PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
ENST00000311925	[[34689563, 34689836], [34689926, 34690020], [34690206, 34690339], [34691087, 34691274]]	[[34689815, 34689836], [34689926, 34690020], [34690206, 34690339], [34691087, 34691136]]
ENST00000485502	[[34689568, 34690020], [34690206, 34690235]]	None
ENST00000378800	[[34689853, 34690020], [34690206, 34690339], [34691087, 34691201]]	[[34689887, 34690020], [34690206, 34690339], [34691087, 34691136]]
NM_006274	[[34689566, 34689836], [34689926, 34690020], [34690206, 34690339], [34691087, 34691274]]	[[34689815, 34689836], [34689926, 34690020], [34690206, 34690339], [34691087, 34691136]]

Promoter

Chrom	Start	End	Description
chr9	34691263	34691278	CAGE_peak_1_at_CCL19_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr9	GH09I034743	34743960	34746502	0.46	[{'connected_gene': 'CCL21', 'score': 11.66}, {'connected_gene': 'CCL19', 'score': 10.9}, {'connected_gene': 'PHF24', 'score': 10.39}, {'connected_gene': 'FAM205A', 'score': 8.54}]
chr9	GH09I034709	34709695	34710503	0.7	[{'connected_gene': 'CCL21', 'score': 550.77}, {'connected_gene': 'FAM205BP', 'score': 11.87}, {'connected_gene': 'IL11RA', 'score': 10.95}, {'connected_gene': 'GALT', 'score': 10.92}, {'connected_gene': 'RPP25L', 'score': 5.46}, {'connected_gene': 'FAM205A', 'score': 5.06}, {'connected_gene': 'CCL19', 'score': 0.37}]
chr9	GH09I034691	34691266	34691325	0.5	[{'connected_gene': 'CCL19', 'score': 550.77}, {'connected_gene': 'CCL21', 'score': 0.37}]
chr9	GH09I034123	34123531	34127855	2.04	[{'connected_gene': 'DCAF12', 'score': 556.95}, {'connected_gene': 'ENSG00000228352', 'score': 11.06}, {'connected_gene': 'PIGO', 'score': 9.87}, {'connected_gene': 'ENSG00000260947', 'score': 5.88}, {'connected_gene': 'KIF24', 'score': 4.31}, {'connected_gene': 'CCL19', 'score': 4.08}, {'connected_gene': 'PIRC37', 'score': 0.44}, {'connected_gene': 'GC09P034099', 'score': 0.31}]
chr9	GH09I034899	34899664	34899833	0.65	[{'connected_gene': 'PHF24', 'score': 11.37}, {'connected_gene': 'VCP', 'score': 10.9}, {'connected_gene': 'FANCG', 'score': 10.89}, {'connected_gene': 'ENSG00000234181', 'score': 10.72}, {'connected_gene': 'PIGO', 'score': 10.72}, {'connected_gene': 'STOML2', 'score': 10.72}, {'connected_gene': 'CCL19', 'score': 9.91}, {'connected_gene': 'FAM205C', 'score': 0.77}, {'connected_gene': 'GLULP4', 'score': 0.37}]
chr9	GH09I034700	34700986	34702853	1.07	[{'connected_gene': 'RPP25L', 'score': 6.23}, {'connected_gene': 'DNAJB5', 'score': 4.37}, {'connected_gene': 'CCL21', 'score': 0.44}, {'connected_gene': 'CCL19', 'score': 0.39}]
chr9	GH09I034681	34681860	34682177	0.49	[{'connected_gene': 'ENSG00000230074', 'score': 20.78}, {'connected_gene': 'IL11RA', 'score': 2.09}, {'connected_gene': 'ARID3C', 'score': 2.04}, {'connected_gene': 'CCL19', 'score': 0.44}, {'connected_gene': 'PIR49106', 'score': 0.44}]
chr9	GH09I034083	34083803	34087755	0.66	[{'connected_gene': 'ENSG00000228352', 'score': 550.77}, {'connected_gene': 'NUDT2', 'score': 12.38}, {'connected_gene': 'ENSG00000260947', 'score': 5.98}, {'connected_gene': 'CCL19', 'score': 4.11}, {'connected_gene': 'GC09P034099', 'score': 0.39}, {'connected_gene': 'DCAF12', 'score': 0.26}]
chr9	GH09I034685	34685204	34687001	0.31	[{'connected_gene': 'ENSG00000230074', 'score': 22.51}, {'connected_gene': 'GALT', 'score': 15.84}, {'connected_gene': 'RPP25L', 'score': 12.41}, {'connected_gene': 'CCL19', 'score': 0.44}, {'connected_gene': 'PIR49106', 'score': 0.39}]
chr9	GH09I034575	34575665	34580790	0.77	[{'connected_gene': 'GC09P034579', 'score': 550.77}, {'connected_gene': 'GC09P034580', 'score': 550.77}, {'connected_gene': 'GALT', 'score': 26.13}, {'connected_gene': 'RPP25L', 'score': 22.39}, {'connected_gene': 'ENSG00000230074', 'score': 15.55}, {'connected_gene': 'ENHO', 'score': 15.51}, {'connected_gene': 'FAM219A', 'score': 14.09}, {'connected_gene': 'ENSG00000232983', 'score': 13.54}, {'connected_gene': 'ARID3C', 'score': 12.12}, {'connected_gene': 'CNTFR', 'score': 11.37}, {'connected_gene': 'ENSG00000230729', 'score': 10.98}, {'connected_gene': 'SIGMAR1', 'score': 10.74}, {'connected_gene': 'DNAI1', 'score': 10.51}, {'connected_gene': 'DCTN3', 'score': 10.44}, {'connected_gene': 'IL11RA', 'score': 10.15}, {'connected_gene': 'CCL19', 'score': 9.62}, {'connected_gene': 'DNAJB5', 'score': 4.58}, {'connected_gene': 'PHF24', 'score': 3.22}, {'connected_gene': 'LOC105376023', 'score': 0.44}, {'connected_gene': 'CNTFR-AS1', 'score': 0.39}]