PsyMuKB

Visualization of regulatory element with DNMs in transcripts

Visualization of de novo variants in transcripts

Visualization of original de novo CNV set

There is no corresponding data published yet, we will update it when such data available.

Transcripts

Transcript ID	Transcript exon region	Coding exon region
NM_005064	[[34340095, 34340348], [34340783, 34340949], [34341373, 34341433], [34344858, 34345005]]	[[34340236, 34340348], [34340783, 34340949], [34341373, 34341433], [34344858, 34344934]]
NM_145898	[[34340095, 34340348], [34340783, 34340898], [34341373, 34341433], [34344858, 34345005]]	[[34340236, 34340348], [34340783, 34340898], [34341373, 34341433], [34344858, 34344934]]

Promoter

Chrom	Start	End	Description
chr17	34344991	34345000	CAGE_peak_2_at_CCL23_5end
chr17	34345002	34345016	CAGE_peak_1_at_CCL23_5end

Enhancer

Chrom	Start	End	Genehancer ID	Score	Attributes
chr17	GH17I035990	35990176	35992383	0.71	[{'connected_gene': 'CCL23', 'score': 12.2}, {'connected_gene': 'CCL18', 'score': 10.61}, {'connected_gene': 'CCL15', 'score': 10.57}, {'connected_gene': 'GC17M036109', 'score': 0.77}, {'connected_gene': 'ENSG00000275431', 'score': 0.44}, {'connected_gene': 'ENSG00000275944', 'score': 0.39}, {'connected_gene': 'CCL15-CCL14', 'score': 0.39}]
chr17	GH17I036017	36017801	36018400	0.99	[{'connected_gene': 'CCL23', 'score': 565.06}, {'connected_gene': 'CCL15', 'score': 6.45}, {'connected_gene': 'GC17M036102', 'score': 0.44}]
chr17	GH17I036154	36154281	36154664	0.34	[{'connected_gene': 'CCL4', 'score': 39.81}, {'connected_gene': 'CCL3', 'score': 37.13}, {'connected_gene': 'CCL3L3', 'score': 33.18}, {'connected_gene': 'CCL4L2', 'score': 7.44}, {'connected_gene': 'CCL5', 'score': 2.48}, {'connected_gene': 'CCL23', 'score': 2.22}, {'connected_gene': 'GGNBP2', 'score': 1.51}, {'connected_gene': 'ENSG00000282738', 'score': 0.44}, {'connected_gene': 'LOC101927369', 'score': 0.44}, {'connected_gene': 'GC17P036146', 'score': 0.44}, {'connected_gene': 'LOC100420851', 'score': 0.44}, {'connected_gene': 'ENSG00000276241', 'score': 0.28}]
chr17	GH17I036058	36058029	36058194	0.23	[{'connected_gene': 'CCL4', 'score': 36.05}, {'connected_gene': 'CCL3', 'score': 34.35}, {'connected_gene': 'CCL3L3', 'score': 33.68}, {'connected_gene': 'CCL15', 'score': 10.8}, {'connected_gene': 'CCL23', 'score': 3.68}, {'connected_gene': 'CCL5', 'score': 2.49}, {'connected_gene': 'LOC105371746', 'score': 0.77}, {'connected_gene': 'GC17M036102', 'score': 0.29}]
chr17	GH17I036102	36102926	36109083	1.81	[{'connected_gene': 'CCL4', 'score': 591.35}, {'connected_gene': 'CCL3', 'score': 41.06}, {'connected_gene': 'CCL3L3', 'score': 35.07}, {'connected_gene': 'CCL5', 'score': 13.6}, {'connected_gene': 'CCL18', 'score': 11.22}, {'connected_gene': 'CCL15', 'score': 10.85}, {'connected_gene': 'PIGW', 'score': 9.55}, {'connected_gene': 'SLFN12L', 'score': 5.42}, {'connected_gene': 'MYO19', 'score': 4.92}, {'connected_gene': 'GGNBP2', 'score': 2.35}, {'connected_gene': 'CCL23', 'score': 1.52}, {'connected_gene': 'GC17P036104', 'score': 0.77}, {'connected_gene': 'GC17P036113', 'score': 0.77}]
