PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000370355	[[102106880, 102107288], [102107820, 102108103], [102112122, 102112253], [102114183, 102114389], [102116288, 102116521], [102120490, 102124591]]	[[102107261, 102107288], [102107820, 102108103], [102112122, 102112253], [102114183, 102114389], [102116288, 102116521], [102120490, 102120690]]
NM_005063	[[102106771, 102107288], [102107820, 102108103], [102112122, 102112253], [102114183, 102114389], [102116288, 102116521], [102120490, 102124588]]	[[102107261, 102107288], [102107820, 102108103], [102112122, 102112253], [102114183, 102114389], [102116288, 102116521], [102120490, 102120690]]

Promoter

Chrom	Start	End	Description
chr10	102106235	102106274	CAGE_peak_14_at_SCD_5end
chr10	102106384	102106429	CAGE_peak_15_at_SCD_5end
chr10	102106829	102106869	CAGE_peak_2_at_SCD_5end
chr10	102106933	102106948	CAGE_peak_4_at_SCD_5end
chr10	102106957	102106970	CAGE_peak_5_at_SCD_5end
chr10	102106982	102107015	CAGE_peak_1_at_SCD_5end
chr10	102107016	102107024	CAGE_peak_10_at_SCD_5end
chr10	102107051	102107062	CAGE_peak_12_at_SCD_5end
chr10	102107065	102107089	CAGE_peak_6_at_SCD_5end
chr10	102107103	102107119	CAGE_peak_3_at_SCD_5end
chr10	102107148	102107161	CAGE_peak_9_at_SCD_5end
chr10	102107168	102107180	CAGE_peak_11_at_SCD_5end
chr10	102107191	102107209	CAGE_peak_7_at_SCD_5end
chr10	102107745	102107756	CAGE_peak_19_at_SCD_5end
chr10	102107808	102107865	CAGE_peak_8_at_SCD_5end
chr10	102107884	102107910	CAGE_peak_13_at_SCD_5end
chr10	102107942	102107961	CAGE_peak_16_at_SCD_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr10	GH10I100358	100358704	100360775	1.18	[{'connected_gene': 'PKD2L1', 'score': 9.03}, {'connected_gene': 'OLMALINC', 'score': 0.39}, {'connected_gene': 'SCD', 'score': 0.39}]
chr10	GH10I100356	100356419	100358218	0.74	[{'connected_gene': 'PKD2L1', 'score': 19.32}, {'connected_gene': 'SCD', 'score': 0.39}, {'connected_gene': 'OLMALINC', 'score': 0.37}]
chr10	GH10I100345	100345453	100351573	2.26	[{'connected_gene': 'PKD2L1', 'score': 573.79}, {'connected_gene': 'SCD', 'score': 550.77}, {'connected_gene': 'SEC31B', 'score': 13.5}, {'connected_gene': 'LOC101927300', 'score': 4.68}, {'connected_gene': 'ENSG00000231188', 'score': 0.77}, {'connected_gene': 'OLMALINC', 'score': 0.31}]
chr10	GH10I100361	100361123	100366332	1.33	[{'connected_gene': 'PKD2L1', 'score': 6.13}, {'connected_gene': 'SEC31B', 'score': 5.79}, {'connected_gene': 'OLMALINC', 'score': 5.04}, {'connected_gene': 'SCD', 'score': 0.37}]
