PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_002983	[[34415601, 34416108], [34416528, 34416643], [34417331, 34417506]]	[[34416017, 34416108], [34416528, 34416643], [34417331, 34417404]]

Promoter

Chrom	Start	End	Description
chr17	34416924	34416935	CAGE_peak_4_at_CCL3_5end
chr17	34417002	34417045	CAGE_peak_2_at_CCL3_5end
chr17	34417479	34417496	CAGE_peak_1_at_CCL3_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I036065	36065811	36067418	0.79	[{'connected_gene': 'CCL5', 'score': 8.39}, {'connected_gene': 'CCL3', 'score': 2.08}, {'connected_gene': 'CCL4', 'score': 1.97}, {'connected_gene': 'MYO19', 'score': 1.84}, {'connected_gene': 'PIGW', 'score': 1.8}, {'connected_gene': 'CCL3L3', 'score': 1.69}, {'connected_gene': 'CCL18', 'score': 0.77}, {'connected_gene': 'ENSG00000277089', 'score': 0.44}]
chr17	GH17I036084	36084098	36086399	0.97	[{'connected_gene': 'CCL4', 'score': 5.83}, {'connected_gene': 'TAF5LP1', 'score': 4.77}, {'connected_gene': 'CCL3', 'score': 0.77}, {'connected_gene': 'ENSG00000277089', 'score': 0.39}]
chr17	GH17I036154	36154281	36154664	0.34	[{'connected_gene': 'CCL4', 'score': 39.81}, {'connected_gene': 'CCL3', 'score': 37.13}, {'connected_gene': 'CCL3L3', 'score': 33.18}, {'connected_gene': 'CCL4L2', 'score': 7.44}, {'connected_gene': 'CCL5', 'score': 2.48}, {'connected_gene': 'CCL23', 'score': 2.22}, {'connected_gene': 'GGNBP2', 'score': 1.51}, {'connected_gene': 'ENSG00000282738', 'score': 0.44}, {'connected_gene': 'LOC101927369', 'score': 0.44}, {'connected_gene': 'GC17P036146', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.44}, {'connected_gene': 'ENSG00000276241', 'score': 0.28}]
chr17	GH17I036058	36058029	36058194	0.23	[{'connected_gene': 'CCL4', 'score': 36.05}, {'connected_gene': 'CCL3', 'score': 34.35}, {'connected_gene': 'CCL3L3', 'score': 33.68}, {'connected_gene': 'CCL15', 'score': 10.8}, {'connected_gene': 'CCL23', 'score': 3.68}, {'connected_gene': 'CCL5', 'score': 2.49}, {'connected_gene': 'LOC105371746', 'score': 0.77}, {'connected_gene': 'GC17M036102', 'score': 0.29}]
chr17	GH17I036102	36102926	36109083	1.81	[{'connected_gene': 'CCL4', 'score': 591.35}, {'connected_gene': 'CCL3', 'score': 41.06}, {'connected_gene': 'CCL3L3', 'score': 35.07}, {'connected_gene': 'CCL5', 'score': 13.6}, {'connected_gene': 'CCL18', 'score': 11.22}, {'connected_gene': 'CCL15', 'score': 10.85}, {'connected_gene': 'PIGW', 'score': 9.55}, {'connected_gene': 'SLFN12L', 'score': 5.42}, {'connected_gene': 'MYO19', 'score': 4.92}, {'connected_gene': 'GGNBP2', 'score': 2.35}, {'connected_gene': 'CCL23', 'score': 1.52}, {'connected_gene': 'GC17P036104', 'score': 0.77}, {'connected_gene': 'GC17P036113', 'score': 0.77}]
chr17	GH17I036081	36081103	36083799	1.08	[{'connected_gene': 'CCL4', 'score': 5.94}, {'connected_gene': 'ENSG00000267074', 'score': 4.27}, {'connected_gene': 'CCL3', 'score': 0.44}, {'connected_gene': 'ENSG00000277089', 'score': 0.44}]