chr17	GH17I036055	36055983	36056443	0.33	[{'connected_gene': 'CCL3L3', 'score': 48.14}, {'connected_gene': 'CCL4', 'score': 43.64}, {'connected_gene': 'CCL3', 'score': 42.17}, {'connected_gene': 'CCL5', 'score': 2.79}, {'connected_gene': 'CCL23', 'score': 2.69}, {'connected_gene': 'LOC105371746', 'score': 0.44}, {'connected_gene': 'GC17M036102', 'score': 0.29}]
chr17	GH17I036149	36148892	36149839	1.38	[{'connected_gene': 'LOC101927369', 'score': 550.77}, {'connected_gene': 'CCL4', 'score': 62.85}, {'connected_gene': 'CCL3', 'score': 61.03}, {'connected_gene': 'CCL3L3', 'score': 52.27}, {'connected_gene': 'CCL5', 'score': 3.0}, {'connected_gene': 'CCL23', 'score': 2.49}, {'connected_gene': 'GGNBP2', 'score': 1.88}, {'connected_gene': 'GC17P036146', 'score': 0.77}, {'connected_gene': 'ENSG00000282738', 'score': 0.39}, {'connected_gene': 'LOC100420851', 'score': 0.39}, {'connected_gene': 'ENSG00000276241', 'score': 0.29}]
chr17	GH17I035533	35533194	35542151	2.13	[{'connected_gene': 'SLFN12L', 'score': 565.18}, {'connected_gene': 'AP2B1', 'score': 15.59}, {'connected_gene': 'CCL5', 'score': 13.23}, {'connected_gene': 'ZNF830', 'score': 12.83}, {'connected_gene': 'PEX12', 'score': 12.06}, {'connected_gene': 'LIG3', 'score': 11.68}, {'connected_gene': 'SLFN5', 'score': 7.32}, {'connected_gene': 'TAF5LP1', 'score': 6.78}, {'connected_gene': 'GAS2L2', 'score': 5.5}, {'connected_gene': 'SLFN11', 'score': 5.33}, {'connected_gene': 'CCL14', 'score': 4.84}, {'connected_gene': 'RFFL', 'score': 4.25}, {'connected_gene': 'CCL23', 'score': 1.28}, {'connected_gene': 'ENSG00000267035', 'score': 0.77}, {'connected_gene': 'GC17P035523', 'score': 0.39}]
chr17	GH17I035486	35486628	35488800	1.74	[{'connected_gene': 'SLFN12L', 'score': 560.95}, {'connected_gene': 'SLFN13', 'score': 11.59}, {'connected_gene': 'SLFN5', 'score': 10.24}, {'connected_gene': 'NLE1', 'score': 10.15}, {'connected_gene': 'CCL23', 'score': 4.66}, {'connected_gene': 'E2F3P1', 'score': 0.77}, {'connected_gene': 'ENSG00000267349', 'score': 0.44}]
chr17	GH17I035888	35888487	35894010	1.47	[{'connected_gene': 'ENSG00000271394', 'score': 550.77}, {'connected_gene': 'GC17M035888', 'score': 550.77}, {'connected_gene': 'CCL3', 'score': 22.25}, {'connected_gene': 'CCL4', 'score': 20.3}, {'connected_gene': 'CCL3L3', 'score': 18.82}, {'connected_gene': 'TAF15', 'score': 11.89}, {'connected_gene': 'GAS2L2', 'score': 11.52}, {'connected_gene': 'C17orf50', 'score': 9.27}, {'connected_gene': 'HEATR9', 'score': 5.59}, {'connected_gene': 'CCL5', 'score': 3.8}, {'connected_gene': 'SLFN12L', 'score': 2.39}, {'connected_gene': 'LYZL6', 'score': 2.17}, {'connected_gene': 'CCL23', 'score': 1.52}, {'connected_gene': 'GC17M035909', 'score': 0.37}, {'connected_gene': 'PIR57610', 'score': 0.37}, {'connected_gene': 'LRRC37A8P', 'score': 0.37}]