chr10	GH10I100369	100369042	100375845	2.14	[{'connected_gene': 'OLMALINC', 'score': 550.77}, {'connected_gene': 'PHBP9', 'score': 24.82}, {'connected_gene': 'SEC31B', 'score': 21.93}, {'connected_gene': 'EBAG9P1', 'score': 19.65}, {'connected_gene': 'LOC101927300', 'score': 13.51}, {'connected_gene': 'SCD', 'score': 12.9}, {'connected_gene': 'ENSG00000231188', 'score': 12.9}, {'connected_gene': 'CHUK', 'score': 12.04}, {'connected_gene': 'ENSG00000272572', 'score': 11.31}, {'connected_gene': 'NDUFB8', 'score': 10.5}, {'connected_gene': 'HIF1AN', 'score': 10.5}, {'connected_gene': 'ENSG00000255339', 'score': 10.5}, {'connected_gene': 'LZTS2', 'score': 9.8}, {'connected_gene': 'PDZD7', 'score': 9.67}, {'connected_gene': 'PKD2L1', 'score': 5.7}, {'connected_gene': 'CWF19L1', 'score': 1.52}]
chr10	GH10I100495	100495980	100496598	0.2	[{'connected_gene': 'WNT8B', 'score': 11.4}, {'connected_gene': 'ENSG00000231188', 'score': 11.29}, {'connected_gene': 'SCD', 'score': 11.29}, {'connected_gene': 'SEC31B', 'score': 11.18}, {'connected_gene': 'NDUFB8', 'score': 11.13}, {'connected_gene': 'HIF1AN', 'score': 11.13}, {'connected_gene': 'ENSG00000255339', 'score': 11.13}, {'connected_gene': 'GC10M100500', 'score': 0.77}, {'connected_gene': 'LOC105378452', 'score': 0.37}]
chr10	GH10I100497	100497004	100498114	0.2	[{'connected_gene': 'WNT8B', 'score': 11.4}, {'connected_gene': 'ENSG00000231188', 'score': 11.28}, {'connected_gene': 'SCD', 'score': 11.28}, {'connected_gene': 'SEC31B', 'score': 11.18}, {'connected_gene': 'NDUFB8', 'score': 11.13}, {'connected_gene': 'HIF1AN', 'score': 11.13}, {'connected_gene': 'ENSG00000255339', 'score': 11.13}, {'connected_gene': 'GC10M100500', 'score': 0.77}, {'connected_gene': 'LOC105378452', 'score': 0.37}]
chr10	GH10I100786	100786833	100788338	0.8	[{'connected_gene': 'SCD', 'score': 4.86}, {'connected_gene': 'PAX2', 'score': 0.23}, {'connected_gene': 'GC10M100747', 'score': 0.18}]
chr10	GH10I100376	100376201	100376600	0.66	[{'connected_gene': 'SCD', 'score': 12.25}, {'connected_gene': 'ENSG00000231188', 'score': 12.24}, {'connected_gene': 'SEC31B', 'score': 10.02}, {'connected_gene': 'NDUFB8', 'score': 10.02}, {'connected_gene': 'HIF1AN', 'score': 10.02}, {'connected_gene': 'ENSG00000255339', 'score': 10.02}, {'connected_gene': 'PIR60373', 'score': 0.77}, {'connected_gene': 'OLMALINC', 'score': 0.77}]
chr10	GH10I100506	100506644	100506793	0.69	[{'connected_gene': 'SCD', 'score': 11.29}, {'connected_gene': 'ENSG00000231188', 'score': 11.28}, {'connected_gene': 'GC10M100501', 'score': 0.44}, {'connected_gene': 'GC10M100502', 'score': 0.44}, {'connected_gene': 'SEC31B', 'score': 0.39}, {'connected_gene': 'ENSG00000255339', 'score': 0.34}]
chr10	GH10I100826	100826103	100829939	0.88	[{'connected_gene': 'PAX2', 'score': 11.03}, {'connected_gene': 'SCD', 'score': 4.91}, {'connected_gene': 'GC10M100747', 'score': 0.28}]
chr10	GH10I100310	100310904	100311770	0.56	[{'connected_gene': 'BLOC1S2', 'score': 12.12}, {'connected_gene': 'CWF19L1', 'score': 12.05}, {'connected_gene': 'ENSG00000231188', 'score': 11.36}, {'connected_gene': 'SCD', 'score': 11.36}, {'connected_gene': 'MRPL43', 'score': 4.19}, {'connected_gene': 'PKD2L1', 'score': 0.28}]
