 'RNU6-160P', 'score': 9.78}, {'connected_gene': 'S100A3', 'score': 5.75}, {'connected_gene': 'S100A7', 'score': 0.44}, {'connected_gene': 'GC01M153500', 'score': 0.29}, {'connected_gene': 'RN7SL44P', 'score': 0.29}]
chr1	GH01I153492	153492583	153494659	0.43	[{'connected_gene': 'RN7SL44P', 'score': 12.87}, {'connected_gene': 'ENSG00000238279', 'score': 11.66}, {'connected_gene': 'S100A6', 'score': 11.64}, {'connected_gene': 'S100A5', 'score': 11.63}, {'connected_gene': 'S100A3', 'score': 11.6}, {'connected_gene': 'S100A4', 'score': 11.6}, {'connected_gene': 'PGLYRP4', 'score': 11.21}, {'connected_gene': 'S100A9', 'score': 10.8}, {'connected_gene': 'RNU6-160P', 'score': 10.35}, {'connected_gene': 'S100A1', 'score': 10.13}, {'connected_gene': 'S100A13', 'score': 10.13}, {'connected_gene': 'CHTOP', 'score': 10.13}, {'connected_gene': 'PGLYRP3', 'score': 9.78}, {'connected_gene': 'S100A16', 'score': 9.71}, {'connected_gene': 'S100A14', 'score': 9.71}, {'connected_gene': 'GC01M153500', 'score': 0.44}, {'connected_gene': 'S100A7', 'score': 0.29}]
chr1	GH01I153494	153494985	153495154	0.84	[{'connected_gene': 'ENSG00000238279', 'score': 11.66}, {'connected_gene': 'S100A6', 'score': 11.64}, {'connected_gene': 'S100A5', 'score': 11.63}, {'connected_gene': 'S100A3', 'score': 11.61}, {'connected_gene': 'S100A4', 'score': 11.6}, {'connected_gene': 'PGLYRP4', 'score': 11.19}, {'connected_gene': 'S100A9', 'score': 10.37}, {'connected_gene': 'RNU6-160P', 'score': 10.35}, {'connected_gene': 'S100A16', 'score': 9.71}, {'connected_gene': 'S100A14', 'score': 9.71}, {'connected_gene': 'GC01M153500', 'score': 0.44}, {'connected_gene': 'RN7SL44P', 'score': 0.44}, {'connected_gene': 'S100A7', 'score': 0.29}]