chr17	GH17I036088	36088001	36091824	1.74	[{'connected_gene': 'CCL3', 'score': 550.77}, {'connected_gene': 'CCL18', 'score': 11.08}, {'connected_gene': 'CCL4', 'score': 5.97}, {'connected_gene': 'SLFN12L', 'score': 4.89}, {'connected_gene': 'ENSG00000277089', 'score': 0.37}]
chr17	GH17I036092	36092118	36092586	0.95	[{'connected_gene': 'CCL3', 'score': 41.93}, {'connected_gene': 'CCL3L3', 'score': 38.25}, {'connected_gene': 'CCL4', 'score': 37.12}, {'connected_gene': 'CCL18', 'score': 11.08}, {'connected_gene': 'CCL5', 'score': 2.77}, {'connected_gene': 'GGNBP2', 'score': 1.8}]
chr17	GH17I036083	36083824	36083973	0.4	[{'connected_gene': 'CCL3', 'score': 0.44}, {'connected_gene': 'ENSG00000277089', 'score': 0.39}]
chr17	GH17I036055	36055983	36056443	0.33	[{'connected_gene': 'CCL3L3', 'score': 48.14}, {'connected_gene': 'CCL4', 'score': 43.64}, {'connected_gene': 'CCL3', 'score': 42.17}, {'connected_gene': 'CCL5', 'score': 2.79}, {'connected_gene': 'CCL23', 'score': 2.69}, {'connected_gene': 'LOC105371746', 'score': 0.44}, {'connected_gene': 'GC17M036102', 'score': 0.29}]
chr17	GH17I036149	36148892	36149839	1.38	[{'connected_gene': 'LOC101927369', 'score': 550.77}, {'connected_gene': 'CCL4', 'score': 62.85}, {'connected_gene': 'CCL3', 'score': 61.03}, {'connected_gene': 'CCL3L3', 'score': 52.27}, {'connected_gene': 'CCL5', 'score': 3.0}, {'connected_gene': 'CCL23', 'score': 2.49}, {'connected_gene': 'GGNBP2', 'score': 1.88}, {'connected_gene': 'GC17P036146', 'score': 0.77}, {'connected_gene': 'ENSG00000282738', 'score': 0.39}, {'connected_gene': 'LOC100420851', 'score': 0.39}, {'connected_gene': 'ENSG00000276241', 'score': 0.29}]
chr17	GH17I036148	36148693	36148701	0.5	[{'connected_gene': 'LOC101927369', 'score': 550.77}, {'connected_gene': 'CCL3L3', 'score': 4.2}, {'connected_gene': 'CCL3', 'score': 3.91}, {'connected_gene': 'CCL4', 'score': 3.74}, {'connected_gene': 'LYZL6', 'score': 2.25}, {'connected_gene': 'GC17P036146', 'score': 0.77}, {'connected_gene': 'ENSG00000276241', 'score': 0.29}]
chr17	GH17I035888	35888487	35894010	1.47	[{'connected_gene': 'ENSG00000271394', 'score': 550.77}, {'connected_gene': 'GC17M035888', 'score': 550.77}, {'connected_gene': 'CCL3', 'score': 22.25}, {'connected_gene': 'CCL4', 'score': 20.3}, {'connected_gene': 'CCL3L3', 'score': 18.82}, {'connected_gene': 'TAF15', 'score': 11.89}, {'connected_gene': 'GAS2L2', 'score': 11.52}, {'connected_gene': 'C17orf50', 'score': 9.27}, {'connected_gene': 'HEATR9', 'score': 5.59}, {'connected_gene': 'CCL5', 'score': 3.8}, {'connected_gene': 'SLFN12L', 'score': 2.39}, {'connected_gene': 'LYZL6', 'score': 2.17}, {'connected_gene': 'CCL23', 'score': 1.52}, {'connected_gene': 'GC17M035909', 'score': 0.37}, {'connected_gene': 'PIR57610', 'score': 0.37}, {'connected_gene': 'LRRC37A8P', 'score': 0.37}]
chr17	GH17I036073	36073728	36076338	0.54	[{'connected_gene': 'ENSG00000277089', 'score': 0.77}, {'connected_gene': 'CCL3', 'score': 0.37}]