chr10	GH10I100307	100307736	100308064	0.89	[{'connected_gene': 'BLOC1S2', 'score': 21.85}, {'connected_gene': 'CWF19L1', 'score': 12.05}, {'connected_gene': 'ENSG00000231188', 'score': 11.36}, {'connected_gene': 'SCD', 'score': 11.36}, {'connected_gene': 'MRPL43', 'score': 4.61}, {'connected_gene': 'ERLIN1', 'score': 1.81}, {'connected_gene': 'DNMBP', 'score': 1.23}, {'connected_gene': 'PKD2L1', 'score': 0.28}]
chr10	GH10I100424	100424883	100425693	0.52	[{'connected_gene': 'SEC31B', 'score': 44.74}, {'connected_gene': 'ENSG00000231188', 'score': 12.31}, {'connected_gene': 'SCD', 'score': 12.31}, {'connected_gene': 'ENSG00000212325', 'score': 0.31}, {'connected_gene': 'WNT8B', 'score': 0.28}, {'connected_gene': 'OLMALINC', 'score': 0.23}]
chr10	GH10I100434	100433864	100434053	0.96	[{'connected_gene': 'SEC31B', 'score': 54.37}, {'connected_gene': 'ENSG00000231188', 'score': 12.24}, {'connected_gene': 'SCD', 'score': 12.24}, {'connected_gene': 'WNT8B', 'score': 11.65}, {'connected_gene': 'NDUFB8', 'score': 10.42}, {'connected_gene': 'HIF1AN', 'score': 10.42}, {'connected_gene': 'ENSG00000255339', 'score': 10.42}, {'connected_gene': 'ENSG00000212325', 'score': 0.28}, {'connected_gene': 'OLMALINC', 'score': 0.21}]
chr10	GH10I100507	100507534	100511621	1.1	[{'connected_gene': 'SEC31B', 'score': 51.16}, {'connected_gene': 'ENSG00000231188', 'score': 11.28}, {'connected_gene': 'SCD', 'score': 11.28}, {'connected_gene': 'GC10M100501', 'score': 0.44}, {'connected_gene': 'GC10M100502', 'score': 0.44}, {'connected_gene': 'ENSG00000255339', 'score': 0.34}]
chr10	GH10I100433	100433601	100433801	0.92	[{'connected_gene': 'ENSG00000231188', 'score': 12.24}, {'connected_gene': 'SCD', 'score': 12.24}, {'connected_gene': 'WNT8B', 'score': 11.65}, {'connected_gene': 'SEC31B', 'score': 10.43}, {'connected_gene': 'NDUFB8', 'score': 10.42}, {'connected_gene': 'HIF1AN', 'score': 10.42}, {'connected_gene': 'ENSG00000255339', 'score': 10.42}, {'connected_gene': 'ENSG00000212325', 'score': 0.28}, {'connected_gene': 'OLMALINC', 'score': 0.21}]
chr10	GH10I100503	100503923	100504613	0.31	[{'connected_gene': 'ENSG00000231188', 'score': 11.29}, {'connected_gene': 'SCD', 'score': 11.29}, {'connected_gene': 'HIF1AN', 'score': 6.74}, {'connected_gene': 'GC10M100501', 'score': 0.77}, {'connected_gene': 'GC10M100502', 'score': 0.77}, {'connected_gene': 'SEC31B', 'score': 0.37}]
chr10	GH10I100378	100378004	100378153	0.79	[{'connected_gene': 'PIR60373', 'score': 550.77}, {'connected_gene': 'SEC31B', 'score': 14.31}, {'connected_gene': 'ENSG00000231188', 'score': 12.24}, {'connected_gene': 'SCD', 'score': 12.24}, {'connected_gene': 'NDUFB8', 'score': 10.02}, {'connected_gene': 'HIF1AN', 'score': 10.02}, {'connected_gene': 'ENSG00000255339', 'score': 10.02}, {'connected_gene': 'OLMALINC', 'score': 0.77}]